RNA–Protein interactions for RNA: ENST00000461872.6

SYNE1-216, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,075 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-216ENST00000461872 GAGE10A6NGK3 116 aa5.89□□□□□ -1.47
SYNE1-216ENST00000461872 RFESDQ8TAC1 157 aa5.89□□□□□ -1.47
SYNE1-216ENST00000461872 SPANXDQ9BXN6 97 aa5.89□□□□□ -1.47
SYNE1-216ENST00000461872 A0A1B0GWJ7 208 aa5.89□□□□□ -1.47
SYNE1-216ENST00000461872 F2RL2O00254 374 aa5.89□□□□□ -1.47
SYNE1-216ENST00000461872 GPX1P07203 203 aa5.89□□□□□ -1.47
SYNE1-216ENST00000461872 GATA4P43694 442 aa5.89□□□□□ -1.47
SYNE1-216ENST00000461872 DHRS13Q6UX07 377 aa5.89□□□□□ -1.47
SYNE1-216ENST00000461872 CADP27708 2225 aa5.89□□□□□ -1.47
SYNE1-216ENST00000461872 C8orf31Q8N9H6 132 aa5.89□□□□□ -1.47
SYNE1-216ENST00000461872 ZNF488Q96MN9 340 aa5.89□□□□□ -1.47
SYNE1-216ENST00000461872 REG1BP48304 166 aa5.88□□□□□ -1.47
SYNE1-216ENST00000461872 PRSS12P56730 875 aa5.88□□□□□ -1.47
SYNE1-216ENST00000461872 SPEM2Q0P670 501 aa5.88□□□□□ -1.47
SYNE1-216ENST00000461872 EFNB3Q15768 340 aa5.88□□□□□ -1.47
SYNE1-216ENST00000461872 Q1RN00 199 aa5.88□□□□□ -1.47
SYNE1-216ENST00000461872 RPEQ96AT9 228 aa5.88□□□□□ -1.47
SYNE1-216ENST00000461872 FOXJ2Q9P0K8 574 aa5.88□□□□□ -1.47
SYNE1-216ENST00000461872 C9JQL5 133 aa5.88□□□□□ -1.47
SYNE1-216ENST00000461872 NUDT3O95989 172 aa5.88□□□□□ -1.47
SYNE1-216ENST00000461872 SPINK14Q6IE38 97 aa5.88□□□□□ -1.47
SYNE1-216ENST00000461872 ZNF492Q9P255 531 aa5.88□□□□□ -1.47
SYNE1-216ENST00000461872 RPL27AP46776 148 aaKnown RBP5.88□□□□□ -1.47
SYNE1-216ENST00000461872 PCP4P48539 62 aa5.88□□□□□ -1.47
SYNE1-216ENST00000461872 PDE6HQ13956 83 aa5.88□□□□□ -1.47
SYNE1-216ENST00000461872 PAPPA-AS1Q5QFB9 102 aa5.88□□□□□ -1.47
SYNE1-216ENST00000461872 C11orf1Q9H5F2 150 aa5.88□□□□□ -1.47
SYNE1-216ENST00000461872 MLNRO43193 412 aa5.88□□□□□ -1.47
SYNE1-216ENST00000461872 Q56UQ5 140 aa5.88□□□□□ -1.47
SYNE1-216ENST00000461872 Q6P435 159 aa5.88□□□□□ -1.47
SYNE1-216ENST00000461872 TCF23Q7RTU1 214 aa5.88□□□□□ -1.47
SYNE1-216ENST00000461872 DMRTA2Q96SC8 542 aa5.88□□□□□ -1.47
SYNE1-216ENST00000461872 GGTLC1Q9BX51 225 aa5.88□□□□□ -1.47
SYNE1-216ENST00000461872 OTORQ9NRC9 128 aa5.88□□□□□ -1.47
SYNE1-216ENST00000461872 B3GALT5-AS1P59052 145 aa5.88□□□□□ -1.47
SYNE1-216ENST00000461872 HGFACQ04756 655 aa5.88□□□□□ -1.47
SYNE1-216ENST00000461872 CD69Q07108 199 aa5.88□□□□□ -1.47
SYNE1-216ENST00000461872 SMAGPQ0VAQ4 97 aa5.88□□□□□ -1.47
SYNE1-216ENST00000461872 C3AR1Q16581 482 aa5.88□□□□□ -1.47
SYNE1-216ENST00000461872 PVRIGQ6DKI7 326 aa5.88□□□□□ -1.47
SYNE1-216ENST00000461872 DEFB127Q9H1M4 99 aa5.88□□□□□ -1.47
SYNE1-216ENST00000461872 ATP5LO75964 103 aa5.88□□□□□ -1.47
SYNE1-216ENST00000461872 CAMPP49913 170 aa5.88□□□□□ -1.47
SYNE1-216ENST00000461872 COL4A2P08572 1712 aa5.88□□□□□ -1.47
SYNE1-216ENST00000461872 M0R1B8 84 aa5.88□□□□□ -1.47
SYNE1-216ENST00000461872 UPK2O00526 184 aa5.88□□□□□ -1.47
SYNE1-216ENST00000461872 ERVK11-1P61568 191 aa5.88□□□□□ -1.47
SYNE1-216ENST00000461872 LTC4SQ16873 150 aa5.88□□□□□ -1.47
SYNE1-216ENST00000461872 NIT1Q86X76 327 aa5.88□□□□□ -1.47
SYNE1-216ENST00000461872 PDCD1Q15116 288 aa5.87□□□□□ -1.47
SYNE1-216ENST00000461872 TGIF1Q15583 401 aa5.87□□□□□ -1.47
SYNE1-216ENST00000461872 TMEM177Q53S58 311 aa5.87□□□□□ -1.47
SYNE1-216ENST00000461872 TCRBV4S1A1TA0A5B7 111 aa5.87□□□□□ -1.47
SYNE1-216ENST00000461872 C7orf71A4D174 169 aa5.87□□□□□ -1.47
SYNE1-216ENST00000461872 FREM1Q5H8C1 2179 aa5.87□□□□□ -1.47
SYNE1-216ENST00000461872 C1orf210Q8IVY1 113 aa5.87□□□□□ -1.47
SYNE1-216ENST00000461872 SLC25A2Q9BXI2 301 aa5.87□□□□□ -1.47
SYNE1-216ENST00000461872 TCF21O43680 179 aa5.87□□□□□ -1.47
SYNE1-216ENST00000461872 SHISA5Q8N114 240 aa5.87□□□□□ -1.47
SYNE1-216ENST00000461872 ASCL3Q9NQ33 180 aa5.87□□□□□ -1.47
SYNE1-216ENST00000461872 TNCP24821 2201 aa5.87□□□□□ -1.47
SYNE1-216ENST00000461872 INS-IGF2F8WCM5 200 aa5.87□□□□□ -1.47
SYNE1-216ENST00000461872 MORN2Q502X0 79 aa5.87□□□□□ -1.47
SYNE1-216ENST00000461872 ENSAO43768 121 aaKnown RBP5.87□□□□□ -1.47
SYNE1-216ENST00000461872 TCL1AP56279 114 aa5.87□□□□□ -1.47
SYNE1-216ENST00000461872 TRGV9Q99603 122 aa5.87□□□□□ -1.47
SYNE1-216ENST00000461872 C17orf98A8MV24 154 aa5.87□□□□□ -1.47
SYNE1-216ENST00000461872 TWIST1Q15672 202 aa5.87□□□□□ -1.47
SYNE1-216ENST00000461872 GUCD1Q96NT3 240 aa5.87□□□□□ -1.47
SYNE1-216ENST00000461872 CRYBB3P26998 211 aa5.87□□□□□ -1.47
SYNE1-216ENST00000461872 ZNF664Q8N3J9 261 aa5.87□□□□□ -1.47
SYNE1-216ENST00000461872 CLEC12BQ2HXU8 276 aa5.87□□□□□ -1.47
SYNE1-216ENST00000461872 OR1B1Q8NGR6 318 aa5.87□□□□□ -1.47
SYNE1-216ENST00000461872 NXT2Q9NPJ8 142 aaKnown RBP5.87□□□□□ -1.47
SYNE1-216ENST00000461872 PCNX3Q9H6A9 2034 aa5.86□□□□□ -1.47
SYNE1-216ENST00000461872 WIPF3A6NGB9 483 aa5.86□□□□□ -1.47
SYNE1-216ENST00000461872 DKK1O94907 266 aa5.86□□□□□ -1.47
SYNE1-216ENST00000461872 YLPM1P49750 1951 aaKnown RBP5.86□□□□□ -1.47
SYNE1-216ENST00000461872 CA2P00918 260 aa5.86□□□□□ -1.47
SYNE1-216ENST00000461872 A0A1B0GV72 72 aa5.86□□□□□ -1.47
SYNE1-216ENST00000461872 C10orf142B7Z368 130 aa5.86□□□□□ -1.47
SYNE1-216ENST00000461872 LYZL6O75951 148 aa5.86□□□□□ -1.47
SYNE1-216ENST00000461872 GNB1P62873 340 aa5.86□□□□□ -1.47
SYNE1-216ENST00000461872 MOGAT3Q86VF5 341 aa5.86□□□□□ -1.47
SYNE1-216ENST00000461872 H1FXQ92522 213 aaKnown RBP5.86□□□□□ -1.47
SYNE1-216ENST00000461872 OR4C46A6NHA9 309 aa5.86□□□□□ -1.47
SYNE1-216ENST00000461872 DEFB108AA8MXU0 73 aa5.86□□□□□ -1.47
SYNE1-216ENST00000461872 CCL4P13236 92 aa5.86□□□□□ -1.47
SYNE1-216ENST00000461872 TFF3Q07654 80 aa5.86□□□□□ -1.47
SYNE1-216ENST00000461872 UBE2V1Q13404 147 aa5.86□□□□□ -1.47
SYNE1-216ENST00000461872 TMEM208Q9BTX3 173 aa5.86□□□□□ -1.47
SYNE1-216ENST00000461872 PAX9P55771 341 aa5.86□□□□□ -1.47
SYNE1-216ENST00000461872 DMRTC1Q5HYR2 192 aa5.86□□□□□ -1.47
SYNE1-216ENST00000461872 WDR82Q6UXN9 313 aa5.86□□□□□ -1.47
SYNE1-216ENST00000461872 FER1L5A0AVI2 2057 aa5.86□□□□□ -1.47
SYNE1-216ENST00000461872 PKDREJQ9NTG1 2253 aa5.86□□□□□ -1.47
SYNE1-216ENST00000461872 GFRA3O60609 400 aa5.86□□□□□ -1.47
SYNE1-216ENST00000461872 HSD52Q0P140 79 aa5.86□□□□□ -1.47
SYNE1-216ENST00000461872 TEX45Q8NA69 505 aa5.86□□□□□ -1.47
SYNE1-216ENST00000461872 MAP1LC3AQ9H492 121 aa5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms