RNA–Protein interactions for RNA: ENST00000409694.6

SYNE1-210, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,634 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-210ENST00000409694 APC2O95996 2303 aa6.71□□□□□ -1.34
SYNE1-210ENST00000409694 TRBV5-5A0A0J9YX44 114 aa6.71□□□□□ -1.34
SYNE1-210ENST00000409694 COL9A1P20849 921 aa6.71□□□□□ -1.34
SYNE1-210ENST00000409694 ZNF415Q09FC8 603 aa6.71□□□□□ -1.34
SYNE1-210ENST00000409694 SSBP3Q9BWW4 388 aaPredicted RBP6.71□□□□□ -1.34
SYNE1-210ENST00000409694 Q9H3A6 140 aa6.71□□□□□ -1.34
SYNE1-210ENST00000409694 IFITM2Q01629 132 aa6.71□□□□□ -1.34
SYNE1-210ENST00000409694 MSRB3Q8IXL7 192 aa6.71□□□□□ -1.34
SYNE1-210ENST00000409694 APCDD1LQ8NCL9 501 aa6.71□□□□□ -1.34
SYNE1-210ENST00000409694 OR10W1Q8NGF6 305 aa6.71□□□□□ -1.34
SYNE1-210ENST00000409694 ITLN1Q8WWA0 313 aa6.71□□□□□ -1.34
SYNE1-210ENST00000409694 CARHSP1Q9Y2V2 147 aaKnown RBP6.71□□□□□ -1.34
SYNE1-210ENST00000409694 LTBP4Q8N2S1 1624 aa6.71□□□□□ -1.34
SYNE1-210ENST00000409694 CD7P09564 240 aa6.71□□□□□ -1.34
SYNE1-210ENST00000409694 C1QTNF12Q5T7M4 302 aa6.71□□□□□ -1.34
SYNE1-210ENST00000409694 GATD1Q8NB37 220 aa6.71□□□□□ -1.34
SYNE1-210ENST00000409694 TRAV8-1A0A0A6YYK1 113 aa6.7□□□□□ -1.34
SYNE1-210ENST00000409694 RASL11AQ6T310 242 aa6.7□□□□□ -1.34
SYNE1-210ENST00000409694 ZNF721Q8TF20 911 aa6.7□□□□□ -1.34
SYNE1-210ENST00000409694 KIAA0040Q15053 153 aa6.7□□□□□ -1.34
SYNE1-210ENST00000409694 PVRIGQ6DKI7 326 aa6.7□□□□□ -1.34
SYNE1-210ENST00000409694 MYO7BQ6PIF6 2116 aa6.7□□□□□ -1.34
SYNE1-210ENST00000409694 LINC00158P58513 81 aa6.7□□□□□ -1.34
SYNE1-210ENST00000409694 PSG4Q00888 419 aa6.7□□□□□ -1.34
SYNE1-210ENST00000409694 LY6EQ16553 131 aa6.7□□□□□ -1.34
SYNE1-210ENST00000409694 NHLRC3Q5JS37 347 aa6.7□□□□□ -1.34
SYNE1-210ENST00000409694 PRSS41Q7RTY9 318 aa6.7□□□□□ -1.34
SYNE1-210ENST00000409694 C1orf162Q8NEQ5 155 aaPredicted RBP6.7□□□□□ -1.34
SYNE1-210ENST00000409694 VKORC1Q9BQB6 163 aa6.7□□□□□ -1.34
SYNE1-210ENST00000409694 ESDP10768 282 aa6.7□□□□□ -1.34
SYNE1-210ENST00000409694 OR52E5Q8NH55 327 aa6.7□□□□□ -1.34
SYNE1-210ENST00000409694 UCN2Q96RP3 112 aa6.7□□□□□ -1.34
SYNE1-210ENST00000409694 HEATR5AQ86XA9 2040 aa6.7□□□□□ -1.34
SYNE1-210ENST00000409694 TRGV4A0A0C4DH28 118 aa6.7□□□□□ -1.34
SYNE1-210ENST00000409694 MESP2Q0VG99 397 aa6.7□□□□□ -1.34
SYNE1-210ENST00000409694 C3AR1Q16581 482 aa6.7□□□□□ -1.34
SYNE1-210ENST00000409694 C9orf40Q8IXQ3 194 aa6.7□□□□□ -1.34
SYNE1-210ENST00000409694 DUSP15Q9H1R2 295 aaPredicted RBP6.7□□□□□ -1.34
SYNE1-210ENST00000409694 C21orf62Q9NYP8 219 aa6.7□□□□□ -1.34
SYNE1-210ENST00000409694 LOC101059915A0A1B0GWI6 518 aaPredicted RBP6.7□□□□□ -1.34
SYNE1-210ENST00000409694 PLA2G10O15496 165 aa6.7□□□□□ -1.34
SYNE1-210ENST00000409694 SUMO4Q6EEV6 95 aa6.7□□□□□ -1.34
SYNE1-210ENST00000409694 C5orf66Q9H5L9 145 aa6.7□□□□□ -1.34
SYNE1-210ENST00000409694 CACNA1DQ01668 2161 aa6.7□□□□□ -1.34
SYNE1-210ENST00000409694 TRAV5A0A0B4J249 113 aa6.7□□□□□ -1.34
SYNE1-210ENST00000409694 FABP5P3A8MUU1 101 aa6.7□□□□□ -1.34
SYNE1-210ENST00000409694 TMEM187Q14656 261 aa6.7□□□□□ -1.34
SYNE1-210ENST00000409694 ZIC4Q8N9L1 334 aa6.7□□□□□ -1.34
SYNE1-210ENST00000409694 NEU4Q8WWR8 484 aaPredicted RBP6.7□□□□□ -1.34
SYNE1-210ENST00000409694 BRWD1Q9NSI6 2320 aa6.7□□□□□ -1.34
SYNE1-210ENST00000409694 LY75O60449 1722 aa6.7□□□□□ -1.34
SYNE1-210ENST00000409694 IGHV3-72A0A0B4J1Y9 119 aa6.7□□□□□ -1.34
SYNE1-210ENST00000409694 Q96M66 194 aa6.7□□□□□ -1.34
SYNE1-210ENST00000409694 IFI27L2Q9H2X8 130 aa6.7□□□□□ -1.34
SYNE1-210ENST00000409694 GSN-AS1Q9NRJ2 163 aa6.7□□□□□ -1.34
SYNE1-210ENST00000409694 IGHV1-45A0A0A0MS14 117 aa6.69□□□□□ -1.34
SYNE1-210ENST00000409694 HYAL3O43820 417 aaPredicted RBP6.69□□□□□ -1.34
SYNE1-210ENST00000409694 IGKV3-20P01619 116 aa6.69□□□□□ -1.34
SYNE1-210ENST00000409694 MOSP00540 346 aa6.69□□□□□ -1.34
SYNE1-210ENST00000409694 VN1R4Q7Z5H5 301 aa6.69□□□□□ -1.34
SYNE1-210ENST00000409694 PPP1R27Q86WC6 154 aa6.69□□□□□ -1.34
SYNE1-210ENST00000409694 DLL3Q9NYJ7 618 aa6.69□□□□□ -1.34
SYNE1-210ENST00000409694 MYF5P13349 255 aa6.69□□□□□ -1.34
SYNE1-210ENST00000409694 EFNB1P98172 346 aa6.69□□□□□ -1.34
SYNE1-210ENST00000409694 NPDC1Q9NQX5 325 aaPredicted RBP6.69□□□□□ -1.34
SYNE1-210ENST00000409694 TRPM7Q96QT4 1865 aa6.69□□□□□ -1.34
SYNE1-210ENST00000409694 IGKV1D-42A0A075B6H8 117 aa6.69□□□□□ -1.34
SYNE1-210ENST00000409694 RIPPLY3P57055 190 aa6.69□□□□□ -1.34
SYNE1-210ENST00000409694 LURAP1LQ8IV03 231 aa6.69□□□□□ -1.34
SYNE1-210ENST00000409694 FBXL7Q9UJT9 491 aa6.69□□□□□ -1.34
SYNE1-210ENST00000409694 AHDC1Q5TGY3 1603 aaPredicted RBP6.69□□□□□ -1.34
SYNE1-210ENST00000409694 FAM90A9PA6NNJ1 464 aa6.69□□□□□ -1.34
SYNE1-210ENST00000409694 C1orf100Q5SVJ3 147 aa6.69□□□□□ -1.34
SYNE1-210ENST00000409694 C2orf82Q6UX34 121 aa6.69□□□□□ -1.34
SYNE1-210ENST00000409694 CD5LO43866 347 aa6.69□□□□□ -1.34
SYNE1-210ENST00000409694 CEACAM8P31997 349 aaPredicted RBP6.69□□□□□ -1.34
SYNE1-210ENST00000409694 TMEM258P61165 79 aa6.69□□□□□ -1.34
SYNE1-210ENST00000409694 EGR4Q05215 589 aa6.69□□□□□ -1.34
SYNE1-210ENST00000409694 MRAPQ8TCY5 172 aa6.69□□□□□ -1.34
SYNE1-210ENST00000409694 OR5P3Q8WZ94 311 aa6.69□□□□□ -1.34
SYNE1-210ENST00000409694 NPIPB3Q92617 1050 aa6.69□□□□□ -1.34
SYNE1-210ENST00000409694 FGF11Q92914 225 aa6.69□□□□□ -1.34
SYNE1-210ENST00000409694 PNKDQ8N490 385 aa6.69□□□□□ -1.34
SYNE1-210ENST00000409694 OR13A1Q8NGR1 328 aa6.69□□□□□ -1.34
SYNE1-210ENST00000409694 RASL10AQ92737 203 aa6.69□□□□□ -1.34
SYNE1-210ENST00000409694 FOXA2Q9Y261 457 aaPredicted RBP6.69□□□□□ -1.34
SYNE1-210ENST00000409694 MPDZO75970 2070 aa6.68□□□□□ -1.34
SYNE1-210ENST00000409694 THADAQ6YHU6 1953 aa6.68□□□□□ -1.34
SYNE1-210ENST00000409694 NPIPB13A6NJU9 1138 aa6.68□□□□□ -1.34
SYNE1-210ENST00000409694 PSCAO43653 123 aa6.68□□□□□ -1.34
SYNE1-210ENST00000409694 FUT5Q11128 374 aa6.68□□□□□ -1.34
SYNE1-210ENST00000409694 PLPPR1Q8TBJ4 325 aa6.68□□□□□ -1.34
SYNE1-210ENST00000409694 PKIGQ9Y2B9 76 aa6.68□□□□□ -1.34
SYNE1-210ENST00000409694 GP6Q9HCN6 339 aa6.68□□□□□ -1.34
SYNE1-210ENST00000409694 NRXN3Q9Y4C0 1643 aa6.68□□□□□ -1.34
SYNE1-210ENST00000409694 APOBEC3AP31941 199 aaPredicted RBP6.68□□□□□ -1.34
SYNE1-210ENST00000409694 NDUFAF3Q9BU61 184 aa6.68□□□□□ -1.34
SYNE1-210ENST00000409694 F5P12259 2224 aa6.68□□□□□ -1.34
SYNE1-210ENST00000409694 C1QL1O75973 258 aa6.68□□□□□ -1.34
SYNE1-210ENST00000409694 RCC1LQ96I51 464 aaKnown RBP6.68□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms