RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 MBD6Q96DN6 1003 aa5.59□□□□□ -1.52
VPS39-202ENST00000348544 PLPPR2Q96GM1 343 aa5.59□□□□□ -1.52
VPS39-202ENST00000348544 HSD17B10Q99714 261 aaKnown RBP5.59□□□□□ -1.52
VPS39-202ENST00000348544 RTL8AQ9BWD3 113 aa5.59□□□□□ -1.52
VPS39-202ENST00000348544 WDR54Q9H977 334 aa5.59□□□□□ -1.52
VPS39-202ENST00000348544 ZNF331Q9NQX6 463 aaPredicted RBP5.59□□□□□ -1.52
VPS39-202ENST00000348544 U3KQA8 63 aa5.59□□□□□ -1.52
VPS39-202ENST00000348544 TRAV8-6A0A0B4J262 113 aa5.58□□□□□ -1.52
VPS39-202ENST00000348544 C21orf140B9A014 251 aa5.58□□□□□ -1.52
VPS39-202ENST00000348544 P04436 131 aa5.58□□□□□ -1.52
VPS39-202ENST00000348544 GDF1P27539 372 aa5.58□□□□□ -1.52
VPS39-202ENST00000348544 LTBRP36941 435 aa5.58□□□□□ -1.52
VPS39-202ENST00000348544 PPOXP50336 477 aa5.58□□□□□ -1.52
VPS39-202ENST00000348544 MFAP2P55001 183 aa5.58□□□□□ -1.52
VPS39-202ENST00000348544 SRYQ05066 204 aa5.58□□□□□ -1.52
VPS39-202ENST00000348544 ZNF766Q5HY98 468 aa5.58□□□□□ -1.52
VPS39-202ENST00000348544 SLC35E4Q6ICL7 350 aa5.58□□□□□ -1.52
VPS39-202ENST00000348544 OR13A1Q8NGR1 328 aa5.58□□□□□ -1.52
VPS39-202ENST00000348544 OR4A16Q8NH70 328 aa5.58□□□□□ -1.52
VPS39-202ENST00000348544 FAM216AQ8WUB2 273 aa5.58□□□□□ -1.52
VPS39-202ENST00000348544 NINJ1Q92982 152 aa5.58□□□□□ -1.52
VPS39-202ENST00000348544 LINC00479Q96M42 142 aa5.58□□□□□ -1.52
VPS39-202ENST00000348544 DCTN5Q9BTE1 182 aa5.58□□□□□ -1.52
VPS39-202ENST00000348544 FAM234AQ9H0X4 552 aa5.58□□□□□ -1.52
VPS39-202ENST00000348544 SLC25A10Q9UBX3 287 aaPredicted RBP5.58□□□□□ -1.52
VPS39-202ENST00000348544 ARL2-SNX15V9GYD0 113 aa5.58□□□□□ -1.52
VPS39-202ENST00000348544 CEP192Q8TEP8 1941 aa5.58□□□□□ -1.52
VPS39-202ENST00000348544 VWC2LB2RUY7 222 aa5.58□□□□□ -1.52
VPS39-202ENST00000348544 SAP30O75446 220 aa5.58□□□□□ -1.52
VPS39-202ENST00000348544 CYC1P08574 325 aa5.58□□□□□ -1.52
VPS39-202ENST00000348544 ARR3P36575 388 aa5.58□□□□□ -1.52
VPS39-202ENST00000348544 ZNF826PQ6ZT77 177 aa5.58□□□□□ -1.52
VPS39-202ENST00000348544 MOB3BQ86TA1 216 aa5.58□□□□□ -1.52
VPS39-202ENST00000348544 NUP35Q8NFH5 326 aa5.58□□□□□ -1.52
VPS39-202ENST00000348544 CORO2AQ92828 525 aa5.58□□□□□ -1.52
VPS39-202ENST00000348544 SARAFQ96BY9 339 aa5.58□□□□□ -1.52
VPS39-202ENST00000348544 TMEM70Q9BUB7 260 aa5.58□□□□□ -1.52
VPS39-202ENST00000348544 SAP30LQ9HAJ7 183 aa5.58□□□□□ -1.52
VPS39-202ENST00000348544 ST20Q9HBF5 79 aa5.58□□□□□ -1.52
VPS39-202ENST00000348544 ZNF355PQ9NSJ1 428 aa5.58□□□□□ -1.52
VPS39-202ENST00000348544 CLCF1Q9UBD9 225 aa5.58□□□□□ -1.52
VPS39-202ENST00000348544 TCF19Q9Y242 345 aa5.58□□□□□ -1.52
VPS39-202ENST00000348544 ZNF835Q9Y2P0 537 aa5.58□□□□□ -1.52
VPS39-202ENST00000348544 POLDIP2Q9Y2S7 368 aa5.58□□□□□ -1.52
VPS39-202ENST00000348544 GAGE12BA1L429 117 aa5.57□□□□□ -1.52
VPS39-202ENST00000348544 FAM90A9PA6NNJ1 464 aa5.57□□□□□ -1.52
VPS39-202ENST00000348544 CORTO00230 105 aa5.57□□□□□ -1.52
VPS39-202ENST00000348544 CRXO43186 299 aaPredicted RBP5.57□□□□□ -1.52
VPS39-202ENST00000348544 OR2J3O76001 311 aa5.57□□□□□ -1.52
VPS39-202ENST00000348544 GRPP07492 148 aa5.57□□□□□ -1.52
VPS39-202ENST00000348544 CELA3AP09093 270 aa5.57□□□□□ -1.52
VPS39-202ENST00000348544 RIPPLY3P57055 190 aa5.57□□□□□ -1.52
VPS39-202ENST00000348544 PLP2Q04941 152 aa5.57□□□□□ -1.52
VPS39-202ENST00000348544 Q0VFX4 171 aa5.57□□□□□ -1.52
VPS39-202ENST00000348544 LTC4SQ16873 150 aa5.57□□□□□ -1.52
VPS39-202ENST00000348544 PRR27Q6MZM9 219 aa5.57□□□□□ -1.52
VPS39-202ENST00000348544 CXorf67Q86X51 503 aaPredicted RBP5.57□□□□□ -1.52
VPS39-202ENST00000348544 OR2T6Q8NHC8 308 aa5.57□□□□□ -1.52
VPS39-202ENST00000348544 NUDT11Q96G61 164 aa5.57□□□□□ -1.52
VPS39-202ENST00000348544 NABP2Q9BQ15 211 aa5.57□□□□□ -1.52
VPS39-202ENST00000348544 GCM1Q9NP62 436 aa5.57□□□□□ -1.52
VPS39-202ENST00000348544 IGKV1OR2-108A0A075B7D4 117 aa5.57□□□□□ -1.52
VPS39-202ENST00000348544 MYOD1P15172 320 aa5.57□□□□□ -1.52
VPS39-202ENST00000348544 CD24P25063 80 aa5.57□□□□□ -1.52
VPS39-202ENST00000348544 RASL11AQ6T310 242 aa5.57□□□□□ -1.52
VPS39-202ENST00000348544 ZNF841Q6ZN19 808 aa5.57□□□□□ -1.52
VPS39-202ENST00000348544 OR2Y1Q8NGV0 311 aa5.57□□□□□ -1.52
VPS39-202ENST00000348544 COMMD5Q9GZQ3 224 aa5.57□□□□□ -1.52
VPS39-202ENST00000348544 MEGF9Q9H1U4 602 aa5.57□□□□□ -1.52
VPS39-202ENST00000348544 TMEM167BQ9NRX6 74 aa5.57□□□□□ -1.52
VPS39-202ENST00000348544 TMEM140Q9NV12 185 aa5.57□□□□□ -1.52
VPS39-202ENST00000348544 COL6A3P12111 3177 aa5.56□□□□□ -1.52
VPS39-202ENST00000348544 NBEAQ8NFP9 2946 aa5.56□□□□□ -1.52
VPS39-202ENST00000348544 A0A087X0K7 114 aa5.56□□□□□ -1.52
VPS39-202ENST00000348544 C15orf65H3BRN8 121 aa5.56□□□□□ -1.52
VPS39-202ENST00000348544 SYS1-DBNDD2H3BUS1 97 aa5.56□□□□□ -1.52
VPS39-202ENST00000348544 M0R1X1 148 aa5.56□□□□□ -1.52
VPS39-202ENST00000348544 OR7C2O60412 319 aa5.56□□□□□ -1.52
VPS39-202ENST00000348544 TMEM11P17152 192 aa5.56□□□□□ -1.52
VPS39-202ENST00000348544 RPL39P5Q59GN2 51 aa5.56□□□□□ -1.52
VPS39-202ENST00000348544 MORN5Q5VZ52 161 aa5.56□□□□□ -1.52
VPS39-202ENST00000348544 FAM71F2Q6NXP2 309 aa5.56□□□□□ -1.52
VPS39-202ENST00000348544 SLC25A34Q6PIV7 304 aa5.56□□□□□ -1.52
VPS39-202ENST00000348544 CLEC2AQ6UVW9 174 aa5.56□□□□□ -1.52
VPS39-202ENST00000348544 C1orf229Q6ZS94 237 aaPredicted RBP5.56□□□□□ -1.52
VPS39-202ENST00000348544 MDP1Q86V88 176 aa5.56□□□□□ -1.52
VPS39-202ENST00000348544 SNRNP40Q96DI7 357 aaKnown RBP5.56□□□□□ -1.52
VPS39-202ENST00000348544 MCRIP2Q9BUT9 160 aaKnown RBP5.56□□□□□ -1.52
VPS39-202ENST00000348544 NCOR1P1Q9H4R4 102 aa5.56□□□□□ -1.52
VPS39-202ENST00000348544 SCRT2Q9NQ03 307 aa5.56□□□□□ -1.52
VPS39-202ENST00000348544 C1RLQ9NZP8 487 aa5.56□□□□□ -1.52
VPS39-202ENST00000348544 TRGV8A0A0C4DH27 118 aa5.56□□□□□ -1.52
VPS39-202ENST00000348544 IGHV1-24A0A0C4DH33 117 aa5.56□□□□□ -1.52
VPS39-202ENST00000348544 K7ERU9 68 aa5.56□□□□□ -1.52
VPS39-202ENST00000348544 TOX4O94842 621 aa5.56□□□□□ -1.52
VPS39-202ENST00000348544 IGLC1P0CG04 106 aa5.56□□□□□ -1.52
VPS39-202ENST00000348544 GPR12P47775 334 aa5.56□□□□□ -1.52
VPS39-202ENST00000348544 CAMPP49913 170 aa5.56□□□□□ -1.52
VPS39-202ENST00000348544 UTF1Q5T230 341 aa5.56□□□□□ -1.52
VPS39-202ENST00000348544 C11orf53Q8IXP5 236 aa5.56□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms