RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 TRGC1P0CF51 173 aa0.73□□□□□ -2.29
VPS13A-206ENST00000376646 GPX2P18283 190 aa0.73□□□□□ -2.29
VPS13A-206ENST00000376646 HIST1H1TP22492 207 aaPredicted RBP0.73□□□□□ -2.29
VPS13A-206ENST00000376646 CDKN2CP42773 168 aa0.73□□□□□ -2.29
VPS13A-206ENST00000376646 OMPP47874 163 aa0.73□□□□□ -2.29
VPS13A-206ENST00000376646 SNRPD2P62316 118 aaKnown RBP0.73□□□□□ -2.29
VPS13A-206ENST00000376646 SUPT4H1P63272 117 aaKnown RBP0.73□□□□□ -2.29
VPS13A-206ENST00000376646 KCNJ8Q15842 424 aa0.73□□□□□ -2.29
VPS13A-206ENST00000376646 ACOT6Q3I5F7 207 aaPredicted RBP0.73□□□□□ -2.29
VPS13A-206ENST00000376646 AADACL3Q5VUY0 350 aa0.73□□□□□ -2.29
VPS13A-206ENST00000376646 C7orf65Q6ZTY9 151 aa0.73□□□□□ -2.29
VPS13A-206ENST00000376646 TMEM86AQ8N2M4 240 aa0.73□□□□□ -2.29
VPS13A-206ENST00000376646 CLDN22Q8N7P3 220 aa0.73□□□□□ -2.29
VPS13A-206ENST00000376646 ZNF565Q8N9K5 539 aa0.73□□□□□ -2.29
VPS13A-206ENST00000376646 ZNF563Q8TA94 476 aa0.73□□□□□ -2.29
VPS13A-206ENST00000376646 OR52E6Q96RD3 313 aa0.73□□□□□ -2.29
VPS13A-206ENST00000376646 MTUS2Q5JR59 1369 aa0.73□□□□□ -2.29
VPS13A-206ENST00000376646 KIF24Q5T7B8 1368 aa0.73□□□□□ -2.29
VPS13A-206ENST00000376646 CR1P17927 2039 aa0.73□□□□□ -2.29
VPS13A-206ENST00000376646 JMJD1CQ15652 2540 aa0.73□□□□□ -2.29
VPS13A-206ENST00000376646 HECW1Q76N89 1606 aa0.73□□□□□ -2.29
VPS13A-206ENST00000376646 COL4A1P02462 1669 aa0.73□□□□□ -2.29
VPS13A-206ENST00000376646 IRGMA1A4Y4 181 aa0.73□□□□□ -2.29
VPS13A-206ENST00000376646 OR51F1A6NGY5 319 aa0.73□□□□□ -2.29
VPS13A-206ENST00000376646 FABP5P3A8MUU1 101 aa0.73□□□□□ -2.29
VPS13A-206ENST00000376646 GOLGA6L19H0YKK7 550 aa0.73□□□□□ -2.29
VPS13A-206ENST00000376646 TCRBP04435 133 aa0.73□□□□□ -2.29
VPS13A-206ENST00000376646 RPS4Y1P22090 263 aaKnown RBP0.73□□□□□ -2.29
VPS13A-206ENST00000376646 HIST1H2BOP23527 126 aa0.73□□□□□ -2.29
VPS13A-206ENST00000376646 HIST1H2BBP33778 126 aa0.73□□□□□ -2.29
VPS13A-206ENST00000376646 MAGEA12P43365 314 aa0.73□□□□□ -2.29
VPS13A-206ENST00000376646 HIST1H2BDP58876 126 aa0.73□□□□□ -2.29
VPS13A-206ENST00000376646 RPS20P60866 119 aaKnown RBP0.73□□□□□ -2.29
VPS13A-206ENST00000376646 PSME3P61289 254 aa0.73□□□□□ -2.29
VPS13A-206ENST00000376646 HIST1H2BCP62807 126 aa0.73□□□□□ -2.29
VPS13A-206ENST00000376646 HBA1P69905 142 aa0.73□□□□□ -2.29
VPS13A-206ENST00000376646 CCL20P78556 96 aa0.73□□□□□ -2.29
VPS13A-206ENST00000376646 AESQ08117 197 aa0.73□□□□□ -2.29
VPS13A-206ENST00000376646 KISS1Q15726 138 aa0.73□□□□□ -2.29
VPS13A-206ENST00000376646 HIST2H2BEQ16778 126 aa0.73□□□□□ -2.29
VPS13A-206ENST00000376646 RGS21Q2M5E4 152 aa0.73□□□□□ -2.29
VPS13A-206ENST00000376646 HIST2H2BFQ5QNW6 126 aaPredicted RBP0.73□□□□□ -2.29
VPS13A-206ENST00000376646 FAM173BQ6P4H8 233 aa0.73□□□□□ -2.29
VPS13A-206ENST00000376646 C20orf196Q8IYI0 205 aa0.73□□□□□ -2.29
VPS13A-206ENST00000376646 C10orf126Q8N4M7 172 aa0.73□□□□□ -2.29
VPS13A-206ENST00000376646 ANKRD29Q8N6D5 301 aa0.73□□□□□ -2.29
VPS13A-206ENST00000376646 HIST1H2BHQ93079 126 aa0.73□□□□□ -2.29
VPS13A-206ENST00000376646 DCUN1D1Q96GG9 259 aa0.73□□□□□ -2.29
VPS13A-206ENST00000376646 C8orf76Q96K31 380 aa0.73□□□□□ -2.29
VPS13A-206ENST00000376646 HIST1H2BNQ99877 126 aa0.73□□□□□ -2.29
VPS13A-206ENST00000376646 HIST1H2BMQ99879 126 aa0.73□□□□□ -2.29
VPS13A-206ENST00000376646 DERL1Q9BUN8 251 aa0.73□□□□□ -2.29
VPS13A-206ENST00000376646 MRPL32Q9BYC8 188 aaKnown RBP0.73□□□□□ -2.29
VPS13A-206ENST00000376646 C11orf68Q9H3H3 251 aaKnown RBP0.73□□□□□ -2.29
VPS13A-206ENST00000376646 MRPL27Q9P0M9 148 aaKnown RBP0.73□□□□□ -2.29
VPS13A-206ENST00000376646 TP73-AS1Q9UF72 201 aa0.73□□□□□ -2.29
VPS13A-206ENST00000376646 NAV2Q8IVL1 2488 aa0.73□□□□□ -2.29
VPS13A-206ENST00000376646 DOCK5Q9H7D0 1870 aa0.72□□□□□ -2.29
VPS13A-206ENST00000376646 TRBV10-2A0A0K0K1G8 114 aa0.72□□□□□ -2.29
VPS13A-206ENST00000376646 IGKV1-5P01602 117 aa0.72□□□□□ -2.29
VPS13A-206ENST00000376646 CRPP02741 224 aa0.72□□□□□ -2.29
VPS13A-206ENST00000376646 LSM6P62312 80 aaKnown RBP0.72□□□□□ -2.29
VPS13A-206ENST00000376646 RANP62826 216 aaKnown RBP0.72□□□□□ -2.29
VPS13A-206ENST00000376646 MOGQ16653 247 aa0.72□□□□□ -2.29
VPS13A-206ENST00000376646 ARHGAP11BQ3KRB8 267 aa0.72□□□□□ -2.29
VPS13A-206ENST00000376646 KRTAP21-3Q3LHN1 58 aa0.72□□□□□ -2.29
VPS13A-206ENST00000376646 SPOPLQ6IQ16 392 aa0.72□□□□□ -2.29
VPS13A-206ENST00000376646 KRTAP5-10Q6L8G5 202 aa0.72□□□□□ -2.29
VPS13A-206ENST00000376646 LRRC25Q8N386 305 aaPredicted RBP0.72□□□□□ -2.29
VPS13A-206ENST00000376646 Q96M85 177 aa0.72□□□□□ -2.29
VPS13A-206ENST00000376646 TMEM147Q9BVK8 224 aa0.72□□□□□ -2.29
VPS13A-206ENST00000376646 ULBP3Q9BZM4 244 aa0.72□□□□□ -2.29
VPS13A-206ENST00000376646 COMMD5Q9GZQ3 224 aa0.72□□□□□ -2.29
VPS13A-206ENST00000376646 OR51V1Q9H2C8 321 aa0.72□□□□□ -2.29
VPS13A-206ENST00000376646 UCK1Q9HA47 277 aa0.72□□□□□ -2.29
VPS13A-206ENST00000376646 PRTFDC1Q9NRG1 225 aa0.72□□□□□ -2.29
VPS13A-206ENST00000376646 CTNNBIP1Q9NSA3 81 aaPredicted RBP0.72□□□□□ -2.29
VPS13A-206ENST00000376646 FBXL12Q9NXK8 326 aa0.72□□□□□ -2.29
VPS13A-206ENST00000376646 MYH11P35749 1972 aa0.72□□□□□ -2.29
VPS13A-206ENST00000376646 MYO18BQ8IUG5 2567 aa0.72□□□□□ -2.29
VPS13A-206ENST00000376646 FAM236DA0A1B0GTK5 79 aa0.72□□□□□ -2.29
VPS13A-206ENST00000376646 PQLC2LA1A4F0 135 aa0.72□□□□□ -2.29
VPS13A-206ENST00000376646 OR4C46A6NHA9 309 aa0.72□□□□□ -2.29
VPS13A-206ENST00000376646 KPNA3O00505 521 aaPredicted RBP0.72□□□□□ -2.29
VPS13A-206ENST00000376646 PRB1P04280 392 aa0.72□□□□□ -2.29
VPS13A-206ENST00000376646 ZNF705BP0CI00 300 aaPredicted RBP0.72□□□□□ -2.29
VPS13A-206ENST00000376646 FAM236CP0DP71 79 aa0.72□□□□□ -2.29
VPS13A-206ENST00000376646 IBA57Q5T440 356 aaKnown RBP0.72□□□□□ -2.29
VPS13A-206ENST00000376646 LPCAT3Q6P1A2 487 aa0.72□□□□□ -2.29
VPS13A-206ENST00000376646 FP248Q71RG6 208 aaPredicted RBP0.72□□□□□ -2.29
VPS13A-206ENST00000376646 BPIFA4PQ86YQ2 179 aa0.72□□□□□ -2.29
VPS13A-206ENST00000376646 MCFD2Q8NI22 146 aa0.72□□□□□ -2.29
VPS13A-206ENST00000376646 ZFYVE9O95405 1425 aa0.72□□□□□ -2.29
VPS13A-206ENST00000376646 MUC2Q02817 5179 aa0.72□□□□□ -2.29
VPS13A-206ENST00000376646 CCDC88CQ9P219 2028 aa0.72□□□□□ -2.29
VPS13A-206ENST00000376646 CACNA1BQ00975 2339 aa0.71□□□□□ -2.3
VPS13A-206ENST00000376646 KIF13BQ9NQT8 1826 aa0.71□□□□□ -2.3
VPS13A-206ENST00000376646 GLI3P10071 1580 aa0.71□□□□□ -2.3
VPS13A-206ENST00000376646 TRBV6-5A0A0K0K1A5 114 aa0.71□□□□□ -2.3
VPS13A-206ENST00000376646 EXOC1LA0A1B0GW35 172 aa0.71□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms