RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 ZFP57Q9NU63 452 aa12.35□□□□□ -0.43
USP40-206ENST00000443711 CYB5BO43169 146 aa12.34□□□□□ -0.43
USP40-206ENST00000443711 BRI3O95415 125 aa12.34□□□□□ -0.43
USP40-206ENST00000443711 PF4V1P10720 104 aa12.34□□□□□ -0.43
USP40-206ENST00000443711 DEFA4P12838 97 aa12.34□□□□□ -0.43
USP40-206ENST00000443711 CXCL3P19876 107 aa12.34□□□□□ -0.43
USP40-206ENST00000443711 SUB1P53999 127 aaKnown RBP eCLIP12.34□□□□□ -0.43
USP40-206ENST00000443711 POLR2GP62487 172 aaKnown RBP eCLIP12.34□□□□□ -0.43
USP40-206ENST00000443711 SRSF4Q08170 494 aaKnown RBP12.34□□□□□ -0.43
USP40-206ENST00000443711 TMEM65Q6PI78 240 aa12.34□□□□□ -0.43
USP40-206ENST00000443711 C10orf99Q6UWK7 81 aa12.34□□□□□ -0.43
USP40-206ENST00000443711 OR11H7Q8NGC8 314 aa12.34□□□□□ -0.43
USP40-206ENST00000443711 OR1L6Q8NGR2 347 aa12.34□□□□□ -0.43
USP40-206ENST00000443711 F11RQ9Y624 299 aaKnown RBP12.34□□□□□ -0.43
USP40-206ENST00000443711 IAPPP10997 89 aa12.33□□□□□ -0.44
USP40-206ENST00000443711 HIST1H1BP16401 226 aaKnown RBP12.33□□□□□ -0.44
USP40-206ENST00000443711 PSMB8P28062 276 aa12.33□□□□□ -0.44
USP40-206ENST00000443711 HTR2BP41595 481 aa12.33□□□□□ -0.44
USP40-206ENST00000443711 ZNF114Q8NC26 417 aa12.33□□□□□ -0.44
USP40-206ENST00000443711 MS4A10Q96PG2 267 aa12.33□□□□□ -0.44
USP40-206ENST00000443711 P2RX4Q99571 388 aa12.33□□□□□ -0.44
USP40-206ENST00000443711 ZNF436Q9C0F3 470 aaPredicted RBP12.33□□□□□ -0.44
USP40-206ENST00000443711 SLA2Q9H6Q3 261 aa12.33□□□□□ -0.44
USP40-206ENST00000443711 LSM5Q9Y4Y9 91 aaKnown RBP12.33□□□□□ -0.44
USP40-206ENST00000443711 K7EPK0 472 aa12.32□□□□□ -0.44
USP40-206ENST00000443711 TRGV3P03979 118 aa12.32□□□□□ -0.44
USP40-206ENST00000443711 RAB9AP51151 201 aa12.32□□□□□ -0.44
USP40-206ENST00000443711 ATP5IP56385 69 aaPredicted RBP12.32□□□□□ -0.44
USP40-206ENST00000443711 S100A10P60903 97 aa12.32□□□□□ -0.44
USP40-206ENST00000443711 RAB32Q13637 225 aa12.32□□□□□ -0.44
USP40-206ENST00000443711 KLK9Q2XQG4 91 aa12.32□□□□□ -0.44
USP40-206ENST00000443711 SLC25A24Q6NUK1 477 aa12.32□□□□□ -0.44
USP40-206ENST00000443711 C12orf54Q6X4T0 127 aa12.32□□□□□ -0.44
USP40-206ENST00000443711 NOXA1Q86UR1 476 aa12.32□□□□□ -0.44
USP40-206ENST00000443711 RNF152Q8N8N0 203 aa12.32□□□□□ -0.44
USP40-206ENST00000443711 OR1P1Q8NH06 330 aa12.32□□□□□ -0.44
USP40-206ENST00000443711 WFDC12Q8WWY7 111 aa12.32□□□□□ -0.44
USP40-206ENST00000443711 ASB13Q8WXK3 278 aa12.32□□□□□ -0.44
USP40-206ENST00000443711 SMIM8Q96KF7 97 aa12.32□□□□□ -0.44
USP40-206ENST00000443711 RAB40CQ96S21 281 aa12.32□□□□□ -0.44
USP40-206ENST00000443711 KLK9Q9UKQ9 250 aa12.32□□□□□ -0.44
USP40-206ENST00000443711 U3KQ87 197 aa12.32□□□□□ -0.44
USP40-206ENST00000443711 L7N2F9 121 aa12.31□□□□□ -0.44
USP40-206ENST00000443711 SSSCA1O60232 199 aa12.31□□□□□ -0.44
USP40-206ENST00000443711 IFNA10P01566 189 aa12.31□□□□□ -0.44
USP40-206ENST00000443711 PRH1P02810 166 aa12.31□□□□□ -0.44
USP40-206ENST00000443711 RLN2P04090 185 aa12.31□□□□□ -0.44
USP40-206ENST00000443711 RNASE2P10153 161 aaKnown RBP12.31□□□□□ -0.44
USP40-206ENST00000443711 TPPP2P59282 170 aa12.31□□□□□ -0.44
USP40-206ENST00000443711 TAS2R30P59541 319 aa12.31□□□□□ -0.44
USP40-206ENST00000443711 VAMP2P63027 116 aa12.31□□□□□ -0.44
USP40-206ENST00000443711 RPP30P78346 268 aaKnown RBP12.31□□□□□ -0.44
USP40-206ENST00000443711 BSXQ3C1V8 233 aa12.31□□□□□ -0.44
USP40-206ENST00000443711 C2orf83Q53S99 150 aa12.31□□□□□ -0.44
USP40-206ENST00000443711 C19orf35Q6ZS72 473 aa12.31□□□□□ -0.44
USP40-206ENST00000443711 SLC24A4Q8NFF2 622 aa12.31□□□□□ -0.44
USP40-206ENST00000443711 FANCD2OSQ96PS1 177 aa12.31□□□□□ -0.44
USP40-206ENST00000443711 KLK15Q9H2R5 256 aa12.31□□□□□ -0.44
USP40-206ENST00000443711 THYN1Q9P016 225 aa12.31□□□□□ -0.44
USP40-206ENST00000443711 RCL1Q9Y2P8 373 aaKnown RBP12.31□□□□□ -0.44
USP40-206ENST00000443711 FBN1P35555 2871 aaKnown RBP12.31□□□□□ -0.44
USP40-206ENST00000443711 COL6A5A8TX70 2615 aa12.3□□□□□ -0.44
USP40-206ENST00000443711 IGLV11-55A0A075B6I3 123 aa12.3□□□□□ -0.44
USP40-206ENST00000443711 TRBV9A0A0B4J1U6 114 aa12.3□□□□□ -0.44
USP40-206ENST00000443711 TCRBV4S1A1TA0A5B7 111 aa12.3□□□□□ -0.44
USP40-206ENST00000443711 RPLP1P05386 114 aaKnown RBP12.3□□□□□ -0.44
USP40-206ENST00000443711 GIPP09681 153 aaPredicted RBP12.3□□□□□ -0.44
USP40-206ENST00000443711 CD28P10747 220 aa12.3□□□□□ -0.44
USP40-206ENST00000443711 PVALBP20472 110 aaPredicted RBP12.3□□□□□ -0.44
USP40-206ENST00000443711 NPY1RP25929 384 aa12.3□□□□□ -0.44
USP40-206ENST00000443711 KRTAP10-3P60369 221 aa12.3□□□□□ -0.44
USP40-206ENST00000443711 CD83Q01151 205 aa12.3□□□□□ -0.44
USP40-206ENST00000443711 TCTEX1D4Q5JR98 221 aa12.3□□□□□ -0.44
USP40-206ENST00000443711 C11orf87Q6NUJ2 197 aa12.3□□□□□ -0.44
USP40-206ENST00000443711 NECAP1Q8NC96 275 aa12.3□□□□□ -0.44
USP40-206ENST00000443711 PPP1R1CQ8WVI7 109 aa12.3□□□□□ -0.44
USP40-206ENST00000443711 WDR89Q96FK6 387 aaPredicted RBP12.3□□□□□ -0.44
USP40-206ENST00000443711 PSENENQ9NZ42 101 aa12.3□□□□□ -0.44
USP40-206ENST00000443711 FBXL7Q9UJT9 491 aa12.3□□□□□ -0.44
USP40-206ENST00000443711 hCG_2014768A0A024R1R8 64 aa12.29□□□□□ -0.44
USP40-206ENST00000443711 A0A0G2JLM5 398 aa12.29□□□□□ -0.44
USP40-206ENST00000443711 FAM223BA6NKX1 122 aa12.29□□□□□ -0.44
USP40-206ENST00000443711 OR2J3O76001 311 aa12.29□□□□□ -0.44
USP40-206ENST00000443711 MFAP2P55001 183 aa12.29□□□□□ -0.44
USP40-206ENST00000443711 RAP2BP61225 183 aa12.29□□□□□ -0.44
USP40-206ENST00000443711 RPL23AP62750 156 aaKnown RBP12.29□□□□□ -0.44
USP40-206ENST00000443711 RHOGP84095 191 aa12.29□□□□□ -0.44
USP40-206ENST00000443711 LRRC37A5PQ49AS3 106 aa12.29□□□□□ -0.44
USP40-206ENST00000443711 LCNL1Q6ZST4 164 aa12.29□□□□□ -0.44
USP40-206ENST00000443711 FAM223AQ8IWN6 122 aa12.29□□□□□ -0.44
USP40-206ENST00000443711 C3orf56Q8N813 242 aa12.29□□□□□ -0.44
USP40-206ENST00000443711 C11orf44Q8N8P7 122 aa12.29□□□□□ -0.44
USP40-206ENST00000443711 MISP3Q96FF7 219 aa12.29□□□□□ -0.44
USP40-206ENST00000443711 USMG5Q96IX5 58 aa12.29□□□□□ -0.44
USP40-206ENST00000443711 ZNF747Q9BV97 191 aa12.29□□□□□ -0.44
USP40-206ENST00000443711 STRAPQ9Y3F4 350 aaKnown RBP12.29□□□□□ -0.44
USP40-206ENST00000443711 DMRT1Q9Y5R6 373 aa12.29□□□□□ -0.44
USP40-206ENST00000443711 CORTO00230 105 aa12.28□□□□□ -0.44
USP40-206ENST00000443711 TSC22D2O75157 780 aa12.28□□□□□ -0.44
USP40-206ENST00000443711 DEDDO75618 318 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 72.2 ms