RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 CTRB1P17538 263 aa11.22□□□□□ -0.61
SF3B1-204ENST00000414963 TMEM267Q0VDI3 215 aaPredicted RBP11.22□□□□□ -0.61
SF3B1-204ENST00000414963 KLK9Q2XQG4 91 aa11.22□□□□□ -0.61
SF3B1-204ENST00000414963 CTRB2Q6GPI1 263 aa11.22□□□□□ -0.61
SF3B1-204ENST00000414963 TMEM14EPQ6UXP3 125 aa11.22□□□□□ -0.61
SF3B1-204ENST00000414963 DCUN1D4Q92564 292 aa11.22□□□□□ -0.61
SF3B1-204ENST00000414963 AQP10Q96PS8 301 aa11.22□□□□□ -0.61
SF3B1-204ENST00000414963 FAM103A1Q9BTL3 118 aaKnown RBP11.22□□□□□ -0.61
SF3B1-204ENST00000414963 ZNF702PQ9H963 129 aa11.22□□□□□ -0.61
SF3B1-204ENST00000414963 PARP11Q9NR21 331 aa11.22□□□□□ -0.61
SF3B1-204ENST00000414963 KLK9Q9UKQ9 250 aa11.22□□□□□ -0.61
SF3B1-204ENST00000414963 STRAPQ9Y3F4 350 aaKnown RBP11.22□□□□□ -0.61
SF3B1-204ENST00000414963 TET2Q6N021 2002 aaPredicted RBP11.21□□□□□ -0.61
SF3B1-204ENST00000414963 FXYD6-FXYD2A0A087WZ82 144 aa11.21□□□□□ -0.61
SF3B1-204ENST00000414963 C15orf62A8K5M9 175 aa11.21□□□□□ -0.61
SF3B1-204ENST00000414963 TSPAN9O75954 239 aa11.21□□□□□ -0.61
SF3B1-204ENST00000414963 HKR1P10072 659 aa11.21□□□□□ -0.61
SF3B1-204ENST00000414963 RNASE2P10153 161 aaKnown RBP11.21□□□□□ -0.61
SF3B1-204ENST00000414963 SNCAP37840 140 aa11.21□□□□□ -0.61
SF3B1-204ENST00000414963 SUB1P53999 127 aaKnown RBP eCLIP11.21□□□□□ -0.61
SF3B1-204ENST00000414963 C2orf83Q53S99 150 aa11.21□□□□□ -0.61
SF3B1-204ENST00000414963 C9orf152Q5JTZ5 239 aa11.21□□□□□ -0.61
SF3B1-204ENST00000414963 SPANXN5Q5MJ07 72 aa11.21□□□□□ -0.61
SF3B1-204ENST00000414963 TMEM252Q8N6L7 170 aa11.21□□□□□ -0.61
SF3B1-204ENST00000414963 LFNGQ8NES3 379 aa11.21□□□□□ -0.61
SF3B1-204ENST00000414963 SLC24A4Q8NFF2 622 aa11.21□□□□□ -0.61
SF3B1-204ENST00000414963 OR1P1Q8NH06 330 aa11.21□□□□□ -0.61
SF3B1-204ENST00000414963 ABHD5Q8WTS1 349 aa11.21□□□□□ -0.61
SF3B1-204ENST00000414963 TMEM170AQ8WVE7 144 aa11.21□□□□□ -0.61
SF3B1-204ENST00000414963 OR4C12Q96R67 309 aa11.21□□□□□ -0.61
SF3B1-204ENST00000414963 P2RX4Q99571 388 aa11.21□□□□□ -0.61
SF3B1-204ENST00000414963 SLC25A31Q9H0C2 315 aa11.21□□□□□ -0.61
SF3B1-204ENST00000414963 TRAV41A0A0B4J266 112 aa11.2□□□□□ -0.62
SF3B1-204ENST00000414963 FAM24AA6NFZ4 105 aa11.2□□□□□ -0.62
SF3B1-204ENST00000414963 FBXO24O75426 580 aa11.2□□□□□ -0.62
SF3B1-204ENST00000414963 SCAF4O95104 1147 aaKnown RBP11.2□□□□□ -0.62
SF3B1-204ENST00000414963 BRI3O95415 125 aa11.2□□□□□ -0.62
SF3B1-204ENST00000414963 IFNA10P01566 189 aa11.2□□□□□ -0.62
SF3B1-204ENST00000414963 NPY1RP25929 384 aa11.2□□□□□ -0.62
SF3B1-204ENST00000414963 RPL12P30050 165 aaKnown RBP11.2□□□□□ -0.62
SF3B1-204ENST00000414963 CAV2P51636 162 aa11.2□□□□□ -0.62
SF3B1-204ENST00000414963 ACOT7LQ6ZUV0 252 aa11.2□□□□□ -0.62
SF3B1-204ENST00000414963 INO80EQ8NBZ0 244 aaPredicted RBP11.2□□□□□ -0.62
SF3B1-204ENST00000414963 OR1L6Q8NGR2 347 aa11.2□□□□□ -0.62
SF3B1-204ENST00000414963 FAM110DQ8TAY7 271 aaPredicted RBP11.2□□□□□ -0.62
SF3B1-204ENST00000414963 F11RQ9Y624 299 aaKnown RBP11.2□□□□□ -0.62
SF3B1-204ENST00000414963 IGSF23A1L1A6 192 aa11.19□□□□□ -0.62
SF3B1-204ENST00000414963 RNF222A6NCQ9 220 aa11.19□□□□□ -0.62
SF3B1-204ENST00000414963 PMS2P5A8MQ11 134 aa11.19□□□□□ -0.62
SF3B1-204ENST00000414963 H3BP45 60 aa11.19□□□□□ -0.62
SF3B1-204ENST00000414963 PPIFP30405 207 aaKnown RBP11.19□□□□□ -0.62
SF3B1-204ENST00000414963 NUP62P37198 522 aaPredicted RBP11.19□□□□□ -0.62
SF3B1-204ENST00000414963 SULT1A1P50225 295 aa11.19□□□□□ -0.62
SF3B1-204ENST00000414963 RAB11AP62491 216 aa11.19□□□□□ -0.62
SF3B1-204ENST00000414963 BAXQ07812 192 aa11.19□□□□□ -0.62
SF3B1-204ENST00000414963 OR2F1Q13607 317 aa11.19□□□□□ -0.62
SF3B1-204ENST00000414963 ZNF345Q14585 488 aa11.19□□□□□ -0.62
SF3B1-204ENST00000414963 UNQ5815/PRO19632Q6UWF5 114 aa11.19□□□□□ -0.62
SF3B1-204ENST00000414963 STPG2Q8N412 459 aa11.19□□□□□ -0.62
SF3B1-204ENST00000414963 C16orf95Q9H693 158 aa11.19□□□□□ -0.62
SF3B1-204ENST00000414963 G3V318 75 aa11.18□□□□□ -0.62
SF3B1-204ENST00000414963 ARPC5O15511 151 aa11.18□□□□□ -0.62
SF3B1-204ENST00000414963 NDUFA7O95182 113 aa11.18□□□□□ -0.62
SF3B1-204ENST00000414963 REG1AP05451 166 aa11.18□□□□□ -0.62
SF3B1-204ENST00000414963 CRYBA1P05813 215 aa11.18□□□□□ -0.62
SF3B1-204ENST00000414963 APELAP0DMC3 54 aa11.18□□□□□ -0.62
SF3B1-204ENST00000414963 EWSR1Q01844 656 aaKnown RBP eCLIP11.18□□□□□ -0.62
SF3B1-204ENST00000414963 CFHR3Q02985 330 aa11.18□□□□□ -0.62
SF3B1-204ENST00000414963 Q6ZSV7 163 aa11.18□□□□□ -0.62
SF3B1-204ENST00000414963 RNASEH2CQ8TDP1 164 aaKnown RBP11.18□□□□□ -0.62
SF3B1-204ENST00000414963 GON7Q9BXV9 100 aa11.18□□□□□ -0.62
SF3B1-204ENST00000414963 WNT10AQ9GZT5 417 aa11.18□□□□□ -0.62
SF3B1-204ENST00000414963 MFFQ9GZY8 342 aa11.18□□□□□ -0.62
SF3B1-204ENST00000414963 NIPBLQ6KC79 2804 aaeCLIP11.18□□□□□ -0.62
SF3B1-204ENST00000414963 TEP1Q99973 2627 aaKnown RBP11.18□□□□□ -0.62
SF3B1-204ENST00000414963 NF1P21359 2839 aa11.17□□□□□ -0.62
SF3B1-204ENST00000414963 A0A0D9SG52 128 aa11.17□□□□□ -0.62
SF3B1-204ENST00000414963 PRSS46E5RG02 174 aa11.17□□□□□ -0.62
SF3B1-204ENST00000414963 BOLA2-SMG1P6H3BVE0 249 aa11.17□□□□□ -0.62
SF3B1-204ENST00000414963 CYB5BO43169 146 aa11.17□□□□□ -0.62
SF3B1-204ENST00000414963 HNRNPCP07910 306 aaKnown RBP eCLIP11.17□□□□□ -0.62
SF3B1-204ENST00000414963 OR8U8P0C7N1 319 aa11.17□□□□□ -0.62
SF3B1-204ENST00000414963 METTL15P1P0C7V9 234 aa11.17□□□□□ -0.62
SF3B1-204ENST00000414963 CXCL2P19875 107 aa11.17□□□□□ -0.62
SF3B1-204ENST00000414963 MFAP2P55001 183 aa11.17□□□□□ -0.62
SF3B1-204ENST00000414963 ECSCRQ19T08 205 aa11.17□□□□□ -0.62
SF3B1-204ENST00000414963 LGALSLQ3ZCW2 172 aaPredicted RBP11.17□□□□□ -0.62
SF3B1-204ENST00000414963 LAMTOR1Q6IAA8 161 aa11.17□□□□□ -0.62
SF3B1-204ENST00000414963 ETV3LQ6ZN32 361 aa11.17□□□□□ -0.62
SF3B1-204ENST00000414963 HAPLN4Q86UW8 402 aa11.17□□□□□ -0.62
SF3B1-204ENST00000414963 STX12Q86Y82 276 aa11.17□□□□□ -0.62
SF3B1-204ENST00000414963 KCNRGQ8N5I3 272 aa11.17□□□□□ -0.62
SF3B1-204ENST00000414963 OR5T1Q8NG75 326 aa11.17□□□□□ -0.62
SF3B1-204ENST00000414963 OR2T6Q8NHC8 308 aa11.17□□□□□ -0.62
SF3B1-204ENST00000414963 NOL4LQ96MY1 436 aaPredicted RBP11.17□□□□□ -0.62
SF3B1-204ENST00000414963 FANCD2OSQ96PS1 177 aa11.17□□□□□ -0.62
SF3B1-204ENST00000414963 SERTAD4Q9NUC0 356 aa11.17□□□□□ -0.62
SF3B1-204ENST00000414963 HSPB11Q9Y547 144 aa11.17□□□□□ -0.62
SF3B1-204ENST00000414963 DMRT1Q9Y5R6 373 aa11.17□□□□□ -0.62
SF3B1-204ENST00000414963 IGLV11-55A0A075B6I3 123 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 76.6 ms