RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 C9orf66Q5T8R8 295 aa16.7■□□□□ 0.26
CLN3-207ENST00000395653 S100ZQ8WXG8 99 aa16.7■□□□□ 0.26
CLN3-207ENST00000395653 CCDC32Q9BV29 185 aa16.7■□□□□ 0.26
CLN3-207ENST00000395653 DMRT1Q9Y5R6 373 aa16.7■□□□□ 0.26
CLN3-207ENST00000395653 F11RQ9Y624 299 aaKnown RBP16.7■□□□□ 0.26
CLN3-207ENST00000395653 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP16.69■□□□□ 0.26
CLN3-207ENST00000395653 TRBV12-3P01733 135 aa16.69■□□□□ 0.26
CLN3-207ENST00000395653 CCR6P51684 374 aa16.69■□□□□ 0.26
CLN3-207ENST00000395653 SRPXP78539 464 aa16.69■□□□□ 0.26
CLN3-207ENST00000395653 OR1L6Q8NGR2 347 aa16.69■□□□□ 0.26
CLN3-207ENST00000395653 LINC00854A0A1B0GVQ3 168 aa16.68■□□□□ 0.26
CLN3-207ENST00000395653 ST8SIA3O43173 380 aa16.68■□□□□ 0.26
CLN3-207ENST00000395653 NDUFB6O95139 128 aa16.68■□□□□ 0.26
CLN3-207ENST00000395653 EGFEM1PQ0D2K5 195 aa16.68■□□□□ 0.26
CLN3-207ENST00000395653 AARDQ4LEZ3 155 aa16.68■□□□□ 0.26
CLN3-207ENST00000395653 CENPSQ8N2Z9 138 aa16.68■□□□□ 0.26
CLN3-207ENST00000395653 SLC35G3Q8N808 338 aa16.68■□□□□ 0.26
CLN3-207ENST00000395653 CXorf58Q96LI9 332 aa16.68■□□□□ 0.26
CLN3-207ENST00000395653 PDCD10Q9BUL8 212 aa16.68■□□□□ 0.26
CLN3-207ENST00000395653 PLEKHA3Q9HB20 300 aa16.68■□□□□ 0.26
CLN3-207ENST00000395653 PIGBOS1A0A0B4J2F0 54 aa16.67■□□□□ 0.26
CLN3-207ENST00000395653 INSL3P51460 131 aa16.67■□□□□ 0.26
CLN3-207ENST00000395653 Q6ZRM9 215 aa16.67■□□□□ 0.26
CLN3-207ENST00000395653 OR2C3Q8N628 320 aa16.67■□□□□ 0.26
CLN3-207ENST00000395653 ZNF114Q8NC26 417 aa16.67■□□□□ 0.26
CLN3-207ENST00000395653 EEF1AKMT3Q96AZ1 226 aa16.67■□□□□ 0.26
CLN3-207ENST00000395653 A0A0B4J2A0 478 aa16.66■□□□□ 0.26
CLN3-207ENST00000395653 INS-IGF2F8WCM5 200 aa16.66■□□□□ 0.26
CLN3-207ENST00000395653 IFNA17P01571 189 aa16.66■□□□□ 0.26
CLN3-207ENST00000395653 BTCP35070 178 aa16.66■□□□□ 0.26
CLN3-207ENST00000395653 KLF5Q13887 457 aaPredicted RBP16.66■□□□□ 0.26
CLN3-207ENST00000395653 SLC25A24Q6NUK1 477 aa16.66■□□□□ 0.26
CLN3-207ENST00000395653 REC114Q7Z4M0 266 aa16.66■□□□□ 0.26
CLN3-207ENST00000395653 LGI3Q8N145 548 aa16.66■□□□□ 0.26
CLN3-207ENST00000395653 OR1P1Q8NH06 330 aa16.66■□□□□ 0.26
CLN3-207ENST00000395653 GPR146Q96CH1 333 aa16.66■□□□□ 0.26
CLN3-207ENST00000395653 CCDC140Q96MF4 163 aa16.66■□□□□ 0.26
CLN3-207ENST00000395653 CTNNBIP1Q9NSA3 81 aaPredicted RBP16.66■□□□□ 0.26
CLN3-207ENST00000395653 PRR13Q9NZ81 148 aa16.66■□□□□ 0.26
CLN3-207ENST00000395653 SHPKQ9UHJ6 478 aa16.66■□□□□ 0.26
CLN3-207ENST00000395653 TRBV7-1A0A0A6YYK4 115 aa16.65■□□□□ 0.26
CLN3-207ENST00000395653 MFSD2BA6NFX1 497 aa16.65■□□□□ 0.26
CLN3-207ENST00000395653 BMPR1BO00238 502 aa16.65■□□□□ 0.26
CLN3-207ENST00000395653 VAMP1P23763 118 aa16.65■□□□□ 0.26
CLN3-207ENST00000395653 MFAP2P55001 183 aa16.65■□□□□ 0.26
CLN3-207ENST00000395653 UBE2MP61081 183 aaKnown RBP16.65■□□□□ 0.26
CLN3-207ENST00000395653 ERHP84090 104 aaKnown RBP16.65■□□□□ 0.26
CLN3-207ENST00000395653 RPEL1Q2QD12 228 aa16.65■□□□□ 0.26
CLN3-207ENST00000395653 ACSM6Q6P461 480 aa16.65■□□□□ 0.26
CLN3-207ENST00000395653 VN1R17PQ8TDU5 208 aa16.65■□□□□ 0.26
CLN3-207ENST00000395653 ZMAT5Q9UDW3 170 aaKnown RBP16.65■□□□□ 0.26
CLN3-207ENST00000395653 CACNG5Q9UF02 275 aa16.65■□□□□ 0.26
CLN3-207ENST00000395653 PLA2G10O15496 165 aa16.64■□□□□ 0.25
CLN3-207ENST00000395653 OR52E5Q8NH55 327 aa16.64■□□□□ 0.25
CLN3-207ENST00000395653 DUXBA0A1W2PPF3 345 aa16.63■□□□□ 0.25
CLN3-207ENST00000395653 LYRM1O43325 122 aa16.63■□□□□ 0.25
CLN3-207ENST00000395653 SFT2D2O95562 160 aa16.63■□□□□ 0.25
CLN3-207ENST00000395653 KRTAP10-11P60412 298 aa16.63■□□□□ 0.25
CLN3-207ENST00000395653 PPP1R1AQ13522 171 aa16.63■□□□□ 0.25
CLN3-207ENST00000395653 TATDN3Q17R31 274 aa16.63■□□□□ 0.25
CLN3-207ENST00000395653 SPINK9Q5DT21 86 aa16.63■□□□□ 0.25
CLN3-207ENST00000395653 NMSQ5H8A3 153 aa16.63■□□□□ 0.25
CLN3-207ENST00000395653 LRTM2Q8N967 370 aa16.63■□□□□ 0.25
CLN3-207ENST00000395653 ZNF502Q8TBZ5 544 aa16.63■□□□□ 0.25
CLN3-207ENST00000395653 WDR12Q9GZL7 423 aaKnown RBP16.63■□□□□ 0.25
CLN3-207ENST00000395653 S4R3C0 116 aa16.63■□□□□ 0.25
CLN3-207ENST00000395653 DNAH3Q8TD57 4116 aa16.63■□□□□ 0.25
CLN3-207ENST00000395653 GGCTO75223 188 aaKnown RBP16.62■□□□□ 0.25
CLN3-207ENST00000395653 IGHV3-23P01764 117 aa16.62■□□□□ 0.25
CLN3-207ENST00000395653 SPCS3P61009 180 aa16.62■□□□□ 0.25
CLN3-207ENST00000395653 PDLIM3Q53GG5 364 aaPredicted RBP16.62■□□□□ 0.25
CLN3-207ENST00000395653 CLEC19AQ6UXS0 136 aa16.62■□□□□ 0.25
CLN3-207ENST00000395653 LYZL2Q7Z4W2 148 aa16.62■□□□□ 0.25
CLN3-207ENST00000395653 ELOVL1Q9BW60 279 aa16.62■□□□□ 0.25
CLN3-207ENST00000395653 AURKAIP1Q9NWT8 199 aaPredicted RBP16.62■□□□□ 0.25
CLN3-207ENST00000395653 CACFD1Q9UGQ2 172 aa16.62■□□□□ 0.25
CLN3-207ENST00000395653 PPP5D1E7EU14 171 aa16.62■□□□□ 0.25
CLN3-207ENST00000395653 SAP30O75446 220 aa16.62■□□□□ 0.25
CLN3-207ENST00000395653 PRB2P02812 416 aaPredicted RBP16.62■□□□□ 0.25
CLN3-207ENST00000395653 SULT1A3P0DMM9 295 aa16.62■□□□□ 0.25
CLN3-207ENST00000395653 SULT1A4P0DMN0 295 aa16.62■□□□□ 0.25
CLN3-207ENST00000395653 ARL3P36405 182 aa16.62■□□□□ 0.25
CLN3-207ENST00000395653 HOXA1P49639 335 aaPredicted RBP16.62■□□□□ 0.25
CLN3-207ENST00000395653 SYNJ2BPP57105 145 aa16.62■□□□□ 0.25
CLN3-207ENST00000395653 ZNF846Q147U1 533 aa16.62■□□□□ 0.25
CLN3-207ENST00000395653 OR9G4Q8NGQ1 327 aa16.62■□□□□ 0.25
CLN3-207ENST00000395653 ENY2Q9NPA8 101 aa16.62■□□□□ 0.25
CLN3-207ENST00000395653 SNCAP37840 140 aa16.61■□□□□ 0.25
CLN3-207ENST00000395653 ANKRD55Q3KP44 614 aa16.61■□□□□ 0.25
CLN3-207ENST00000395653 OR4C12Q96R67 309 aa16.61■□□□□ 0.25
CLN3-207ENST00000395653 ATP6V0BQ99437 205 aa16.61■□□□□ 0.25
CLN3-207ENST00000395653 FLVCR2Q9UPI3 526 aa16.61■□□□□ 0.25
CLN3-207ENST00000395653 K7EIM0 57 aa16.6■□□□□ 0.25
CLN3-207ENST00000395653 CLEC3BP05452 202 aa16.6■□□□□ 0.25
CLN3-207ENST00000395653 SCARB1Q8WTV0 552 aa16.6■□□□□ 0.25
CLN3-207ENST00000395653 C21orf62Q9NYP8 219 aa16.6■□□□□ 0.25
CLN3-207ENST00000395653 GPR183P32249 361 aa16.59■□□□□ 0.25
CLN3-207ENST00000395653 SMCO1Q147U7 214 aa16.59■□□□□ 0.25
CLN3-207ENST00000395653 A0A1B0GU03 582 aa16.58■□□□□ 0.24
CLN3-207ENST00000395653 C9orf170A2RU37 121 aa16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms