RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 ZNF436Q9C0F3 470 aaPredicted RBP10.49□□□□□ -0.73
USP4-206ENST00000461553 NAA50Q9GZZ1 169 aaKnown RBP10.49□□□□□ -0.73
USP4-206ENST00000461553 RETNQ9HD89 108 aa10.49□□□□□ -0.73
USP4-206ENST00000461553 TMEM14BQ9NUH8 114 aa10.49□□□□□ -0.73
USP4-206ENST00000461553 C21orf62Q9NYP8 219 aa10.49□□□□□ -0.73
USP4-206ENST00000461553 MRPL27Q9P0M9 148 aaKnown RBP10.49□□□□□ -0.73
USP4-206ENST00000461553 EXTL2Q9UBQ6 330 aa10.49□□□□□ -0.73
USP4-206ENST00000461553 IGHV3-21A0A0B4J1V1 117 aa10.48□□□□□ -0.73
USP4-206ENST00000461553 ZNF182P17025 639 aaPredicted RBP10.48□□□□□ -0.73
USP4-206ENST00000461553 CTF1Q16619 201 aa10.48□□□□□ -0.73
USP4-206ENST00000461553 Q56UQ5 140 aa10.48□□□□□ -0.73
USP4-206ENST00000461553 MRGPRFQ96AM1 343 aa10.48□□□□□ -0.73
USP4-206ENST00000461553 FAM110AQ9BQ89 295 aa10.48□□□□□ -0.73
USP4-206ENST00000461553 DAZ1Q9NQZ3 744 aaKnown RBP10.48□□□□□ -0.73
USP4-206ENST00000461553 TRAV25A0A0B4J276 109 aa10.47□□□□□ -0.73
USP4-206ENST00000461553 RBMY1BA6NDE4 496 aaKnown RBP10.47□□□□□ -0.73
USP4-206ENST00000461553 RBMY1EA6NEQ0 496 aaKnown RBP10.47□□□□□ -0.73
USP4-206ENST00000461553 DBX1A6NMT0 343 aa10.47□□□□□ -0.73
USP4-206ENST00000461553 RBMY1DP0C7P1 496 aaKnown RBP10.47□□□□□ -0.73
USP4-206ENST00000461553 TBPP20226 339 aa10.47□□□□□ -0.73
USP4-206ENST00000461553 PPP5CP53041 499 aa10.47□□□□□ -0.73
USP4-206ENST00000461553 MFAP2P55001 183 aa10.47□□□□□ -0.73
USP4-206ENST00000461553 GPR107Q5VW38 600 aa10.47□□□□□ -0.73
USP4-206ENST00000461553 LINC00322Q6ZN03 302 aaPredicted RBP10.47□□□□□ -0.73
USP4-206ENST00000461553 ARRDC1Q8N5I2 433 aa10.47□□□□□ -0.73
USP4-206ENST00000461553 OR1P1Q8NH06 330 aa10.47□□□□□ -0.73
USP4-206ENST00000461553 SCARB1Q8WTV0 552 aa10.47□□□□□ -0.73
USP4-206ENST00000461553 C15orf40Q8WUR7 153 aa10.47□□□□□ -0.73
USP4-206ENST00000461553 ZNF486Q96H40 463 aaPredicted RBP10.47□□□□□ -0.73
USP4-206ENST00000461553 SEC22AQ96IW7 307 aa10.47□□□□□ -0.73
USP4-206ENST00000461553 C20orf24Q9BUV8 137 aa10.47□□□□□ -0.73
USP4-206ENST00000461553 MRPS26Q9BYN8 205 aaKnown RBP10.47□□□□□ -0.73
USP4-206ENST00000461553 HIPK2Q9H2X6 1198 aa10.47□□□□□ -0.73
USP4-206ENST00000461553 GAR1Q9NY12 217 aaKnown RBP10.47□□□□□ -0.73
USP4-206ENST00000461553 TENM2Q9NT68 2774 aa10.47□□□□□ -0.73
USP4-206ENST00000461553 K7EIM0 57 aa10.46□□□□□ -0.73
USP4-206ENST00000461553 NDUFA4O00483 81 aa10.46□□□□□ -0.73
USP4-206ENST00000461553 C8orf88P0DMB2 117 aa10.46□□□□□ -0.73
USP4-206ENST00000461553 AKR1C2P52895 323 aa10.46□□□□□ -0.73
USP4-206ENST00000461553 PIGPP57054 158 aa10.46□□□□□ -0.73
USP4-206ENST00000461553 RND3P61587 244 aa10.46□□□□□ -0.73
USP4-206ENST00000461553 PRCDQ00LT1 54 aa10.46□□□□□ -0.73
USP4-206ENST00000461553 GPR141Q7Z602 305 aa10.46□□□□□ -0.73
USP4-206ENST00000461553 ZNF114Q8NC26 417 aa10.46□□□□□ -0.73
USP4-206ENST00000461553 OR52I2Q8NH67 350 aa10.46□□□□□ -0.73
USP4-206ENST00000461553 MISP3Q96FF7 219 aa10.46□□□□□ -0.73
USP4-206ENST00000461553 SPAG8Q99932 426 aaPredicted RBP10.46□□□□□ -0.73
USP4-206ENST00000461553 KLK11Q9UBX7 282 aa10.46□□□□□ -0.73
USP4-206ENST00000461553 DNAH1Q9P2D7 4330 aa10.46□□□□□ -0.74
USP4-206ENST00000461553 ALMS1Q8TCU4 4167 aa10.45□□□□□ -0.74
USP4-206ENST00000461553 IGKV1-39P01597 117 aa10.45□□□□□ -0.74
USP4-206ENST00000461553 CD3DP04234 171 aa10.45□□□□□ -0.74
USP4-206ENST00000461553 IGKV1D-39P04432 117 aa10.45□□□□□ -0.74
USP4-206ENST00000461553 TAS2R19P59542 299 aa10.45□□□□□ -0.74
USP4-206ENST00000461553 RELQ04864 619 aaPredicted RBP10.45□□□□□ -0.74
USP4-206ENST00000461553 LHFPL1Q86WI0 220 aa10.45□□□□□ -0.74
USP4-206ENST00000461553 OR2C3Q8N628 320 aa10.45□□□□□ -0.74
USP4-206ENST00000461553 CCDC71LQ8N9Z2 235 aa10.45□□□□□ -0.74
USP4-206ENST00000461553 GGTLC1Q9BX51 225 aa10.45□□□□□ -0.74
USP4-206ENST00000461553 C5orf66Q9H5L9 145 aa10.45□□□□□ -0.74
USP4-206ENST00000461553 MTFP1Q9UDX5 166 aa10.45□□□□□ -0.74
USP4-206ENST00000461553 F8W735 103 aaPredicted RBP10.44□□□□□ -0.74
USP4-206ENST00000461553 NUPL2O15504 423 aaKnown RBP10.44□□□□□ -0.74
USP4-206ENST00000461553 RGS5O15539 181 aa10.44□□□□□ -0.74
USP4-206ENST00000461553 ATG12O94817 140 aa10.44□□□□□ -0.74
USP4-206ENST00000461553 PI3P19957 117 aa10.44□□□□□ -0.74
USP4-206ENST00000461553 ERHP84090 104 aaKnown RBP10.44□□□□□ -0.74
USP4-206ENST00000461553 LAMTOR1Q6IAA8 161 aa10.44□□□□□ -0.74
USP4-206ENST00000461553 SLC35G3Q8N808 338 aa10.44□□□□□ -0.74
USP4-206ENST00000461553 CHRDL1Q9BU40 450 aa10.44□□□□□ -0.74
USP4-206ENST00000461553 PDCD10Q9BUL8 212 aa10.44□□□□□ -0.74
USP4-206ENST00000461553 COPZ2Q9P299 210 aa10.44□□□□□ -0.74
USP4-206ENST00000461553 PLECQ15149 4684 aaKnown RBP10.43□□□□□ -0.74
USP4-206ENST00000461553 IGHV3OR16-8A0A075B7F1 116 aa10.43□□□□□ -0.74
USP4-206ENST00000461553 LOC102724200A0A096LPH7 203 aaPredicted RBP10.43□□□□□ -0.74
USP4-206ENST00000461553 TSPAN4O14817 238 aa10.43□□□□□ -0.74
USP4-206ENST00000461553 ADMP35318 185 aa10.43□□□□□ -0.74
USP4-206ENST00000461553 MFAP4P55083 255 aa10.43□□□□□ -0.74
USP4-206ENST00000461553 HSPE1P61604 102 aaKnown RBP10.43□□□□□ -0.74
USP4-206ENST00000461553 MRPS10P82664 201 aaKnown RBP10.43□□□□□ -0.74
USP4-206ENST00000461553 TRIM16LQ309B1 348 aa10.43□□□□□ -0.74
USP4-206ENST00000461553 SCGB2B2Q4G0G5 96 aa10.43□□□□□ -0.74
USP4-206ENST00000461553 RNASE11Q8TAA1 199 aaKnown RBP10.43□□□□□ -0.74
USP4-206ENST00000461553 IL17DQ8TAD2 202 aa10.43□□□□□ -0.74
USP4-206ENST00000461553 ZFAND1Q8TCF1 268 aa10.43□□□□□ -0.74
USP4-206ENST00000461553 PINX1Q96BK5 328 aaKnown RBP10.43□□□□□ -0.74
USP4-206ENST00000461553 TP53RKQ96S44 253 aa10.43□□□□□ -0.74
USP4-206ENST00000461553 LCE6AA0A183 80 aa10.42□□□□□ -0.74
USP4-206ENST00000461553 C3orf85A0A1B0GTC6 90 aa10.42□□□□□ -0.74
USP4-206ENST00000461553 OR4C46A6NHA9 309 aa10.42□□□□□ -0.74
USP4-206ENST00000461553 C15orf62A8K5M9 175 aa10.42□□□□□ -0.74
USP4-206ENST00000461553 GABARAPH6UMI1 98 aa10.42□□□□□ -0.74
USP4-206ENST00000461553 I3L2K1 104 aa10.42□□□□□ -0.74
USP4-206ENST00000461553 ZNF207O43670 478 aaKnown RBP10.42□□□□□ -0.74
USP4-206ENST00000461553 RAB3DO95716 219 aa10.42□□□□□ -0.74
USP4-206ENST00000461553 MT-CO2P00403 227 aa10.42□□□□□ -0.74
USP4-206ENST00000461553 CD74P04233 296 aa10.42□□□□□ -0.74
USP4-206ENST00000461553 SSBP1Q04837 148 aaKnown RBP10.42□□□□□ -0.74
USP4-206ENST00000461553 SPINK9Q5DT21 86 aa10.42□□□□□ -0.74
USP4-206ENST00000461553 TMEM229BQ8NBD8 167 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms