RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 ERASQ7Z444 233 aa9.05□□□□□ -0.96
CCDC40-204ENST00000397545 WFDC3Q8IUB2 231 aa9.05□□□□□ -0.96
CCDC40-204ENST00000397545 FDCSPQ8NFU4 85 aa9.05□□□□□ -0.96
CCDC40-204ENST00000397545 KCNS1Q96KK3 526 aa9.05□□□□□ -0.96
CCDC40-204ENST00000397545 JPT1Q9UK76 154 aa9.05□□□□□ -0.96
CCDC40-204ENST00000397545 IGLV3-12A0A075B6K2 115 aa9.05□□□□□ -0.96
CCDC40-204ENST00000397545 ADCYAP1P18509 176 aa9.05□□□□□ -0.96
CCDC40-204ENST00000397545 HGFACQ04756 655 aa9.05□□□□□ -0.96
CCDC40-204ENST00000397545 GOLT1AQ6ZVE7 132 aa9.05□□□□□ -0.96
CCDC40-204ENST00000397545 FAM216BQ8N7L0 139 aa9.05□□□□□ -0.96
CCDC40-204ENST00000397545 LINC00469Q8N7U9 141 aa9.05□□□□□ -0.96
CCDC40-204ENST00000397545 ZIC4Q8N9L1 334 aa9.05□□□□□ -0.96
CCDC40-204ENST00000397545 IDI2-AS1Q9NZ38 188 aa9.05□□□□□ -0.96
CCDC40-204ENST00000397545 TRBV6-7A0A0A0MS04 114 aa9.05□□□□□ -0.96
CCDC40-204ENST00000397545 TRAV24A0A0B4J272 114 aa9.05□□□□□ -0.96
CCDC40-204ENST00000397545 MGPP08493 103 aa9.05□□□□□ -0.96
CCDC40-204ENST00000397545 CCL1P22362 96 aa9.05□□□□□ -0.96
CCDC40-204ENST00000397545 SRSF9Q13242 221 aaKnown RBP eCLIP9.05□□□□□ -0.96
CCDC40-204ENST00000397545 HEPN1Q6WQI6 88 aa9.05□□□□□ -0.96
CCDC40-204ENST00000397545 RNF166Q96A37 237 aaPredicted RBP9.05□□□□□ -0.96
CCDC40-204ENST00000397545 DCAF16Q9NXF7 216 aa9.05□□□□□ -0.96
CCDC40-204ENST00000397545 DPRXA6NFQ7 191 aa9.04□□□□□ -0.96
CCDC40-204ENST00000397545 C9JQL5 133 aa9.04□□□□□ -0.96
CCDC40-204ENST00000397545 TWIST1Q15672 202 aa9.04□□□□□ -0.96
CCDC40-204ENST00000397545 SPANXN1Q5VSR9 72 aa9.04□□□□□ -0.96
CCDC40-204ENST00000397545 SCNM1Q9BWG6 230 aa9.04□□□□□ -0.96
CCDC40-204ENST00000397545 CKS2P33552 79 aa9.04□□□□□ -0.96
CCDC40-204ENST00000397545 ARF6P62330 175 aa9.04□□□□□ -0.96
CCDC40-204ENST00000397545 ACP7Q6ZNF0 438 aa9.04□□□□□ -0.96
CCDC40-204ENST00000397545 LINC00470Q9BZP3 86 aa9.04□□□□□ -0.96
CCDC40-204ENST00000397545 TBL2Q9Y4P3 447 aaKnown RBP9.04□□□□□ -0.96
CCDC40-204ENST00000397545 C5orf52A6NGY3 159 aa9.04□□□□□ -0.96
CCDC40-204ENST00000397545 AHRRA9YTQ3 701 aa9.04□□□□□ -0.96
CCDC40-204ENST00000397545 M0QZ24 198 aa9.04□□□□□ -0.96
CCDC40-204ENST00000397545 VENTXO95231 258 aa9.04□□□□□ -0.96
CCDC40-204ENST00000397545 BTF3P20290 206 aaKnown RBP9.04□□□□□ -0.96
CCDC40-204ENST00000397545 GPR6P46095 362 aaPredicted RBP9.04□□□□□ -0.96
CCDC40-204ENST00000397545 ERVFRD-1P60508 538 aa9.04□□□□□ -0.96
CCDC40-204ENST00000397545 DMRTA1Q5VZB9 504 aa9.04□□□□□ -0.96
CCDC40-204ENST00000397545 MIR17HGQ75NE6 70 aa9.04□□□□□ -0.96
CCDC40-204ENST00000397545 ZNF716A6NP11 495 aa9.03□□□□□ -0.96
CCDC40-204ENST00000397545 F2RL2O00254 374 aa9.03□□□□□ -0.96
CCDC40-204ENST00000397545 Q6ZT83 130 aa9.03□□□□□ -0.96
CCDC40-204ENST00000397545 ZCCHC24Q8N2G6 241 aaKnown RBP9.03□□□□□ -0.96
CCDC40-204ENST00000397545 WDYHV1Q96HA8 205 aa9.03□□□□□ -0.96
CCDC40-204ENST00000397545 SLC25A33Q9BSK2 321 aa9.03□□□□□ -0.96
CCDC40-204ENST00000397545 IGHV3OR16-8A0A075B7F1 116 aa9.03□□□□□ -0.96
CCDC40-204ENST00000397545 A0A087WWC5 75 aa9.03□□□□□ -0.96
CCDC40-204ENST00000397545 TMEM189A5PLL7 270 aa9.03□□□□□ -0.96
CCDC40-204ENST00000397545 AMY1AP04745 511 aa9.03□□□□□ -0.96
CCDC40-204ENST00000397545 PMCHL1Q16048 86 aa9.03□□□□□ -0.96
CCDC40-204ENST00000397545 WDR31Q8NA23 367 aa9.03□□□□□ -0.96
CCDC40-204ENST00000397545 OR4D5Q8NGN0 318 aa9.03□□□□□ -0.96
CCDC40-204ENST00000397545 RNASE7Q9H1E1 156 aaKnown RBP9.03□□□□□ -0.96
CCDC40-204ENST00000397545 A6NDN8 102 aa9.03□□□□□ -0.96
CCDC40-204ENST00000397545 UBE2CO00762 179 aa9.03□□□□□ -0.96
CCDC40-204ENST00000397545 SERF1AO75920 110 aa9.03□□□□□ -0.96
CCDC40-204ENST00000397545 MPZP25189 248 aa9.03□□□□□ -0.96
CCDC40-204ENST00000397545 FAM27E3Q08E93 113 aa9.03□□□□□ -0.96
CCDC40-204ENST00000397545 PRR31Q5SQ13 230 aa9.03□□□□□ -0.96
CCDC40-204ENST00000397545 RABAC1Q9UI14 185 aa9.03□□□□□ -0.96
CCDC40-204ENST00000397545 GTF3C1Q12789 2109 aa9.03□□□□□ -0.96
CCDC40-204ENST00000397545 PINLYPA6NC86 204 aa9.02□□□□□ -0.96
CCDC40-204ENST00000397545 GAGE10A6NGK3 116 aa9.02□□□□□ -0.96
CCDC40-204ENST00000397545 CD33P20138 364 aa9.02□□□□□ -0.96
CCDC40-204ENST00000397545 MC5RP33032 325 aa9.02□□□□□ -0.96
CCDC40-204ENST00000397545 PCP4P48539 62 aa9.02□□□□□ -0.96
CCDC40-204ENST00000397545 TMEM171Q8WVE6 324 aa9.02□□□□□ -0.96
CCDC40-204ENST00000397545 F11RQ9Y624 299 aaKnown RBP9.02□□□□□ -0.96
CCDC40-204ENST00000397545 K7ERU9 68 aa9.02□□□□□ -0.97
CCDC40-204ENST00000397545 FOLR2P14207 255 aa9.02□□□□□ -0.97
CCDC40-204ENST00000397545 CTSSP25774 331 aa9.02□□□□□ -0.97
CCDC40-204ENST00000397545 GFRA1P56159 465 aa9.02□□□□□ -0.97
CCDC40-204ENST00000397545 LCN2P80188 198 aa9.02□□□□□ -0.97
CCDC40-204ENST00000397545 C1orf185Q5T7R7 199 aa9.02□□□□□ -0.97
CCDC40-204ENST00000397545 MBNL2Q5VZF2 373 aaKnown RBP9.02□□□□□ -0.97
CCDC40-204ENST00000397545 SLC25A34Q6PIV7 304 aa9.02□□□□□ -0.97
CCDC40-204ENST00000397545 OR4A5Q8NH83 315 aa9.02□□□□□ -0.97
CCDC40-204ENST00000397545 HIST1H2BLQ99880 126 aa9.02□□□□□ -0.97
CCDC40-204ENST00000397545 PARD6GQ9BYG4 376 aaPredicted RBP9.02□□□□□ -0.97
CCDC40-204ENST00000397545 C1RLQ9NZP8 487 aa9.02□□□□□ -0.97
CCDC40-204ENST00000397545 GCSHP23434 173 aa9.02□□□□□ -0.97
CCDC40-204ENST00000397545 KIR2DL2P43627 348 aaPredicted RBP9.02□□□□□ -0.97
CCDC40-204ENST00000397545 LINC00305Q7Z4B0 112 aa9.02□□□□□ -0.97
CCDC40-204ENST00000397545 OR4C13Q8NGP0 309 aa9.02□□□□□ -0.97
CCDC40-204ENST00000397545 ZNF502Q8TBZ5 544 aa9.02□□□□□ -0.97
CCDC40-204ENST00000397545 DMRTA2Q96SC8 542 aa9.02□□□□□ -0.97
CCDC40-204ENST00000397545 KLK15Q9H2R5 256 aa9.02□□□□□ -0.97
CCDC40-204ENST00000397545 CFAP54Q96N23 3096 aa9.02□□□□□ -0.97
CCDC40-204ENST00000397545 EML5Q05BV3 1969 aa9.02□□□□□ -0.97
CCDC40-204ENST00000397545 RBFOX2O43251 390 aaKnown RBP eCLIP9.02□□□□□ -0.97
CCDC40-204ENST00000397545 CIDEAO60543 219 aa9.02□□□□□ -0.97
CCDC40-204ENST00000397545 KLF7O75840 302 aaPredicted RBP9.02□□□□□ -0.97
CCDC40-204ENST00000397545 PRR7Q8TB68 274 aa9.02□□□□□ -0.97
CCDC40-204ENST00000397545 UBTD1Q9HAC8 227 aa9.02□□□□□ -0.97
CCDC40-204ENST00000397545 CRYGSP22914 178 aa9.01□□□□□ -0.97
CCDC40-204ENST00000397545 PSMB2P49721 201 aa9.01□□□□□ -0.97
CCDC40-204ENST00000397545 PYY3Q5JQD4 70 aa9.01□□□□□ -0.97
CCDC40-204ENST00000397545 C1QL4Q86Z23 238 aa9.01□□□□□ -0.97
CCDC40-204ENST00000397545 NABP1Q96AH0 204 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms