RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 MGLLQ99685 303 aa10.08□□□□□ -0.8
VPS29-201ENST00000360579 RNF126Q9BV68 326 aa10.08□□□□□ -0.8
VPS29-201ENST00000360579 PLEKHA2Q9HB19 425 aa10.08□□□□□ -0.8
VPS29-201ENST00000360579 CCL28Q9NRJ3 127 aa10.08□□□□□ -0.8
VPS29-201ENST00000360579 IGKV3-7A0A075B6H7 116 aa10.07□□□□□ -0.8
VPS29-201ENST00000360579 TRAV14DV4A0A0A6YYC5 116 aa10.07□□□□□ -0.8
VPS29-201ENST00000360579 IGHV3-21A0A0B4J1V1 117 aa10.07□□□□□ -0.8
VPS29-201ENST00000360579 TEX50A0A1B0GTY4 177 aa10.07□□□□□ -0.8
VPS29-201ENST00000360579 F8W735 103 aaPredicted RBP10.07□□□□□ -0.8
VPS29-201ENST00000360579 SULT1C2O00338 296 aa10.07□□□□□ -0.8
VPS29-201ENST00000360579 RGS10O43665 173 aa10.07□□□□□ -0.8
VPS29-201ENST00000360579 YIF1AO95070 293 aa10.07□□□□□ -0.8
VPS29-201ENST00000360579 CTSGP08311 255 aa10.07□□□□□ -0.8
VPS29-201ENST00000360579 P0DMU3 169 aa10.07□□□□□ -0.8
VPS29-201ENST00000360579 FAM231AP0DMU4 169 aa10.07□□□□□ -0.8
VPS29-201ENST00000360579 FAM231CP0DMU5 169 aa10.07□□□□□ -0.8
VPS29-201ENST00000360579 MIFP14174 115 aa10.07□□□□□ -0.8
VPS29-201ENST00000360579 RAB3BP20337 219 aa10.07□□□□□ -0.8
VPS29-201ENST00000360579 ERVK-16P61578 105 aa10.07□□□□□ -0.8
VPS29-201ENST00000360579 FAM90A2PQ658T7 463 aa10.07□□□□□ -0.8
VPS29-201ENST00000360579 OR13F1Q8NGS4 319 aa10.07□□□□□ -0.8
VPS29-201ENST00000360579 DGCR14Q96DF8 476 aaKnown RBP10.07□□□□□ -0.8
VPS29-201ENST00000360579 COMMD9Q9P000 198 aa10.07□□□□□ -0.8
VPS29-201ENST00000360579 TMEM235A6NFC5 223 aa10.06□□□□□ -0.8
VPS29-201ENST00000360579 K7EIM0 57 aa10.06□□□□□ -0.8
VPS29-201ENST00000360579 EIF4EP06730 217 aaKnown RBP10.06□□□□□ -0.8
VPS29-201ENST00000360579 FCGR2CP31995 323 aa10.06□□□□□ -0.8
VPS29-201ENST00000360579 OGFRL1Q5TC84 451 aaPredicted RBP10.06□□□□□ -0.8
VPS29-201ENST00000360579 ZNF773Q6PK81 442 aa10.06□□□□□ -0.8
VPS29-201ENST00000360579 Q6ZTC4 211 aa10.06□□□□□ -0.8
VPS29-201ENST00000360579 STHQ8IWL8 128 aa10.06□□□□□ -0.8
VPS29-201ENST00000360579 GBGT1Q8N5D6 347 aa10.06□□□□□ -0.8
VPS29-201ENST00000360579 POM121L12Q8N7R1 296 aa10.06□□□□□ -0.8
VPS29-201ENST00000360579 GINS3Q9BRX5 216 aa10.06□□□□□ -0.8
VPS29-201ENST00000360579 HINT2Q9BX68 163 aa10.06□□□□□ -0.8
VPS29-201ENST00000360579 DUSP21Q9H596 190 aa10.06□□□□□ -0.8
VPS29-201ENST00000360579 NDUFA4L2Q9NRX3 87 aa10.06□□□□□ -0.8
VPS29-201ENST00000360579 MUC4Q99102 2169 aa10.05□□□□□ -0.8
VPS29-201ENST00000360579 TRAV2A0A0B4J234 112 aa10.05□□□□□ -0.8
VPS29-201ENST00000360579 IGHV4-28A0A0C4DH34 117 aa10.05□□□□□ -0.8
VPS29-201ENST00000360579 DNASE2O00115 360 aaPredicted RBP10.05□□□□□ -0.8
VPS29-201ENST00000360579 PPYP01298 95 aa10.05□□□□□ -0.8
VPS29-201ENST00000360579 AMBPP02760 352 aa10.05□□□□□ -0.8
VPS29-201ENST00000360579 TCF24Q7RTU0 167 aa10.05□□□□□ -0.8
VPS29-201ENST00000360579 BORCS5Q969J3 196 aa10.05□□□□□ -0.8
VPS29-201ENST00000360579 TMEM56Q96MV1 263 aa10.05□□□□□ -0.8
VPS29-201ENST00000360579 TXN2Q99757 166 aa10.05□□□□□ -0.8
VPS29-201ENST00000360579 SLC5A7Q9GZV3 580 aa10.05□□□□□ -0.8
VPS29-201ENST00000360579 IGHV3-49A0A0A0MS15 119 aa10.04□□□□□ -0.8
VPS29-201ENST00000360579 MARCH11A6NNE9 402 aa10.04□□□□□ -0.8
VPS29-201ENST00000360579 RTL8CO15255 209 aa10.04□□□□□ -0.8
VPS29-201ENST00000360579 SSX5O60225 188 aa10.04□□□□□ -0.8
VPS29-201ENST00000360579 RBMY1A1P0DJD3 496 aaKnown RBP10.04□□□□□ -0.8
VPS29-201ENST00000360579 RBMY1CP0DJD4 496 aa10.04□□□□□ -0.8
VPS29-201ENST00000360579 MFAP4P55083 255 aa10.04□□□□□ -0.8
VPS29-201ENST00000360579 DEFB131AP59861 70 aa10.04□□□□□ -0.8
VPS29-201ENST00000360579 RBMY1FQ15415 496 aaKnown RBP10.04□□□□□ -0.8
VPS29-201ENST00000360579 AADACL3Q5VUY0 350 aa10.04□□□□□ -0.8
VPS29-201ENST00000360579 LEMD1Q68G75 181 aa10.04□□□□□ -0.8
VPS29-201ENST00000360579 MORN3Q6PF18 240 aaPredicted RBP10.04□□□□□ -0.8
VPS29-201ENST00000360579 PRSS48Q7RTY5 328 aa10.04□□□□□ -0.8
VPS29-201ENST00000360579 CADM3Q8N126 398 aa10.04□□□□□ -0.8
VPS29-201ENST00000360579 BEST4Q8NFU0 473 aa10.04□□□□□ -0.8
VPS29-201ENST00000360579 OR1P1Q8NH06 330 aa10.04□□□□□ -0.8
VPS29-201ENST00000360579 OR51H1Q8NH63 302 aa10.04□□□□□ -0.8
VPS29-201ENST00000360579 GIMAP1Q8WWP7 306 aa10.04□□□□□ -0.8
VPS29-201ENST00000360579 MS4A6AQ9H2W1 248 aa10.04□□□□□ -0.8
VPS29-201ENST00000360579 OR51B2Q9Y5P1 312 aa10.04□□□□□ -0.8
VPS29-201ENST00000360579 HSPG2P98160 4391 aa10.04□□□□□ -0.8
VPS29-201ENST00000360579 ZNF705EA8MWA4 302 aaPredicted RBP10.03□□□□□ -0.8
VPS29-201ENST00000360579 SNAPC5O75971 98 aa10.03□□□□□ -0.8
VPS29-201ENST00000360579 SPP1P10451 314 aa10.03□□□□□ -0.8
VPS29-201ENST00000360579 LGALS9BQ3B8N2 356 aa10.03□□□□□ -0.8
VPS29-201ENST00000360579 DUSP18Q8NEJ0 188 aa10.03□□□□□ -0.8
VPS29-201ENST00000360579 NDUFAF3Q9BU61 184 aa10.03□□□□□ -0.8
VPS29-201ENST00000360579 NXF2Q9GZY0 626 aaKnown RBP10.03□□□□□ -0.8
VPS29-201ENST00000360579 FKBP11Q9NYL4 201 aa10.03□□□□□ -0.8
VPS29-201ENST00000360579 PRNDQ9UKY0 176 aa10.03□□□□□ -0.8
VPS29-201ENST00000360579 IGHV3OR16-13A0A075B7E8 117 aa10.02□□□□□ -0.81
VPS29-201ENST00000360579 DEFB131BA0A096LNP1 70 aa10.02□□□□□ -0.81
VPS29-201ENST00000360579 IGHV3-74A0A0B4J1X5 117 aa10.02□□□□□ -0.81
VPS29-201ENST00000360579 TRDV1A0A1B0GX56 115 aa10.02□□□□□ -0.81
VPS29-201ENST00000360579 ST8SIA3O43173 380 aa10.02□□□□□ -0.81
VPS29-201ENST00000360579 FXYD4P59646 89 aa10.02□□□□□ -0.81
VPS29-201ENST00000360579 RPL11P62913 178 aaKnown RBP10.02□□□□□ -0.81
VPS29-201ENST00000360579 ZNF818PQ6ZRF7 136 aa10.02□□□□□ -0.81
VPS29-201ENST00000360579 SLC25A46Q96AG3 418 aa10.02□□□□□ -0.81
VPS29-201ENST00000360579 ZNF414Q96IQ9 312 aa10.02□□□□□ -0.81
VPS29-201ENST00000360579 TMEM231Q9H6L2 316 aa10.02□□□□□ -0.81
VPS29-201ENST00000360579 VSIRQ9H7M9 311 aa10.02□□□□□ -0.81
VPS29-201ENST00000360579 NDUFB11Q9NX14 153 aa10.02□□□□□ -0.81
VPS29-201ENST00000360579 NOTOA8MTQ0 251 aa10.01□□□□□ -0.81
VPS29-201ENST00000360579 M0R2N4 97 aa10.01□□□□□ -0.81
VPS29-201ENST00000360579 GNG7O60262 68 aa10.01□□□□□ -0.81
VPS29-201ENST00000360579 F2RP25116 425 aa10.01□□□□□ -0.81
VPS29-201ENST00000360579 SOHLH1Q5JUK2 328 aa10.01□□□□□ -0.81
VPS29-201ENST00000360579 ZNF367Q7RTV3 350 aa10.01□□□□□ -0.81
VPS29-201ENST00000360579 TRPT1Q86TN4 253 aaKnown RBP10.01□□□□□ -0.81
VPS29-201ENST00000360579 TPRA1Q86W33 373 aa10.01□□□□□ -0.81
VPS29-201ENST00000360579 HOGA1Q86XE5 327 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms