RNA–Protein interactions for RNA: ENST00000357806.11

CLN3-203, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,469 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-203ENST00000357806 CXorf58Q96LI9 332 aa13.04□□□□□ -0.32
CLN3-203ENST00000357806 AURKAIP1Q9NWT8 199 aaPredicted RBP13.04□□□□□ -0.32
CLN3-203ENST00000357806 F11RQ9Y624 299 aaKnown RBP13.04□□□□□ -0.32
CLN3-203ENST00000357806 IL7P13232 177 aa13.03□□□□□ -0.32
CLN3-203ENST00000357806 SELENOHQ8IZQ5 122 aaKnown RBP13.03□□□□□ -0.32
CLN3-203ENST00000357806 OR1L6Q8NGR2 347 aa13.03□□□□□ -0.32
CLN3-203ENST00000357806 IL22RA2Q969J5 263 aa13.03□□□□□ -0.32
CLN3-203ENST00000357806 PLEKHA3Q9HB20 300 aa13.03□□□□□ -0.32
CLN3-203ENST00000357806 TMEM56-RWDD3S4R434 201 aa13.03□□□□□ -0.32
CLN3-203ENST00000357806 A0A0B4J293 547 aa13.02□□□□□ -0.33
CLN3-203ENST00000357806 A0A0G2JRQ6 117 aa13.02□□□□□ -0.33
CLN3-203ENST00000357806 CENPXA8MT69 81 aa13.02□□□□□ -0.33
CLN3-203ENST00000357806 SAP30O75446 220 aa13.02□□□□□ -0.33
CLN3-203ENST00000357806 SUPT4H1P63272 117 aaKnown RBP13.02□□□□□ -0.33
CLN3-203ENST00000357806 TMEM187Q14656 261 aa13.02□□□□□ -0.33
CLN3-203ENST00000357806 TMEM128Q5BJH2 165 aa13.02□□□□□ -0.33
CLN3-203ENST00000357806 ACSM6Q6P461 480 aa13.02□□□□□ -0.33
CLN3-203ENST00000357806 SLC35G3Q8N808 338 aa13.02□□□□□ -0.33
CLN3-203ENST00000357806 C7orf50Q9BRJ6 194 aaKnown RBP13.02□□□□□ -0.33
CLN3-203ENST00000357806 DMRT1Q9Y5R6 373 aa13.02□□□□□ -0.33
CLN3-203ENST00000357806 TRBV7-1A0A0A6YYK4 115 aa13.01□□□□□ -0.33
CLN3-203ENST00000357806 PIGBOS1A0A0B4J2F0 54 aa13.01□□□□□ -0.33
CLN3-203ENST00000357806 MFSD2BA6NFX1 497 aa13.01□□□□□ -0.33
CLN3-203ENST00000357806 BMPR1BO00238 502 aa13.01□□□□□ -0.33
CLN3-203ENST00000357806 ST8SIA3O43173 380 aa13.01□□□□□ -0.33
CLN3-203ENST00000357806 IFNA17P01571 189 aa13.01□□□□□ -0.33
CLN3-203ENST00000357806 KRTAP10-11P60412 298 aa13.01□□□□□ -0.33
CLN3-203ENST00000357806 SRPXP78539 464 aa13.01□□□□□ -0.33
CLN3-203ENST00000357806 KLF5Q13887 457 aaPredicted RBP13.01□□□□□ -0.33
CLN3-203ENST00000357806 TATDN3Q17R31 274 aa13.01□□□□□ -0.33
CLN3-203ENST00000357806 SLC25A24Q6NUK1 477 aa13.01□□□□□ -0.33
CLN3-203ENST00000357806 CCDC140Q96MF4 163 aa13.01□□□□□ -0.33
CLN3-203ENST00000357806 ELOVL1Q9BW60 279 aa13.01□□□□□ -0.33
CLN3-203ENST00000357806 BATF3Q9NR55 127 aa13.01□□□□□ -0.33
CLN3-203ENST00000357806 IGHV3-23P01764 117 aa13□□□□□ -0.33
CLN3-203ENST00000357806 CCR6P51684 374 aa13□□□□□ -0.33
CLN3-203ENST00000357806 SYNJ2BPP57105 145 aa13□□□□□ -0.33
CLN3-203ENST00000357806 ERHP84090 104 aaKnown RBP13□□□□□ -0.33
CLN3-203ENST00000357806 CLEC19AQ6UXS0 136 aa13□□□□□ -0.33
CLN3-203ENST00000357806 CENPSQ8N2Z9 138 aa13□□□□□ -0.33
CLN3-203ENST00000357806 OR2C3Q8N628 320 aa13□□□□□ -0.33
CLN3-203ENST00000357806 ZNF114Q8NC26 417 aa13□□□□□ -0.33
CLN3-203ENST00000357806 OR1P1Q8NH06 330 aa13□□□□□ -0.33
CLN3-203ENST00000357806 PRR13Q9NZ81 148 aa13□□□□□ -0.33
CLN3-203ENST00000357806 PTTG2Q9NZH5 202 aa13□□□□□ -0.33
CLN3-203ENST00000357806 S4R3C0 116 aa13□□□□□ -0.33
CLN3-203ENST00000357806 LINC00854A0A1B0GVQ3 168 aa12.99□□□□□ -0.33
CLN3-203ENST00000357806 PPP5D1E7EU14 171 aa12.99□□□□□ -0.33
CLN3-203ENST00000357806 GGCTO75223 188 aaKnown RBP12.99□□□□□ -0.33
CLN3-203ENST00000357806 ARL3P36405 182 aa12.99□□□□□ -0.33
CLN3-203ENST00000357806 SPINK9Q5DT21 86 aa12.99□□□□□ -0.33
CLN3-203ENST00000357806 LGI3Q8N145 548 aa12.99□□□□□ -0.33
CLN3-203ENST00000357806 OR9G4Q8NGQ1 327 aa12.99□□□□□ -0.33
CLN3-203ENST00000357806 VN1R17PQ8TDU5 208 aa12.99□□□□□ -0.33
CLN3-203ENST00000357806 S100ZQ8WXG8 99 aa12.99□□□□□ -0.33
CLN3-203ENST00000357806 OR4C12Q96R67 309 aa12.99□□□□□ -0.33
CLN3-203ENST00000357806 CCDC32Q9BV29 185 aa12.99□□□□□ -0.33
CLN3-203ENST00000357806 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.99□□□□□ -0.33
CLN3-203ENST00000357806 CACNG5Q9UF02 275 aa12.99□□□□□ -0.33
CLN3-203ENST00000357806 A0A0B4J2A0 478 aa12.98□□□□□ -0.33
CLN3-203ENST00000357806 INS-IGF2F8WCM5 200 aa12.98□□□□□ -0.33
CLN3-203ENST00000357806 NDUFB6O95139 128 aa12.98□□□□□ -0.33
CLN3-203ENST00000357806 VAMP1P23763 118 aa12.98□□□□□ -0.33
CLN3-203ENST00000357806 HOXA1P49639 335 aaPredicted RBP12.98□□□□□ -0.33
CLN3-203ENST00000357806 MFAP2P55001 183 aa12.98□□□□□ -0.33
CLN3-203ENST00000357806 Q6ZRM9 215 aa12.98□□□□□ -0.33
CLN3-203ENST00000357806 MRAPQ8TCY5 172 aa12.98□□□□□ -0.33
CLN3-203ENST00000357806 ENY2Q9NPA8 101 aa12.98□□□□□ -0.33
CLN3-203ENST00000357806 PEMTQ9UBM1 199 aa12.98□□□□□ -0.33
CLN3-203ENST00000357806 SHPKQ9UHJ6 478 aa12.98□□□□□ -0.33
CLN3-203ENST00000357806 SORL1Q92673 2214 aa12.98□□□□□ -0.33
CLN3-203ENST00000357806 PRKDCP78527 4128 aaKnown RBP12.98□□□□□ -0.33
CLN3-203ENST00000357806 UBE2MP61081 183 aaKnown RBP12.97□□□□□ -0.33
CLN3-203ENST00000357806 AARDQ4LEZ3 155 aa12.97□□□□□ -0.33
CLN3-203ENST00000357806 OR52E5Q8NH55 327 aa12.97□□□□□ -0.33
CLN3-203ENST00000357806 ZNF502Q8TBZ5 544 aa12.97□□□□□ -0.33
CLN3-203ENST00000357806 GPR146Q96CH1 333 aa12.97□□□□□ -0.33
CLN3-203ENST00000357806 CACFD1Q9UGQ2 172 aa12.97□□□□□ -0.33
CLN3-203ENST00000357806 DUXBA0A1W2PPF3 345 aa12.97□□□□□ -0.33
CLN3-203ENST00000357806 SULT1A3P0DMM9 295 aa12.97□□□□□ -0.33
CLN3-203ENST00000357806 SULT1A4P0DMN0 295 aa12.97□□□□□ -0.33
CLN3-203ENST00000357806 GPR183P32249 361 aa12.97□□□□□ -0.33
CLN3-203ENST00000357806 BTCP35070 178 aa12.97□□□□□ -0.33
CLN3-203ENST00000357806 SNCAP37840 140 aa12.97□□□□□ -0.33
CLN3-203ENST00000357806 SPCS3P61009 180 aa12.97□□□□□ -0.33
CLN3-203ENST00000357806 SFT2D2O95562 160 aa12.96□□□□□ -0.34
CLN3-203ENST00000357806 HLA-AP01891 365 aaKnown RBP12.96□□□□□ -0.34
CLN3-203ENST00000357806 CLEC3BP05452 202 aa12.96□□□□□ -0.34
CLN3-203ENST00000357806 PPP1R1AQ13522 171 aa12.96□□□□□ -0.34
CLN3-203ENST00000357806 NMSQ5H8A3 153 aa12.96□□□□□ -0.34
CLN3-203ENST00000357806 LYZL2Q7Z4W2 148 aa12.96□□□□□ -0.34
CLN3-203ENST00000357806 SCARB1Q8WTV0 552 aa12.96□□□□□ -0.34
CLN3-203ENST00000357806 MISP3Q96FF7 219 aa12.96□□□□□ -0.34
CLN3-203ENST00000357806 ATP6V0BQ99437 205 aa12.96□□□□□ -0.34
CLN3-203ENST00000357806 C21orf62Q9NYP8 219 aa12.96□□□□□ -0.34
CLN3-203ENST00000357806 WI2-2373I1.2A0A1W2PRP0 233 aa12.95□□□□□ -0.34
CLN3-203ENST00000357806 K7EIM0 57 aa12.95□□□□□ -0.34
CLN3-203ENST00000357806 LYRM1O43325 122 aa12.95□□□□□ -0.34
CLN3-203ENST00000357806 OR2C1O95371 312 aa12.95□□□□□ -0.34
CLN3-203ENST00000357806 SUB1P53999 127 aaKnown RBP eCLIP12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms