RNA–Protein interactions for RNA: ENST00000394272.7

HDDC3-202, Transcript of HD domain containing 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HDDC3, Length 1,880 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-202ENST00000394272 PIFOQ8TCI5 191 aa16.16■□□□□ 0.18
HDDC3-202ENST00000394272 SRSF12Q8WXF0 261 aaKnown RBP16.16■□□□□ 0.18
HDDC3-202ENST00000394272 TEX15Q9BXT5 2789 aa16.16■□□□□ 0.18
HDDC3-202ENST00000394272 NCBP2LA6PVI3 153 aaKnown RBP16.15■□□□□ 0.18
HDDC3-202ENST00000394272 TEX22C9J3V5 150 aa16.15■□□□□ 0.18
HDDC3-202ENST00000394272 SNCAP37840 140 aa16.15■□□□□ 0.18
HDDC3-202ENST00000394272 LRRC75BQ2VPJ9 315 aa16.15■□□□□ 0.18
HDDC3-202ENST00000394272 Q8N9W7 124 aa16.15■□□□□ 0.18
HDDC3-202ENST00000394272 GGACTQ9BVM4 153 aa16.15■□□□□ 0.18
HDDC3-202ENST00000394272 WDR61Q9GZS3 305 aaKnown RBP16.15■□□□□ 0.18
HDDC3-202ENST00000394272 UQCC1Q9NVA1 299 aa16.15■□□□□ 0.18
HDDC3-202ENST00000394272 C1RLQ9NZP8 487 aa16.15■□□□□ 0.18
HDDC3-202ENST00000394272 UBE2L5PA0A1B0GUS4 154 aa16.14■□□□□ 0.17
HDDC3-202ENST00000394272 FSHBP01225 129 aa16.14■□□□□ 0.17
HDDC3-202ENST00000394272 OR13C7P0DN81 318 aa16.14■□□□□ 0.17
HDDC3-202ENST00000394272 BPIFB3P59826 476 aa16.14■□□□□ 0.17
HDDC3-202ENST00000394272 RUNX1Q01196 453 aa16.14■□□□□ 0.17
HDDC3-202ENST00000394272 TUSC1Q2TAM9 212 aa16.14■□□□□ 0.17
HDDC3-202ENST00000394272 FAM96BQ9Y3D0 163 aa16.14■□□□□ 0.17
HDDC3-202ENST00000394272 FBP1P09467 338 aa16.14■□□□□ 0.17
HDDC3-202ENST00000394272 RNF141Q8WVD5 230 aa16.14■□□□□ 0.17
HDDC3-202ENST00000394272 FLNAP21333 2647 aaKnown RBP16.13■□□□□ 0.17
HDDC3-202ENST00000394272 FGF16O43320 207 aa16.13■□□□□ 0.17
HDDC3-202ENST00000394272 MDKP21741 143 aaPredicted RBP16.13■□□□□ 0.17
HDDC3-202ENST00000394272 SULT1A2P50226 295 aa16.13■□□□□ 0.17
HDDC3-202ENST00000394272 DLK1P80370 383 aa16.13■□□□□ 0.17
HDDC3-202ENST00000394272 SLC25A24Q6NUK1 477 aa16.13■□□□□ 0.17
HDDC3-202ENST00000394272 ZNF562Q6V9R5 426 aa16.13■□□□□ 0.17
HDDC3-202ENST00000394272 MRPL41Q8IXM3 137 aaKnown RBP16.13■□□□□ 0.17
HDDC3-202ENST00000394272 SLC7A5P1Q8MH63 180 aa16.13■□□□□ 0.17
HDDC3-202ENST00000394272 ZNF114Q8NC26 417 aa16.13■□□□□ 0.17
HDDC3-202ENST00000394272 GNPNAT1Q96EK6 184 aaPredicted RBP16.13■□□□□ 0.17
HDDC3-202ENST00000394272 SRSF8Q9BRL6 282 aaKnown RBP16.13■□□□□ 0.17
HDDC3-202ENST00000394272 RFNGQ9Y644 331 aa16.13■□□□□ 0.17
HDDC3-202ENST00000394272 AREGP15514 252 aa16.12■□□□□ 0.17
HDDC3-202ENST00000394272 LRRC20Q8TCA0 184 aa16.12■□□□□ 0.17
HDDC3-202ENST00000394272 SCGB1C1Q8TD33 95 aa16.12■□□□□ 0.17
HDDC3-202ENST00000394272 TAF15Q92804 592 aaKnown RBP eCLIP16.12■□□□□ 0.17
HDDC3-202ENST00000394272 P2RX4Q99571 388 aa16.12■□□□□ 0.17
HDDC3-202ENST00000394272 SSX3Q99909 188 aa16.12■□□□□ 0.17
HDDC3-202ENST00000394272 CNIH1O95406 144 aa16.12■□□□□ 0.17
HDDC3-202ENST00000394272 FXYD3Q14802 87 aa16.12■□□□□ 0.17
HDDC3-202ENST00000394272 PVRIGQ6DKI7 326 aa16.12■□□□□ 0.17
HDDC3-202ENST00000394272 HSD17B13Q7Z5P4 300 aaPredicted RBP16.12■□□□□ 0.17
HDDC3-202ENST00000394272 LINC00862A6NCI5 91 aa16.11■□□□□ 0.17
HDDC3-202ENST00000394272 REG1AP05451 166 aa16.11■□□□□ 0.17
HDDC3-202ENST00000394272 CX3CL1P78423 397 aa16.11■□□□□ 0.17
HDDC3-202ENST00000394272 SSMEM1Q8WWF3 244 aa16.11■□□□□ 0.17
HDDC3-202ENST00000394272 RSG1Q9BU20 258 aa16.11■□□□□ 0.17
HDDC3-202ENST00000394272 HLA-DRB1P01911 266 aa16.1■□□□□ 0.17
HDDC3-202ENST00000394272 SUB1P53999 127 aaKnown RBP eCLIP16.1■□□□□ 0.17
HDDC3-202ENST00000394272 AANATQ16613 207 aa16.1■□□□□ 0.17
HDDC3-202ENST00000394272 ARSJQ5FYB0 599 aaPredicted RBP16.1■□□□□ 0.17
HDDC3-202ENST00000394272 OR2G3Q8NGZ4 309 aa16.1■□□□□ 0.17
HDDC3-202ENST00000394272 NANPQ8TBE9 248 aa16.1■□□□□ 0.17
HDDC3-202ENST00000394272 FAM210AQ96ND0 272 aa16.1■□□□□ 0.17
HDDC3-202ENST00000394272 RBM14Q96PK6 669 aaKnown RBP16.1■□□□□ 0.17
HDDC3-202ENST00000394272 PSMG3Q9BT73 122 aaPredicted RBP16.1■□□□□ 0.17
HDDC3-202ENST00000394272 WDR83OSQ9Y284 106 aa16.1■□□□□ 0.17
HDDC3-202ENST00000394272 FNDC10F2Z333 226 aa16.1■□□□□ 0.17
HDDC3-202ENST00000394272 APELAP0DMC3 54 aa16.1■□□□□ 0.17
HDDC3-202ENST00000394272 NDPQ00604 133 aa16.1■□□□□ 0.17
HDDC3-202ENST00000394272 CXorf58Q96LI9 332 aa16.1■□□□□ 0.17
HDDC3-202ENST00000394272 IGHV7-81A0A0B4J1V7 117 aa16.09■□□□□ 0.17
HDDC3-202ENST00000394272 CENPVQ7Z7K6 275 aaPredicted RBP16.09■□□□□ 0.17
HDDC3-202ENST00000394272 BCL6BQ8N143 479 aaPredicted RBP16.09■□□□□ 0.17
HDDC3-202ENST00000394272 RNASEH2CQ8TDP1 164 aaKnown RBP16.09■□□□□ 0.17
HDDC3-202ENST00000394272 ARPC1AQ92747 370 aa16.09■□□□□ 0.17
HDDC3-202ENST00000394272 SLC25A33Q9BSK2 321 aa16.09■□□□□ 0.17
HDDC3-202ENST00000394272 TLN2Q9Y4G6 2542 aa16.08■□□□□ 0.17
HDDC3-202ENST00000394272 FGF7P21781 194 aa16.08■□□□□ 0.17
HDDC3-202ENST00000394272 MFAP2P55001 183 aa16.08■□□□□ 0.17
HDDC3-202ENST00000394272 CD69Q07108 199 aa16.08■□□□□ 0.17
HDDC3-202ENST00000394272 TREML4Q6UXN2 200 aa16.08■□□□□ 0.17
HDDC3-202ENST00000394272 TMEM182Q6ZP80 229 aaPredicted RBP16.08■□□□□ 0.17
HDDC3-202ENST00000394272 C9orf139Q6ZV77 190 aa16.08■□□□□ 0.17
HDDC3-202ENST00000394272 C5orf56Q8N8D9 126 aa16.08■□□□□ 0.17
HDDC3-202ENST00000394272 RASL11BQ9BPW5 248 aa16.08■□□□□ 0.17
HDDC3-202ENST00000394272 FAM103A1Q9BTL3 118 aaKnown RBP16.08■□□□□ 0.17
HDDC3-202ENST00000394272 TIMM9Q9Y5J7 89 aa16.08■□□□□ 0.17
HDDC3-202ENST00000394272 ZNF705EA8MWA4 302 aaPredicted RBP16.08■□□□□ 0.16
HDDC3-202ENST00000394272 H3BUX3 64 aa16.08■□□□□ 0.16
HDDC3-202ENST00000394272 SMAD7O15105 426 aaKnown RBP16.08■□□□□ 0.16
HDDC3-202ENST00000394272 RAB5CP51148 216 aa16.08■□□□□ 0.16
HDDC3-202ENST00000394272 TMEM219Q86XT9 240 aa16.08■□□□□ 0.16
HDDC3-202ENST00000394272 OR1P1Q8NH06 330 aa16.08■□□□□ 0.16
HDDC3-202ENST00000394272 SAT2Q96F10 170 aaPredicted RBP16.08■□□□□ 0.16
HDDC3-202ENST00000394272 NPCDR1Q9BY65 106 aa16.08■□□□□ 0.16
HDDC3-202ENST00000394272 NPVFQ9HCQ7 196 aa16.08■□□□□ 0.16
HDDC3-202ENST00000394272 MOB4Q9Y3A3 225 aa16.08■□□□□ 0.16
HDDC3-202ENST00000394272 LSM4Q9Y4Z0 139 aaKnown RBP16.08■□□□□ 0.16
HDDC3-202ENST00000394272 F11RQ9Y624 299 aaKnown RBP16.08■□□□□ 0.16
HDDC3-202ENST00000394272 MDFIC2A0A1B0GVS7 189 aa16.07■□□□□ 0.16
HDDC3-202ENST00000394272 SMCO3A2RU48 225 aa16.07■□□□□ 0.16
HDDC3-202ENST00000394272 A6NDX4 124 aa16.07■□□□□ 0.16
HDDC3-202ENST00000394272 UMAD1C9J7I0 102 aa16.07■□□□□ 0.16
HDDC3-202ENST00000394272 CTRB1P17538 263 aa16.07■□□□□ 0.16
HDDC3-202ENST00000394272 CTRB2Q6GPI1 263 aa16.07■□□□□ 0.16
HDDC3-202ENST00000394272 BTNL8Q6UX41 500 aa16.07■□□□□ 0.16
HDDC3-202ENST00000394272 C19orf35Q6ZS72 473 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms