RNA–Protein interactions for RNA: ENST00000359759.8

COL18A1-203, Transcript of collagen type XVIII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL18A1, Length 6,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-203ENST00000359759 PIKFYVEQ9Y2I7 2098 aa13.53□□□□□ -0.24
COL18A1-203ENST00000359759 MRPL20Q9BYC9 149 aaKnown RBP13.52□□□□□ -0.24
COL18A1-203ENST00000359759 IGHMP01871 453 aa13.52□□□□□ -0.24
COL18A1-203ENST00000359759 C1QTNF9P0C862 333 aa13.52□□□□□ -0.24
COL18A1-203ENST00000359759 VCX2Q9H322 139 aa13.52□□□□□ -0.24
COL18A1-203ENST00000359759 ARPC1AQ92747 370 aa13.52□□□□□ -0.25
COL18A1-203ENST00000359759 C12orf77C9JDV5 145 aa13.52□□□□□ -0.25
COL18A1-203ENST00000359759 LHX2P50458 406 aa13.52□□□□□ -0.25
COL18A1-203ENST00000359759 RPL23P62829 140 aaKnown RBP13.52□□□□□ -0.25
COL18A1-203ENST00000359759 C1QL4Q86Z23 238 aa13.52□□□□□ -0.25
COL18A1-203ENST00000359759 OR13A1Q8NGR1 328 aa13.51□□□□□ -0.25
COL18A1-203ENST00000359759 NXT2Q9NPJ8 142 aaKnown RBP13.51□□□□□ -0.25
COL18A1-203ENST00000359759 ST20Q9HBF5 79 aa13.51□□□□□ -0.25
COL18A1-203ENST00000359759 HS3ST3B1Q9Y662 390 aa13.51□□□□□ -0.25
COL18A1-203ENST00000359759 SIGMAR1Q99720 223 aa13.51□□□□□ -0.25
COL18A1-203ENST00000359759 NAA38Q9BRA0 125 aaKnown RBP13.51□□□□□ -0.25
COL18A1-203ENST00000359759 LINC01590Q5TEZ4 76 aa13.51□□□□□ -0.25
COL18A1-203ENST00000359759 FAM216BQ8N7L0 139 aa13.51□□□□□ -0.25
COL18A1-203ENST00000359759 CHTOPQ9Y3Y2 248 aaKnown RBP13.51□□□□□ -0.25
COL18A1-203ENST00000359759 TFF1P04155 84 aa13.51□□□□□ -0.25
COL18A1-203ENST00000359759 SLC25A45Q8N413 288 aa13.51□□□□□ -0.25
COL18A1-203ENST00000359759 SCN2AQ99250 2005 aa13.51□□□□□ -0.25
COL18A1-203ENST00000359759 LDLRAD2Q5SZI1 272 aa13.5□□□□□ -0.25
COL18A1-203ENST00000359759 PRDM13Q9H4Q3 707 aa13.5□□□□□ -0.25
COL18A1-203ENST00000359759 SRD5A1P18405 259 aa13.5□□□□□ -0.25
COL18A1-203ENST00000359759 RTN4RL2Q86UN3 420 aa13.5□□□□□ -0.25
COL18A1-203ENST00000359759 C21orf62Q9NYP8 219 aa13.5□□□□□ -0.25
COL18A1-203ENST00000359759 ARAP2Q8WZ64 1704 aa13.5□□□□□ -0.25
COL18A1-203ENST00000359759 FHL5Q5TD97 284 aa13.5□□□□□ -0.25
COL18A1-203ENST00000359759 C1orf122Q6ZSJ8 110 aa13.5□□□□□ -0.25
COL18A1-203ENST00000359759 PRR19A6NJB7 356 aa13.5□□□□□ -0.25
COL18A1-203ENST00000359759 KIR3DL3Q8N743 410 aa13.5□□□□□ -0.25
COL18A1-203ENST00000359759 CD55P08174 381 aa13.49□□□□□ -0.25
COL18A1-203ENST00000359759 SRSF6Q13247 344 aaKnown RBP13.49□□□□□ -0.25
COL18A1-203ENST00000359759 HBDP02042 147 aa13.49□□□□□ -0.25
COL18A1-203ENST00000359759 CELA3AP09093 270 aa13.49□□□□□ -0.25
COL18A1-203ENST00000359759 TRAV14DV4A0A0A6YYC5 116 aa13.49□□□□□ -0.25
COL18A1-203ENST00000359759 SHISA3A0PJX4 238 aa13.49□□□□□ -0.25
COL18A1-203ENST00000359759 IFI27P40305 119 aaPredicted RBP13.49□□□□□ -0.25
COL18A1-203ENST00000359759 HIST1H4AP62805 103 aaKnown RBP13.49□□□□□ -0.25
COL18A1-203ENST00000359759 RNF182Q8N6D2 247 aa13.49□□□□□ -0.25
COL18A1-203ENST00000359759 TRPM3Q9HCF6 1732 aaPredicted RBP13.49□□□□□ -0.25
COL18A1-203ENST00000359759 IGKV1D-43A0A0B4J1Z2 117 aa13.49□□□□□ -0.25
COL18A1-203ENST00000359759 DPM2O94777 84 aa13.48□□□□□ -0.25
COL18A1-203ENST00000359759 TDGF1P3P51864 188 aa13.48□□□□□ -0.25
COL18A1-203ENST00000359759 FAM27E3Q08E93 113 aa13.48□□□□□ -0.25
COL18A1-203ENST00000359759 SLC25A2Q9BXI2 301 aa13.48□□□□□ -0.25
COL18A1-203ENST00000359759 FOXH1O75593 365 aa13.48□□□□□ -0.25
COL18A1-203ENST00000359759 CD24P25063 80 aa13.48□□□□□ -0.25
COL18A1-203ENST00000359759 DEPPQ9NTK1 212 aa13.48□□□□□ -0.25
COL18A1-203ENST00000359759 ADAMTSL1Q8N6G6 1762 aa13.48□□□□□ -0.25
COL18A1-203ENST00000359759 LY75O60449 1722 aa13.48□□□□□ -0.25
COL18A1-203ENST00000359759 PRTN3P24158 256 aa13.48□□□□□ -0.25
COL18A1-203ENST00000359759 RFPL3SP0C7P2 107 aa13.48□□□□□ -0.25
COL18A1-203ENST00000359759 CD28P10747 220 aa13.48□□□□□ -0.25
COL18A1-203ENST00000359759 LRP5O75197 1615 aa13.48□□□□□ -0.25
COL18A1-203ENST00000359759 STHQ8IWL8 128 aa13.48□□□□□ -0.25
COL18A1-203ENST00000359759 FOXL1Q12952 345 aa13.48□□□□□ -0.25
COL18A1-203ENST00000359759 TIMM23BQ5SRD1 257 aa13.48□□□□□ -0.25
COL18A1-203ENST00000359759 A0A087WWC5 75 aa13.47□□□□□ -0.25
COL18A1-203ENST00000359759 PYYP10082 97 aa13.47□□□□□ -0.25
COL18A1-203ENST00000359759 UCNP55089 124 aa13.47□□□□□ -0.25
COL18A1-203ENST00000359759 CIARTQ8N365 385 aaPredicted RBP13.47□□□□□ -0.25
COL18A1-203ENST00000359759 ZNF525Q8N782 197 aa13.47□□□□□ -0.25
COL18A1-203ENST00000359759 TMEM170AQ8WVE7 144 aa13.47□□□□□ -0.25
COL18A1-203ENST00000359759 LSM4Q9Y4Z0 139 aaKnown RBP13.47□□□□□ -0.25
COL18A1-203ENST00000359759 MCM3APO60318 1980 aa13.47□□□□□ -0.25
COL18A1-203ENST00000359759 MYO7AQ13402 2215 aa13.47□□□□□ -0.25
COL18A1-203ENST00000359759 TIAF1O95411 115 aa13.47□□□□□ -0.25
COL18A1-203ENST00000359759 IGKCP01834 107 aa13.47□□□□□ -0.25
COL18A1-203ENST00000359759 COX5BP10606 129 aa13.47□□□□□ -0.25
COL18A1-203ENST00000359759 LAIR2Q6ISS4 152 aa13.47□□□□□ -0.25
COL18A1-203ENST00000359759 LURAP1LQ8IV03 231 aa13.47□□□□□ -0.25
COL18A1-203ENST00000359759 FAM181AQ8N9Y4 354 aa13.47□□□□□ -0.25
COL18A1-203ENST00000359759 PAX1P15863 534 aa13.47□□□□□ -0.25
COL18A1-203ENST00000359759 B9A039 149 aa13.47□□□□□ -0.25
COL18A1-203ENST00000359759 APOBEC3AP31941 199 aaPredicted RBP13.47□□□□□ -0.25
COL18A1-203ENST00000359759 DMRTC2Q8IXT2 367 aaPredicted RBP13.46□□□□□ -0.25
COL18A1-203ENST00000359759 SIGLEC12Q96PQ1 595 aa13.46□□□□□ -0.25
COL18A1-203ENST00000359759 PILRBQ9UKJ0 227 aa13.46□□□□□ -0.25
COL18A1-203ENST00000359759 RNF222A6NCQ9 220 aa13.46□□□□□ -0.25
COL18A1-203ENST00000359759 A8MXK9 166 aa13.46□□□□□ -0.25
COL18A1-203ENST00000359759 SRSF1Q07955 248 aaKnown RBP eCLIP13.46□□□□□ -0.252e-8■■■□□ 17.8
COL18A1-203ENST00000359759 SAMD5Q5TGI4 173 aa13.46□□□□□ -0.25
COL18A1-203ENST00000359759 ORAOV1Q8WV07 137 aa13.46□□□□□ -0.25
COL18A1-203ENST00000359759 OTORQ9NRC9 128 aa13.46□□□□□ -0.25
COL18A1-203ENST00000359759 GATD1Q8NB37 220 aa13.46□□□□□ -0.25
COL18A1-203ENST00000359759 GZMBP10144 247 aa13.46□□□□□ -0.26
COL18A1-203ENST00000359759 CD300EQ496F6 205 aaPredicted RBP13.46□□□□□ -0.26
COL18A1-203ENST00000359759 ZNF48Q96MX3 618 aaPredicted RBP13.46□□□□□ -0.26
COL18A1-203ENST00000359759 C5orf67F2Z3F1 127 aa13.45□□□□□ -0.26
COL18A1-203ENST00000359759 CELA3BP08861 270 aa13.45□□□□□ -0.26
COL18A1-203ENST00000359759 FXYD7P58549 80 aa13.45□□□□□ -0.26
COL18A1-203ENST00000359759 OSR1Q8TAX0 266 aaPredicted RBP13.45□□□□□ -0.26
COL18A1-203ENST00000359759 BSPH1Q075Z2 132 aa13.45□□□□□ -0.26
COL18A1-203ENST00000359759 PRDM6Q9NQX0 595 aa13.45□□□□□ -0.26
COL18A1-203ENST00000359759 NDUFS8O00217 210 aa13.45□□□□□ -0.26
COL18A1-203ENST00000359759 RAMP3O60896 148 aa13.45□□□□□ -0.26
COL18A1-203ENST00000359759 LINC00158P58513 81 aa13.45□□□□□ -0.26
COL18A1-203ENST00000359759 OR4X2Q8NGF9 303 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms