RNA–Protein interactions for RNA: ENST00000412061.3

BRCA1-204, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,312 nt, Biotype non stop decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-204ENST00000412061 TAS2R30P59541 319 aa2.78□□□□□ -1.96
BRCA1-204ENST00000412061 TMEM69Q5SWH9 247 aa2.78□□□□□ -1.96
BRCA1-204ENST00000412061 OR9Q1Q8NGQ5 310 aa2.78□□□□□ -1.96
BRCA1-204ENST00000412061 THEM6Q8WUY1 208 aa2.78□□□□□ -1.96
BRCA1-204ENST00000412061 HSPB9Q9BQS6 159 aa2.78□□□□□ -1.96
BRCA1-204ENST00000412061 SEC22CQ9BRL7 303 aa2.78□□□□□ -1.96
BRCA1-204ENST00000412061 DERL1Q9BUN8 251 aa2.78□□□□□ -1.96
BRCA1-204ENST00000412061 IMUPQ9GZP8 106 aa2.78□□□□□ -1.96
BRCA1-204ENST00000412061 PCTPQ9UKL6 214 aa2.78□□□□□ -1.96
BRCA1-204ENST00000412061 PTPRJQ12913 1337 aa2.78□□□□□ -1.96
BRCA1-204ENST00000412061 REREQ9P2R6 1566 aa2.77□□□□□ -1.97
BRCA1-204ENST00000412061 DUXBA0A1W2PPF3 345 aa2.77□□□□□ -1.97
BRCA1-204ENST00000412061 DHRS12A0PJE2 317 aa2.77□□□□□ -1.97
BRCA1-204ENST00000412061 C19orf71A6NCJ1 209 aa2.77□□□□□ -1.97
BRCA1-204ENST00000412061 C16orf90A8MZG2 172 aa2.77□□□□□ -1.97
BRCA1-204ENST00000412061 C1orf196B1AJZ1 125 aa2.77□□□□□ -1.97
BRCA1-204ENST00000412061 LEPROTO15243 131 aa2.77□□□□□ -1.97
BRCA1-204ENST00000412061 CASP1P29466 404 aa2.77□□□□□ -1.97
BRCA1-204ENST00000412061 SRP9P49458 86 aaKnown RBP2.77□□□□□ -1.97
BRCA1-204ENST00000412061 KLF3P57682 345 aaPredicted RBP2.77□□□□□ -1.97
BRCA1-204ENST00000412061 RPS11P62280 158 aaKnown RBP eCLIP2.77□□□□□ -1.97
BRCA1-204ENST00000412061 ZFAND6Q6FIF0 208 aa2.77□□□□□ -1.97
BRCA1-204ENST00000412061 ZNF322Q6U7Q0 402 aaPredicted RBP2.77□□□□□ -1.97
BRCA1-204ENST00000412061 LCA10Q71F78 164 aa2.77□□□□□ -1.97
BRCA1-204ENST00000412061 KTN1-AS1Q86SY8 53 aa2.77□□□□□ -1.97
BRCA1-204ENST00000412061 CLVS1Q8IUQ0 354 aaPredicted RBP2.77□□□□□ -1.97
BRCA1-204ENST00000412061 RPRMLQ8N4K4 120 aa2.77□□□□□ -1.97
BRCA1-204ENST00000412061 CNEP1R1Q8N9A8 125 aa2.77□□□□□ -1.97
BRCA1-204ENST00000412061 OR5C1Q8NGR4 320 aa2.77□□□□□ -1.97
BRCA1-204ENST00000412061 KLF14Q8TD94 323 aaPredicted RBP2.77□□□□□ -1.97
BRCA1-204ENST00000412061 CAPZA3Q96KX2 299 aa2.77□□□□□ -1.97
BRCA1-204ENST00000412061 OR2J1Q9GZK6 312 aa2.77□□□□□ -1.97
BRCA1-204ENST00000412061 RASL12Q9NYN1 266 aa2.77□□□□□ -1.97
BRCA1-204ENST00000412061 CCDC180Q9P1Z9 1646 aa2.77□□□□□ -1.97
BRCA1-204ENST00000412061 TRAV38-1A0A0B4J264 116 aa2.76□□□□□ -1.97
BRCA1-204ENST00000412061 ZNF98A6NK75 572 aa2.76□□□□□ -1.97
BRCA1-204ENST00000412061 SOD1P00441 154 aa2.76□□□□□ -1.97
BRCA1-204ENST00000412061 IGHV1-69P01742 117 aa2.76□□□□□ -1.97
BRCA1-204ENST00000412061 IGHV3-53P01767 116 aa2.76□□□□□ -1.97
BRCA1-204ENST00000412061 RPL7P18124 248 aaKnown RBP2.76□□□□□ -1.97
BRCA1-204ENST00000412061 ZNF80P51504 273 aaPredicted RBP2.76□□□□□ -1.97
BRCA1-204ENST00000412061 RBM11P57052 281 aaKnown RBP2.76□□□□□ -1.97
BRCA1-204ENST00000412061 CDC42P60953 191 aa2.76□□□□□ -1.97
BRCA1-204ENST00000412061 MEF2BQ02080 365 aaPredicted RBP2.76□□□□□ -1.97
BRCA1-204ENST00000412061 HTR4Q13639 388 aa2.76□□□□□ -1.97
BRCA1-204ENST00000412061 SMIM21Q3B7S5 101 aa2.76□□□□□ -1.97
BRCA1-204ENST00000412061 LGALSLQ3ZCW2 172 aaPredicted RBP2.76□□□□□ -1.97
BRCA1-204ENST00000412061 BRMS1LQ5PSV4 323 aa2.76□□□□□ -1.97
BRCA1-204ENST00000412061 ZNF767PQ75MW2 155 aa2.76□□□□□ -1.97
BRCA1-204ENST00000412061 TMEM86AQ8N2M4 240 aa2.76□□□□□ -1.97
BRCA1-204ENST00000412061 ZNF561Q8N587 486 aa2.76□□□□□ -1.97
BRCA1-204ENST00000412061 TM2D3Q9BRN9 247 aa2.76□□□□□ -1.97
BRCA1-204ENST00000412061 DOHHQ9BU89 302 aa2.76□□□□□ -1.97
BRCA1-204ENST00000412061 C16orf95Q9H693 158 aa2.76□□□□□ -1.97
BRCA1-204ENST00000412061 ZNF443Q9Y2A4 671 aaPredicted RBP2.76□□□□□ -1.97
BRCA1-204ENST00000412061 ZNF835Q9Y2P0 537 aa2.76□□□□□ -1.97
BRCA1-204ENST00000412061 S4R3C0 116 aa2.76□□□□□ -1.97
BRCA1-204ENST00000412061 ARAP1Q96P48 1450 aa2.76□□□□□ -1.97
BRCA1-204ENST00000412061 MYH11P35749 1972 aa2.76□□□□□ -1.97
BRCA1-204ENST00000412061 ECM29Q5VYK3 1845 aa2.76□□□□□ -1.97
BRCA1-204ENST00000412061 TECPR2O15040 1411 aa2.76□□□□□ -1.97
BRCA1-204ENST00000412061 OBSCNQ5VST9 7968 aa2.75□□□□□ -1.97
BRCA1-204ENST00000412061 GRIFINA4D1Z8 144 aa2.75□□□□□ -1.97
BRCA1-204ENST00000412061 EFCAB10A6NFE3 127 aa2.75□□□□□ -1.97
BRCA1-204ENST00000412061 C17orf51A8MQB3 221 aa2.75□□□□□ -1.97
BRCA1-204ENST00000412061 BUB1B-PAK6H3BSN5 160 aa2.75□□□□□ -1.97
BRCA1-204ENST00000412061 J3KT08 172 aa2.75□□□□□ -1.97
BRCA1-204ENST00000412061 TXNDC9O14530 226 aa2.75□□□□□ -1.97
BRCA1-204ENST00000412061 DEGS1O15121 323 aa2.75□□□□□ -1.97
BRCA1-204ENST00000412061 CYB5BO43169 146 aa2.75□□□□□ -1.97
BRCA1-204ENST00000412061 S100A4P26447 101 aaKnown RBP2.75□□□□□ -1.97
BRCA1-204ENST00000412061 HLA-DMBP28068 263 aa2.75□□□□□ -1.97
BRCA1-204ENST00000412061 CD200P41217 278 aa2.75□□□□□ -1.97
BRCA1-204ENST00000412061 AKR1C3P42330 323 aa2.75□□□□□ -1.97
BRCA1-204ENST00000412061 LPAR6P43657 344 aa2.75□□□□□ -1.97
BRCA1-204ENST00000412061 CKS1BP61024 79 aa2.75□□□□□ -1.97
BRCA1-204ENST00000412061 AP1S1P61966 158 aa2.75□□□□□ -1.97
BRCA1-204ENST00000412061 OR8B8Q15620 311 aa2.75□□□□□ -1.97
BRCA1-204ENST00000412061 ZNF880Q6PDB4 577 aa2.75□□□□□ -1.97
BRCA1-204ENST00000412061 CROCCP2Q86T23 111 aa2.75□□□□□ -1.97
BRCA1-204ENST00000412061 KRTAP11-1Q8IUC1 163 aa2.75□□□□□ -1.97
BRCA1-204ENST00000412061 NUP35Q8NFH5 326 aa2.75□□□□□ -1.97
BRCA1-204ENST00000412061 OR4D11Q8NGI4 311 aa2.75□□□□□ -1.97
BRCA1-204ENST00000412061 DNAJC9Q8WXX5 260 aa2.75□□□□□ -1.97
BRCA1-204ENST00000412061 ADAT3Q96EY9 351 aaPredicted RBP2.75□□□□□ -1.97
BRCA1-204ENST00000412061 PFDN5Q99471 154 aa2.75□□□□□ -1.97
BRCA1-204ENST00000412061 SMDT1Q9H4I9 107 aa2.75□□□□□ -1.97
BRCA1-204ENST00000412061 COL18A1P39060 1754 aa2.75□□□□□ -1.97
BRCA1-204ENST00000412061 TAF1LQ8IZX4 1826 aa2.75□□□□□ -1.97
BRCA1-204ENST00000412061 NACAE9PAV3 2078 aa2.75□□□□□ -1.97
BRCA1-204ENST00000412061 COL16A1Q07092 1604 aaPredicted RBP2.75□□□□□ -1.97
BRCA1-204ENST00000412061 ZNF407Q9C0G0 2248 aa2.75□□□□□ -1.97
BRCA1-204ENST00000412061 XIRP1Q702N8 1843 aaKnown RBP2.74□□□□□ -1.97
BRCA1-204ENST00000412061 IGLV3-16A0A075B6K0 115 aa2.74□□□□□ -1.97
BRCA1-204ENST00000412061 A0A087WX48 190 aa2.74□□□□□ -1.97
BRCA1-204ENST00000412061 IGHV3-73A0A0B4J1V6 119 aa2.74□□□□□ -1.97
BRCA1-204ENST00000412061 MDFIC2A0A1B0GVS7 189 aa2.74□□□□□ -1.97
BRCA1-204ENST00000412061 UBFD1O14562 309 aaKnown RBP2.74□□□□□ -1.97
BRCA1-204ENST00000412061 GADD45GO95257 159 aa2.74□□□□□ -1.97
BRCA1-204ENST00000412061 FAM107AO95990 144 aa2.74□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms