RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 FXYD3Q14802 87 aa14.85□□□□□ -0.03
CLN3-204ENST00000357857 UQCC1Q9NVA1 299 aa14.85□□□□□ -0.03
CLN3-204ENST00000357857 UBE2L5PA0A1B0GUS4 154 aa14.84□□□□□ -0.03
CLN3-204ENST00000357857 SUB1P53999 127 aaKnown RBP eCLIP14.84□□□□□ -0.03
CLN3-204ENST00000357857 TUSC1Q2TAM9 212 aa14.84□□□□□ -0.03
CLN3-204ENST00000357857 SCGB1C1Q8TD33 95 aa14.84□□□□□ -0.03
CLN3-204ENST00000357857 RASL11BQ9BPW5 248 aa14.84□□□□□ -0.03
CLN3-204ENST00000357857 SRSF8Q9BRL6 282 aaKnown RBP14.84□□□□□ -0.03
CLN3-204ENST00000357857 SEC11BP0C7V7 166 aa14.83□□□□□ -0.03
CLN3-204ENST00000357857 SPP1P10451 314 aa14.83□□□□□ -0.03
CLN3-204ENST00000357857 ATP6V0CP27449 155 aa14.83□□□□□ -0.03
CLN3-204ENST00000357857 DLK1P80370 383 aa14.83□□□□□ -0.03
CLN3-204ENST00000357857 AANATQ16613 207 aa14.83□□□□□ -0.03
CLN3-204ENST00000357857 VWC2Q2TAL6 325 aa14.83□□□□□ -0.03
CLN3-204ENST00000357857 ZNF562Q6V9R5 426 aa14.83□□□□□ -0.03
CLN3-204ENST00000357857 HSD17B13Q7Z5P4 300 aaPredicted RBP14.83□□□□□ -0.03
CLN3-204ENST00000357857 SSMEM1Q8WWF3 244 aa14.83□□□□□ -0.03
CLN3-204ENST00000357857 RBM14Q96PK6 669 aaKnown RBP14.83□□□□□ -0.03
CLN3-204ENST00000357857 SLC25A33Q9BSK2 321 aa14.83□□□□□ -0.03
CLN3-204ENST00000357857 GGACTQ9BVM4 153 aa14.83□□□□□ -0.03
CLN3-204ENST00000357857 PARD6GQ9BYG4 376 aaPredicted RBP14.83□□□□□ -0.03
CLN3-204ENST00000357857 SLC25A32Q9H2D1 315 aa14.83□□□□□ -0.03
CLN3-204ENST00000357857 CSMD1Q96PZ7 3565 aa14.83□□□□□ -0.03
CLN3-204ENST00000357857 ZANQ9Y493 2812 aa14.83□□□□□ -0.04
CLN3-204ENST00000357857 RPS10-NUDT3A0A1W2PQS6 291 aa14.83□□□□□ -0.04
CLN3-204ENST00000357857 H3BUX3 64 aa14.83□□□□□ -0.04
CLN3-204ENST00000357857 REG1AP05451 166 aa14.83□□□□□ -0.04
CLN3-204ENST00000357857 APELAP0DMC3 54 aa14.83□□□□□ -0.04
CLN3-204ENST00000357857 AREGP15514 252 aa14.83□□□□□ -0.04
CLN3-204ENST00000357857 CX3CL1P78423 397 aa14.83□□□□□ -0.04
CLN3-204ENST00000357857 CLLU1Q5K131 121 aa14.83□□□□□ -0.04
CLN3-204ENST00000357857 TMEM219Q86XT9 240 aa14.83□□□□□ -0.04
CLN3-204ENST00000357857 BCL6BQ8N143 479 aaPredicted RBP14.83□□□□□ -0.04
CLN3-204ENST00000357857 ABHD5Q8WTS1 349 aa14.83□□□□□ -0.04
CLN3-204ENST00000357857 PCNPQ8WW12 178 aaKnown RBP14.83□□□□□ -0.04
CLN3-204ENST00000357857 GNPNAT1Q96EK6 184 aaPredicted RBP14.83□□□□□ -0.04
CLN3-204ENST00000357857 P2RX4Q99571 388 aa14.83□□□□□ -0.04
CLN3-204ENST00000357857 WDR61Q9GZS3 305 aaKnown RBP14.83□□□□□ -0.04
CLN3-204ENST00000357857 SH3BGRL3Q9H299 93 aa14.83□□□□□ -0.04
CLN3-204ENST00000357857 HLA-DRB1P01911 266 aa14.82□□□□□ -0.04
CLN3-204ENST00000357857 DEFB112Q30KQ8 113 aa14.82□□□□□ -0.04
CLN3-204ENST00000357857 ZNF114Q8NC26 417 aa14.82□□□□□ -0.04
CLN3-204ENST00000357857 ARPC1AQ92747 370 aa14.82□□□□□ -0.04
CLN3-204ENST00000357857 MOB4Q9Y3A3 225 aa14.82□□□□□ -0.04
CLN3-204ENST00000357857 MDFIC2A0A1B0GVS7 189 aa14.81□□□□□ -0.04
CLN3-204ENST00000357857 RUNX1Q01196 453 aa14.81□□□□□ -0.04
CLN3-204ENST00000357857 C9orf139Q6ZV77 190 aa14.81□□□□□ -0.04
CLN3-204ENST00000357857 SMCO3A2RU48 225 aa14.8□□□□□ -0.04
CLN3-204ENST00000357857 A6NDX4 124 aa14.8□□□□□ -0.04
CLN3-204ENST00000357857 LY6EQ16553 131 aa14.8□□□□□ -0.04
CLN3-204ENST00000357857 C5orf56Q8N8D9 126 aa14.8□□□□□ -0.04
CLN3-204ENST00000357857 RNF141Q8WVD5 230 aa14.8□□□□□ -0.04
CLN3-204ENST00000357857 C22orf15Q8WYQ4 148 aa14.8□□□□□ -0.04
CLN3-204ENST00000357857 TAF15Q92804 592 aaKnown RBP eCLIP14.8□□□□□ -0.04
CLN3-204ENST00000357857 FAM103A1Q9BTL3 118 aaKnown RBP14.8□□□□□ -0.04
CLN3-204ENST00000357857 SVEP1Q4LDE5 3571 aa14.8□□□□□ -0.04
CLN3-204ENST00000357857 IGHV7-81A0A0B4J1V7 117 aa14.8□□□□□ -0.04
CLN3-204ENST00000357857 FGF16O43320 207 aa14.8□□□□□ -0.04
CLN3-204ENST00000357857 NMBP08949 121 aa14.8□□□□□ -0.04
CLN3-204ENST00000357857 FGF7P21781 194 aa14.8□□□□□ -0.04
CLN3-204ENST00000357857 NDPQ00604 133 aa14.8□□□□□ -0.04
CLN3-204ENST00000357857 NDUFA5Q16718 116 aa14.8□□□□□ -0.04
CLN3-204ENST00000357857 TEX29Q8N6K0 151 aa14.8□□□□□ -0.04
CLN3-204ENST00000357857 OR2G3Q8NGZ4 309 aa14.8□□□□□ -0.04
CLN3-204ENST00000357857 RNASEH2CQ8TDP1 164 aaKnown RBP14.8□□□□□ -0.04
CLN3-204ENST00000357857 PLA2G2EQ9NZK7 142 aa14.8□□□□□ -0.04
CLN3-204ENST00000357857 PITPNC1Q9UKF7 332 aa14.8□□□□□ -0.04
CLN3-204ENST00000357857 RFNGQ9Y644 331 aa14.8□□□□□ -0.04
CLN3-204ENST00000357857 CELSR1Q9NYQ6 3014 aa14.79□□□□□ -0.04
CLN3-204ENST00000357857 FLNAP21333 2647 aaKnown RBP14.79□□□□□ -0.04
CLN3-204ENST00000357857 FAM157CP0CG43 387 aa14.79□□□□□ -0.04
CLN3-204ENST00000357857 SULT1A2P50226 295 aa14.79□□□□□ -0.04
CLN3-204ENST00000357857 ARSJQ5FYB0 599 aaPredicted RBP14.79□□□□□ -0.04
CLN3-204ENST00000357857 LRRC20Q8TCA0 184 aa14.79□□□□□ -0.04
CLN3-204ENST00000357857 RSG1Q9BU20 258 aa14.79□□□□□ -0.04
CLN3-204ENST00000357857 F11RQ9Y624 299 aaKnown RBP14.79□□□□□ -0.04
CLN3-204ENST00000357857 TEX15Q9BXT5 2789 aa14.78□□□□□ -0.04
CLN3-204ENST00000357857 FNDC10F2Z333 226 aa14.78□□□□□ -0.04
CLN3-204ENST00000357857 CD5LO43866 347 aa14.78□□□□□ -0.04
CLN3-204ENST00000357857 MDKP21741 143 aaPredicted RBP14.78□□□□□ -0.04
CLN3-204ENST00000357857 KRTAP1-1Q07627 177 aa14.78□□□□□ -0.04
CLN3-204ENST00000357857 PVRIGQ6DKI7 326 aa14.78□□□□□ -0.04
CLN3-204ENST00000357857 OR1P1Q8NH06 330 aa14.78□□□□□ -0.04
CLN3-204ENST00000357857 HSPB9Q9BQS6 159 aa14.78□□□□□ -0.04
CLN3-204ENST00000357857 PSMG3Q9BT73 122 aaPredicted RBP14.78□□□□□ -0.04
CLN3-204ENST00000357857 WDR83OSQ9Y284 106 aa14.78□□□□□ -0.04
CLN3-204ENST00000357857 CD69Q07108 199 aa14.78□□□□□ -0.04
CLN3-204ENST00000357857 BTNL8Q6UX41 500 aa14.78□□□□□ -0.04
CLN3-204ENST00000357857 TMEM182Q6ZP80 229 aaPredicted RBP14.78□□□□□ -0.04
CLN3-204ENST00000357857 C19orf35Q6ZS72 473 aa14.78□□□□□ -0.04
CLN3-204ENST00000357857 NPVFQ9HCQ7 196 aa14.78□□□□□ -0.04
CLN3-204ENST00000357857 CTRB1P17538 263 aa14.77□□□□□ -0.05
CLN3-204ENST00000357857 GPX4P36969 197 aaPredicted RBP14.77□□□□□ -0.05
CLN3-204ENST00000357857 MFAP2P55001 183 aa14.77□□□□□ -0.05
CLN3-204ENST00000357857 CTRB2Q6GPI1 263 aa14.77□□□□□ -0.05
CLN3-204ENST00000357857 TREML4Q6UXN2 200 aa14.77□□□□□ -0.05
CLN3-204ENST00000357857 C16orf82Q7Z2V1 217 aa14.77□□□□□ -0.05
CLN3-204ENST00000357857 CACNG8Q8WXS5 425 aa14.77□□□□□ -0.05
CLN3-204ENST00000357857 FBXO7Q9Y3I1 522 aa14.77□□□□□ -0.05
CLN3-204ENST00000357857 TIMM9Q9Y5J7 89 aa14.77□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms