RNA–Protein interactions for RNA: ENST00000454830.6

CLK3-203, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 3,787 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-203ENST00000454830 C11orf42Q8N5U0 333 aa11.06□□□□□ -0.64
CLK3-203ENST00000454830 MISP3Q96FF7 219 aa11.06□□□□□ -0.64
CLK3-203ENST00000454830 CNIH1O95406 144 aa11.05□□□□□ -0.64
CLK3-203ENST00000454830 LINC00311Q8N616 119 aa11.05□□□□□ -0.64
CLK3-203ENST00000454830 PCGF1Q9BSM1 259 aa11.05□□□□□ -0.64
CLK3-203ENST00000454830 CHODLQ9H9P2 273 aa11.05□□□□□ -0.64
CLK3-203ENST00000454830 METTL1Q9UBP6 276 aaKnown RBP11.05□□□□□ -0.64
CLK3-203ENST00000454830 DCHS2Q6V1P9 2916 aa11.05□□□□□ -0.64
CLK3-203ENST00000454830 AKR1D1P51857 326 aa11.05□□□□□ -0.64
CLK3-203ENST00000454830 LCN2P80188 198 aa11.05□□□□□ -0.64
CLK3-203ENST00000454830 AARDQ4LEZ3 155 aa11.05□□□□□ -0.64
CLK3-203ENST00000454830 FAM78BQ5VT40 261 aa11.05□□□□□ -0.64
CLK3-203ENST00000454830 GGACTQ9BVM4 153 aa11.05□□□□□ -0.64
CLK3-203ENST00000454830 FBXL15Q9H469 300 aa11.05□□□□□ -0.64
CLK3-203ENST00000454830 KCNIP2Q9NS61 270 aa11.05□□□□□ -0.64
CLK3-203ENST00000454830 DOK5Q9P104 306 aa11.05□□□□□ -0.64
CLK3-203ENST00000454830 IGHV1-3A0A0C4DH29 117 aa11.05□□□□□ -0.64
CLK3-203ENST00000454830 BUB1B-PAK6H3BSN5 160 aa11.05□□□□□ -0.64
CLK3-203ENST00000454830 CRYBA1P05813 215 aa11.05□□□□□ -0.64
CLK3-203ENST00000454830 VWC2Q2TAL6 325 aa11.05□□□□□ -0.64
CLK3-203ENST00000454830 ST6GALNAC6Q969X2 333 aa11.05□□□□□ -0.64
CLK3-203ENST00000454830 AMMECR1Q9Y4X0 333 aaPredicted RBP11.05□□□□□ -0.64
CLK3-203ENST00000454830 EPG5Q9HCE0 2579 aa11.05□□□□□ -0.64
CLK3-203ENST00000454830 A0A1W2PN81 502 aa11.04□□□□□ -0.64
CLK3-203ENST00000454830 ARL14EPLP0DKL9 152 aa11.04□□□□□ -0.64
CLK3-203ENST00000454830 CHRNA7P36544 502 aa11.04□□□□□ -0.64
CLK3-203ENST00000454830 SUB1P53999 127 aaKnown RBP eCLIP11.04□□□□□ -0.64
CLK3-203ENST00000454830 LGALS4P56470 323 aa11.04□□□□□ -0.64
CLK3-203ENST00000454830 RHEBQ15382 184 aa11.04□□□□□ -0.64
CLK3-203ENST00000454830 OR2T6Q8NHC8 308 aa11.04□□□□□ -0.64
CLK3-203ENST00000454830 C11orf94C9JXX5 98 aa11.04□□□□□ -0.64
CLK3-203ENST00000454830 HTR1DP28221 377 aa11.04□□□□□ -0.64
CLK3-203ENST00000454830 OR4P4Q8NGL7 312 aa11.04□□□□□ -0.64
CLK3-203ENST00000454830 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.04□□□□□ -0.646e-7■■■□□ 16.8
CLK3-203ENST00000454830 HRNRQ86YZ3 2850 aaPredicted RBP11.04□□□□□ -0.64
CLK3-203ENST00000454830 MMDQ15546 238 aa11.04□□□□□ -0.64
CLK3-203ENST00000454830 SSX2Q16385 188 aa11.04□□□□□ -0.64
CLK3-203ENST00000454830 TMEM167AQ8TBQ9 72 aa11.04□□□□□ -0.64
CLK3-203ENST00000454830 YIF1AO95070 293 aa11.03□□□□□ -0.64
CLK3-203ENST00000454830 RNASE2P10153 161 aaKnown RBP11.03□□□□□ -0.64
CLK3-203ENST00000454830 RPL27AP46776 148 aaKnown RBP11.03□□□□□ -0.64
CLK3-203ENST00000454830 LGALS7P47929 136 aa11.03□□□□□ -0.64
CLK3-203ENST00000454830 SPATA31B1PQ5VZV4 182 aa11.03□□□□□ -0.64
CLK3-203ENST00000454830 CENPVQ7Z7K6 275 aaPredicted RBP11.03□□□□□ -0.64
CLK3-203ENST00000454830 C19orf35Q6ZS72 473 aa11.03□□□□□ -0.64
CLK3-203ENST00000454830 AURKAIP1Q9NWT8 199 aaPredicted RBP11.03□□□□□ -0.64
CLK3-203ENST00000454830 IGSF10Q6WRI0 2623 aa11.03□□□□□ -0.64
CLK3-203ENST00000454830 CFAP46Q8IYW2 2715 aa11.03□□□□□ -0.64
CLK3-203ENST00000454830 TIMM23O14925 209 aa11.03□□□□□ -0.64
CLK3-203ENST00000454830 OR7C2O60412 319 aa11.03□□□□□ -0.64
CLK3-203ENST00000454830 RPS10P46783 165 aaKnown RBP11.02□□□□□ -0.64
CLK3-203ENST00000454830 RHOBP62745 196 aa11.02□□□□□ -0.64
CLK3-203ENST00000454830 WT1-ASQ06250 92 aa11.02□□□□□ -0.64
CLK3-203ENST00000454830 C11orf71Q6IPW1 123 aa11.02□□□□□ -0.64
CLK3-203ENST00000454830 SLC16A13Q7RTY0 426 aa11.02□□□□□ -0.64
CLK3-203ENST00000454830 SEPSECSQ9HD40 501 aaKnown RBP11.02□□□□□ -0.64
CLK3-203ENST00000454830 NDUFA4L2Q9NRX3 87 aa11.02□□□□□ -0.64
CLK3-203ENST00000454830 MT-CO2P00403 227 aa11.02□□□□□ -0.65
CLK3-203ENST00000454830 SNRPCP09234 159 aaKnown RBP11.02□□□□□ -0.65
CLK3-203ENST00000454830 GAMTQ14353 236 aa11.02□□□□□ -0.65
CLK3-203ENST00000454830 LHFPL4Q7Z7J7 247 aa11.02□□□□□ -0.65
CLK3-203ENST00000454830 MMD2Q8IY49 270 aa11.02□□□□□ -0.65
CLK3-203ENST00000454830 NPIPB3Q92617 1050 aa11.02□□□□□ -0.65
CLK3-203ENST00000454830 MANBALQ9NQG1 85 aa11.02□□□□□ -0.65
CLK3-203ENST00000454830 C1orf196B1AJZ1 125 aa11.02□□□□□ -0.65
CLK3-203ENST00000454830 FAM90A2PQ658T7 463 aa11.02□□□□□ -0.65
CLK3-203ENST00000454830 FAM71F2Q6NXP2 309 aa11.02□□□□□ -0.65
CLK3-203ENST00000454830 ZNF343Q6P1L6 599 aa11.02□□□□□ -0.65
CLK3-203ENST00000454830 OR51G1Q8NGK1 321 aa11.02□□□□□ -0.65
CLK3-203ENST00000454830 TNFRSF14Q92956 283 aa11.02□□□□□ -0.65
CLK3-203ENST00000454830 LRRK2Q5S007 2527 aa11.02□□□□□ -0.65
CLK3-203ENST00000454830 ZNF462Q96JM2 2506 aa11.02□□□□□ -0.65
CLK3-203ENST00000454830 USP9XQ93008 2570 aaPredicted RBP11.01□□□□□ -0.65
CLK3-203ENST00000454830 PRSS46E5RG02 174 aa11.01□□□□□ -0.65
CLK3-203ENST00000454830 IGLV1-47P01700 117 aa11.01□□□□□ -0.65
CLK3-203ENST00000454830 S100A6P06703 90 aa11.01□□□□□ -0.65
CLK3-203ENST00000454830 HNF1AP20823 631 aa11.01□□□□□ -0.65
CLK3-203ENST00000454830 ATP5G3P48201 142 aa11.01□□□□□ -0.65
CLK3-203ENST00000454830 CD81P60033 236 aa11.01□□□□□ -0.65
CLK3-203ENST00000454830 CLEC12BQ2HXU8 276 aa11.01□□□□□ -0.65
CLK3-203ENST00000454830 C15orf54Q8N8G6 183 aa11.01□□□□□ -0.65
CLK3-203ENST00000454830 NECAP1Q8NC96 275 aa11.01□□□□□ -0.65
CLK3-203ENST00000454830 DPM3Q9P2X0 92 aa11.01□□□□□ -0.65
CLK3-203ENST00000454830 A0A087X0M5 115 aa11.01□□□□□ -0.65
CLK3-203ENST00000454830 A0A1B0GX30 115 aa11.01□□□□□ -0.65
CLK3-203ENST00000454830 A0A1W2PPI3 338 aa11.01□□□□□ -0.65
CLK3-203ENST00000454830 CD69Q07108 199 aa11.01□□□□□ -0.65
CLK3-203ENST00000454830 C2orf83Q53S99 150 aa11.01□□□□□ -0.65
CLK3-203ENST00000454830 C8orf31Q8N9H6 132 aa11.01□□□□□ -0.65
CLK3-203ENST00000454830 HIST1H2BAQ96A08 127 aa11.01□□□□□ -0.65
CLK3-203ENST00000454830 NCBP2LA6PVI3 153 aaKnown RBP11.01□□□□□ -0.65
CLK3-203ENST00000454830 COLCA2A8K830 154 aa11.01□□□□□ -0.65
CLK3-203ENST00000454830 RAB5BP61020 215 aa11.01□□□□□ -0.65
CLK3-203ENST00000454830 SPNS3Q6ZMD2 512 aa11.01□□□□□ -0.65
CLK3-203ENST00000454830 TMEM144Q7Z5S9 345 aa11.01□□□□□ -0.65
CLK3-203ENST00000454830 MRPL41Q8IXM3 137 aaKnown RBP11.01□□□□□ -0.65
CLK3-203ENST00000454830 FLNCQ14315 2725 aa11.01□□□□□ -0.65
CLK3-203ENST00000454830 IGLV2-23P01705 113 aa11□□□□□ -0.65
CLK3-203ENST00000454830 OR5G3P0C626 314 aa11□□□□□ -0.65
CLK3-203ENST00000454830 CEACAM3P40198 252 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms