RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 NDUFA5Q16718 116 aa21.29■■□□□ 1
MSX1-201ENST00000382723 IL17RELQ6ZVW7 336 aa21.29■■□□□ 1
MSX1-201ENST00000382723 PINX1Q96BK5 328 aaKnown RBP21.29■■□□□ 1
MSX1-201ENST00000382723 RBM14Q96PK6 669 aaKnown RBP21.29■■□□□ 1
MSX1-201ENST00000382723 FAM103A1Q9BTL3 118 aaKnown RBP21.29■■□□□ 1
MSX1-201ENST00000382723 ZFHX3Q15911 3703 aa21.29■■□□□ 1
MSX1-201ENST00000382723 KRTAP1-1Q07627 177 aa21.29■■□□□ 1
MSX1-201ENST00000382723 TUSC1Q2TAM9 212 aa21.29■■□□□ 1
MSX1-201ENST00000382723 ABHD5Q8WTS1 349 aa21.29■■□□□ 1
MSX1-201ENST00000382723 BSXQ3C1V8 233 aa21.28■■□□□ 1
MSX1-201ENST00000382723 SLC25A24Q6NUK1 477 aa21.28■■□□□ 1
MSX1-201ENST00000382723 ZNF562Q6V9R5 426 aa21.28■■□□□ 1
MSX1-201ENST00000382723 MRPL41Q8IXM3 137 aaKnown RBP21.28■■□□□ 1
MSX1-201ENST00000382723 TMED6Q8WW62 240 aa21.28■■□□□ 1
MSX1-201ENST00000382723 SH2D7A6NKC9 451 aaPredicted RBP21.27■■□□□ 1
MSX1-201ENST00000382723 FBXO24O75426 580 aa21.27■■□□□ 1
MSX1-201ENST00000382723 C2orf83Q53S99 150 aa21.27■■□□□ 1
MSX1-201ENST00000382723 FAM74A1Q5RGS3 127 aa21.27■■□□□ 1
MSX1-201ENST00000382723 MOB4Q9Y3A3 225 aa21.27■■□□□ 1
MSX1-201ENST00000382723 PLXNB1O43157 2135 aa21.27■■□□□ 1
MSX1-201ENST00000382723 CD5LO43866 347 aa21.27■■□□□ 1
MSX1-201ENST00000382723 IFNA5P01569 189 aa21.27■■□□□ 1
MSX1-201ENST00000382723 SPNS3Q6ZMD2 512 aa21.27■■□□□ 1
MSX1-201ENST00000382723 SCARB1Q8WTV0 552 aa21.27■■□□□ 1
MSX1-201ENST00000382723 ARPC1AQ92747 370 aa21.27■■□□□ 1
MSX1-201ENST00000382723 PHYHIPLQ96FC7 376 aa21.27■■□□□ 1
MSX1-201ENST00000382723 P2RX4Q99571 388 aa21.27■■□□□ 1
MSX1-201ENST00000382723 CSPG4Q6UVK1 2322 aa21.26■□□□□ 0.99
MSX1-201ENST00000382723 UBE2L5PA0A1B0GUS4 154 aa21.26■□□□□ 0.99
MSX1-201ENST00000382723 NDPQ00604 133 aa21.26■□□□□ 0.99
MSX1-201ENST00000382723 C19orf35Q6ZS72 473 aa21.26■□□□□ 0.99
MSX1-201ENST00000382723 C9orf139Q6ZV77 190 aa21.26■□□□□ 0.99
MSX1-201ENST00000382723 C5orf56Q8N8D9 126 aa21.26■□□□□ 0.99
MSX1-201ENST00000382723 PCNPQ8WW12 178 aaKnown RBP21.26■□□□□ 0.99
MSX1-201ENST00000382723 A6NDX4 124 aa21.25■□□□□ 0.99
MSX1-201ENST00000382723 PRSS46E5RG02 174 aa21.25■□□□□ 0.99
MSX1-201ENST00000382723 HLA-DRB1P01911 266 aa21.25■□□□□ 0.99
MSX1-201ENST00000382723 AANATQ16613 207 aa21.25■□□□□ 0.99
MSX1-201ENST00000382723 ATP6V1FQ16864 119 aa21.25■□□□□ 0.99
MSX1-201ENST00000382723 HSPB9Q9BQS6 159 aa21.25■□□□□ 0.99
MSX1-201ENST00000382723 GINS3Q9BRX5 216 aa21.25■□□□□ 0.99
MSX1-201ENST00000382723 TMEM147Q9BVK8 224 aa21.25■□□□□ 0.99
MSX1-201ENST00000382723 ARV1Q9H2C2 271 aa21.25■□□□□ 0.99
MSX1-201ENST00000382723 YAE1D1Q9NRH1 226 aa21.25■□□□□ 0.99
MSX1-201ENST00000382723 IGHV7-81A0A0B4J1V7 117 aa21.25■□□□□ 0.99
MSX1-201ENST00000382723 SCAF4O95104 1147 aaKnown RBP21.25■□□□□ 0.99
MSX1-201ENST00000382723 SH3BGRL3Q9H299 93 aa21.25■□□□□ 0.99
MSX1-201ENST00000382723 UQCC1Q9NVA1 299 aa21.25■□□□□ 0.99
MSX1-201ENST00000382723 NOTCH2Q04721 2471 aa21.24■□□□□ 0.99
MSX1-201ENST00000382723 IGHV4-59P01825 116 aa21.24■□□□□ 0.99
MSX1-201ENST00000382723 SUB1P53999 127 aaKnown RBP eCLIP21.24■□□□□ 0.99
MSX1-201ENST00000382723 ATP5IP56385 69 aaPredicted RBP21.24■□□□□ 0.99
MSX1-201ENST00000382723 RFNGQ9Y644 331 aa21.24■□□□□ 0.99
MSX1-201ENST00000382723 SMCO3A2RU48 225 aa21.23■□□□□ 0.99
MSX1-201ENST00000382723 RUNX1Q01196 453 aa21.23■□□□□ 0.99
MSX1-201ENST00000382723 SCGB1C1Q8TD33 95 aa21.23■□□□□ 0.99
MSX1-201ENST00000382723 SLC25A32Q9H2D1 315 aa21.23■□□□□ 0.99
MSX1-201ENST00000382723 TNFRSF19Q9NS68 423 aa21.23■□□□□ 0.99
MSX1-201ENST00000382723 PITPNC1Q9UKF7 332 aa21.23■□□□□ 0.99
MSX1-201ENST00000382723 FBXO7Q9Y3I1 522 aa21.23■□□□□ 0.99
MSX1-201ENST00000382723 ATP6V0CP27449 155 aa21.22■□□□□ 0.99
MSX1-201ENST00000382723 HSD17B13Q7Z5P4 300 aaPredicted RBP21.22■□□□□ 0.99
MSX1-201ENST00000382723 ZNF48Q96MX3 618 aaPredicted RBP21.22■□□□□ 0.99
MSX1-201ENST00000382723 SRSF8Q9BRL6 282 aaKnown RBP21.22■□□□□ 0.99
MSX1-201ENST00000382723 FGF16O43320 207 aa21.21■□□□□ 0.99
MSX1-201ENST00000382723 IER3P46695 156 aa21.21■□□□□ 0.99
MSX1-201ENST00000382723 EIF5AL1Q6IS14 154 aaKnown RBP21.21■□□□□ 0.99
MSX1-201ENST00000382723 PARP11Q9NR21 331 aa21.21■□□□□ 0.99
MSX1-201ENST00000382723 AMY1AP04745 511 aa21.21■□□□□ 0.99
MSX1-201ENST00000382723 DLK1P80370 383 aa21.21■□□□□ 0.99
MSX1-201ENST00000382723 TEX29Q8N6K0 151 aa21.21■□□□□ 0.99
MSX1-201ENST00000382723 WDR61Q9GZS3 305 aaKnown RBP21.21■□□□□ 0.99
MSX1-201ENST00000382723 SRP14P37108 136 aaKnown RBP21.2■□□□□ 0.98
MSX1-201ENST00000382723 MFAP2P55001 183 aa21.2■□□□□ 0.98
MSX1-201ENST00000382723 MLANAQ16655 118 aa21.2■□□□□ 0.98
MSX1-201ENST00000382723 VWC2Q2TAL6 325 aa21.2■□□□□ 0.98
MSX1-201ENST00000382723 ZNF114Q8NC26 417 aa21.2■□□□□ 0.98
MSX1-201ENST00000382723 GGACTQ9BVM4 153 aa21.2■□□□□ 0.98
MSX1-201ENST00000382723 MYO9AB2RTY4 2548 aa21.2■□□□□ 0.98
MSX1-201ENST00000382723 SPP1P10451 314 aa21.19■□□□□ 0.98
MSX1-201ENST00000382723 ARSJQ5FYB0 599 aaPredicted RBP21.19■□□□□ 0.98
MSX1-201ENST00000382723 LFNGQ8NES3 379 aa21.19■□□□□ 0.98
MSX1-201ENST00000382723 MISP3Q96FF7 219 aa21.19■□□□□ 0.98
MSX1-201ENST00000382723 RSG1Q9BU20 258 aa21.19■□□□□ 0.98
MSX1-201ENST00000382723 F11RQ9Y624 299 aaKnown RBP21.19■□□□□ 0.98
MSX1-201ENST00000382723 EGR2P11161 476 aaPredicted RBP21.19■□□□□ 0.98
MSX1-201ENST00000382723 FGF7P21781 194 aa21.19■□□□□ 0.98
MSX1-201ENST00000382723 C9orf152Q5JTZ5 239 aa21.19■□□□□ 0.98
MSX1-201ENST00000382723 ASPHD1Q5U4P2 390 aa21.19■□□□□ 0.98
MSX1-201ENST00000382723 Q6YL49 198 aa21.19■□□□□ 0.98
MSX1-201ENST00000382723 TAF15Q92804 592 aaKnown RBP eCLIP21.19■□□□□ 0.98
MSX1-201ENST00000382723 SMR3AQ99954 134 aa21.19■□□□□ 0.98
MSX1-201ENST00000382723 LINC01548A6NM66 108 aa21.18■□□□□ 0.98
MSX1-201ENST00000382723 SEC11BP0C7V7 166 aa21.18■□□□□ 0.98
MSX1-201ENST00000382723 DEFA4P12838 97 aa21.18■□□□□ 0.98
MSX1-201ENST00000382723 RAB14P61106 215 aa21.18■□□□□ 0.98
MSX1-201ENST00000382723 OR1P1Q8NH06 330 aa21.18■□□□□ 0.98
MSX1-201ENST00000382723 GNPNAT1Q96EK6 184 aaPredicted RBP21.18■□□□□ 0.98
MSX1-201ENST00000382723 WNT10AQ9GZT5 417 aa21.18■□□□□ 0.98
MSX1-201ENST00000382723 PLA2G2EQ9NZK7 142 aa21.18■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms