RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 ZNF766Q5HY98 468 aa10.02□□□□□ -0.81
HMGB1-206ENST00000405805 CDC42EP3Q9UKI2 254 aa10.02□□□□□ -0.81
HMGB1-206ENST00000405805 A0A087X0K7 114 aa10.01□□□□□ -0.81
HMGB1-206ENST00000405805 OR2J3O76001 311 aa10.01□□□□□ -0.81
HMGB1-206ENST00000405805 AZU1P20160 251 aa10.01□□□□□ -0.81
HMGB1-206ENST00000405805 GATA2P23769 480 aaPredicted RBP10.01□□□□□ -0.81
HMGB1-206ENST00000405805 PAX9P55771 341 aa10.01□□□□□ -0.81
HMGB1-206ENST00000405805 RTL8BQ17RB0 113 aa10.01□□□□□ -0.81
HMGB1-206ENST00000405805 RPL39P5Q59GN2 51 aa10.01□□□□□ -0.81
HMGB1-206ENST00000405805 TGIF2LYQ8IUE0 185 aa10.01□□□□□ -0.81
HMGB1-206ENST00000405805 TMEM116Q8NCL8 245 aa10.01□□□□□ -0.81
HMGB1-206ENST00000405805 PROK2Q9HC23 129 aa10.01□□□□□ -0.81
HMGB1-206ENST00000405805 IGHV3-21A0A0B4J1V1 117 aa10.01□□□□□ -0.81
HMGB1-206ENST00000405805 ZNF503-AS2A6NEH8 195 aa10.01□□□□□ -0.81
HMGB1-206ENST00000405805 C22orf46C9J442 243 aa10.01□□□□□ -0.81
HMGB1-206ENST00000405805 RPL30P62888 115 aaKnown RBP10.01□□□□□ -0.81
HMGB1-206ENST00000405805 Q0VFX4 171 aa10.01□□□□□ -0.81
HMGB1-206ENST00000405805 RNPS1Q15287 305 aaKnown RBP10.01□□□□□ -0.81
HMGB1-206ENST00000405805 CYP2G1PQ6ZSU1 146 aa10.01□□□□□ -0.81
HMGB1-206ENST00000405805 ZNRF1Q8ND25 227 aa10.01□□□□□ -0.81
HMGB1-206ENST00000405805 CHTOPQ9Y3Y2 248 aaKnown RBP10.01□□□□□ -0.81
HMGB1-206ENST00000405805 LSM4Q9Y4Z0 139 aaKnown RBP10.01□□□□□ -0.81
HMGB1-206ENST00000405805 PXMP4Q9Y6I8 212 aa10.01□□□□□ -0.81
HMGB1-206ENST00000405805 LOC105371242A0A075B767 164 aa10.01□□□□□ -0.81
HMGB1-206ENST00000405805 PPIAL4CA0A0B4J2A2 164 aa10.01□□□□□ -0.81
HMGB1-206ENST00000405805 PPIAL4GP0DN37 164 aa10.01□□□□□ -0.81
HMGB1-206ENST00000405805 ZNF324BQ6AW86 544 aaPredicted RBP10.01□□□□□ -0.81
HMGB1-206ENST00000405805 Q8IYB0 196 aa10.01□□□□□ -0.81
HMGB1-206ENST00000405805 TMEM178AQ8NBL3 297 aa10.01□□□□□ -0.81
HMGB1-206ENST00000405805 SSBP3Q9BWW4 388 aaPredicted RBP10.01□□□□□ -0.81
HMGB1-206ENST00000405805 LRRC30A6NM36 301 aa10□□□□□ -0.81
HMGB1-206ENST00000405805 PRSS1P07477 247 aa10□□□□□ -0.81
HMGB1-206ENST00000405805 CEACAM3P40198 252 aa10□□□□□ -0.81
HMGB1-206ENST00000405805 ANXA2RQ3ZCQ2 193 aa10□□□□□ -0.81
HMGB1-206ENST00000405805 C1orf174Q8IYL3 243 aa10□□□□□ -0.81
HMGB1-206ENST00000405805 TMSB15BA0A087X1C1 80 aa10□□□□□ -0.81
HMGB1-206ENST00000405805 PSPNO60542 156 aa10□□□□□ -0.81
HMGB1-206ENST00000405805 RBX1P62877 108 aa10□□□□□ -0.81
HMGB1-206ENST00000405805 SLAQ13239 276 aa10□□□□□ -0.81
HMGB1-206ENST00000405805 MMD2Q8IY49 270 aa10□□□□□ -0.81
HMGB1-206ENST00000405805 SAXO1Q8IYX7 474 aa10□□□□□ -0.81
HMGB1-206ENST00000405805 FER1L6-AS1Q8NA97 138 aa10□□□□□ -0.81
HMGB1-206ENST00000405805 MCRIP2Q9BUT9 160 aaKnown RBP10□□□□□ -0.81
HMGB1-206ENST00000405805 TECTAO75443 2155 aa10□□□□□ -0.81
HMGB1-206ENST00000405805 IL6RP08887 468 aaPredicted RBP10□□□□□ -0.81
HMGB1-206ENST00000405805 PRSS8Q16651 343 aa10□□□□□ -0.81
HMGB1-206ENST00000405805 DNLZQ5SXM8 178 aa10□□□□□ -0.81
HMGB1-206ENST00000405805 MOGAT3Q86VF5 341 aa10□□□□□ -0.81
HMGB1-206ENST00000405805 DOLPP1Q86YN1 238 aa10□□□□□ -0.81
HMGB1-206ENST00000405805 ZNF418Q8TF45 676 aaPredicted RBP10□□□□□ -0.81
HMGB1-206ENST00000405805 POM121L2Q96KW2 1035 aa10□□□□□ -0.81
HMGB1-206ENST00000405805 GUCD1Q96NT3 240 aa10□□□□□ -0.81
HMGB1-206ENST00000405805 ATP6V0BQ99437 205 aa10□□□□□ -0.81
HMGB1-206ENST00000405805 NPCDR1Q9BY65 106 aa10□□□□□ -0.81
HMGB1-206ENST00000405805 OR51B2Q9Y5P1 312 aa10□□□□□ -0.81
HMGB1-206ENST00000405805 FRYLO94915 3013 aa10□□□□□ -0.81
HMGB1-206ENST00000405805 ATRXP46100 2492 aa10□□□□□ -0.81
HMGB1-206ENST00000405805 OOEPA6NGQ2 149 aa10□□□□□ -0.81
HMGB1-206ENST00000405805 FOXI3A8MTJ6 420 aaPredicted RBP10□□□□□ -0.81
HMGB1-206ENST00000405805 FAM157AC9JC47 383 aa10□□□□□ -0.81
HMGB1-206ENST00000405805 HYPMO75409 117 aa10□□□□□ -0.81
HMGB1-206ENST00000405805 TGFAP01135 160 aa10□□□□□ -0.81
HMGB1-206ENST00000405805 MED12LQ86YW9 2145 aa10□□□□□ -0.81
HMGB1-206ENST00000405805 TRAV26-1A0A087WT03 109 aa9.99□□□□□ -0.81
HMGB1-206ENST00000405805 SCO2A0A1W2PP80 73 aa9.99□□□□□ -0.81
HMGB1-206ENST00000405805 CLDN14O95500 239 aa9.99□□□□□ -0.81
HMGB1-206ENST00000405805 EMP1P54849 157 aa9.99□□□□□ -0.81
HMGB1-206ENST00000405805 ZNF726P1Q15940 193 aa9.99□□□□□ -0.81
HMGB1-206ENST00000405805 HES4Q9HCC6 221 aa9.99□□□□□ -0.81
HMGB1-206ENST00000405805 CUL9Q8IWT3 2517 aa9.99□□□□□ -0.81
HMGB1-206ENST00000405805 SPG11Q96JI7 2443 aa9.99□□□□□ -0.81
HMGB1-206ENST00000405805 LOC389332A0A1B0GUA5 103 aa9.99□□□□□ -0.81
HMGB1-206ENST00000405805 RRHO14718 337 aa9.99□□□□□ -0.81
HMGB1-206ENST00000405805 ARF6P62330 175 aa9.99□□□□□ -0.81
HMGB1-206ENST00000405805 FAM169BQ8N8A8 192 aa9.99□□□□□ -0.81
HMGB1-206ENST00000405805 DEFB124Q8NES8 71 aa9.99□□□□□ -0.81
HMGB1-206ENST00000405805 OR13A1Q8NGR1 328 aa9.99□□□□□ -0.81
HMGB1-206ENST00000405805 KLF14Q8TD94 323 aaPredicted RBP9.99□□□□□ -0.81
HMGB1-206ENST00000405805 IL36GQ9NZH8 169 aa9.99□□□□□ -0.81
HMGB1-206ENST00000405805 WDFY4Q6ZS81 3184 aa9.99□□□□□ -0.81
HMGB1-206ENST00000405805 HELTA6NFD8 242 aa9.99□□□□□ -0.81
HMGB1-206ENST00000405805 IGKV1D-33P01593 117 aa9.99□□□□□ -0.81
HMGB1-206ENST00000405805 IGKV1-33P01594 117 aa9.99□□□□□ -0.81
HMGB1-206ENST00000405805 MPV17P39210 176 aa9.99□□□□□ -0.81
HMGB1-206ENST00000405805 PSG9Q00887 426 aa9.99□□□□□ -0.81
HMGB1-206ENST00000405805 PSG7Q13046 419 aa9.99□□□□□ -0.81
HMGB1-206ENST00000405805 PLGLAQ15195 96 aa9.99□□□□□ -0.81
HMGB1-206ENST00000405805 TMEM42Q69YG0 159 aa9.99□□□□□ -0.81
HMGB1-206ENST00000405805 C20orf144Q9BQM9 153 aa9.99□□□□□ -0.81
HMGB1-206ENST00000405805 TMEM70Q9BUB7 260 aa9.99□□□□□ -0.81
HMGB1-206ENST00000405805 TSSC4Q9Y5U2 329 aaPredicted RBP9.99□□□□□ -0.81
HMGB1-206ENST00000405805 DOPEY2Q9Y3R5 2298 aa9.98□□□□□ -0.81
HMGB1-206ENST00000405805 H3BTX0 84 aa9.98□□□□□ -0.81
HMGB1-206ENST00000405805 GPR6P46095 362 aaPredicted RBP9.98□□□□□ -0.81
HMGB1-206ENST00000405805 ZFP36L1Q07352 338 aaKnown RBP9.98□□□□□ -0.81
HMGB1-206ENST00000405805 PCSK4Q6UW60 755 aa9.98□□□□□ -0.81
HMGB1-206ENST00000405805 SMIM20Q8N5G0 67 aa9.98□□□□□ -0.81
HMGB1-206ENST00000405805 ADTRPQ96IZ2 230 aa9.98□□□□□ -0.81
HMGB1-206ENST00000405805 P2RX4Q99571 388 aa9.98□□□□□ -0.81
HMGB1-206ENST00000405805 COMMD5Q9GZQ3 224 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms