RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 METTL1Q9UBP6 276 aaKnown RBP12.38□□□□□ -0.43
LIMS1-202ENST00000338045 DOPEY2Q9Y3R5 2298 aa12.38□□□□□ -0.43
LIMS1-202ENST00000338045 UBE2L5PA0A1B0GUS4 154 aa12.38□□□□□ -0.43
LIMS1-202ENST00000338045 NPFFO15130 113 aa12.38□□□□□ -0.43
LIMS1-202ENST00000338045 NDUFA3O95167 84 aa12.38□□□□□ -0.43
LIMS1-202ENST00000338045 S100A9P06702 114 aaKnown RBP12.38□□□□□ -0.43
LIMS1-202ENST00000338045 PAX6P26367 422 aa12.38□□□□□ -0.43
LIMS1-202ENST00000338045 BLOC1S1P78537 153 aa12.38□□□□□ -0.43
LIMS1-202ENST00000338045 C2orf83Q53S99 150 aa12.38□□□□□ -0.43
LIMS1-202ENST00000338045 CENPVQ7Z7K6 275 aaPredicted RBP12.38□□□□□ -0.43
LIMS1-202ENST00000338045 EIF4E3Q8N5X7 224 aaKnown RBP12.38□□□□□ -0.43
LIMS1-202ENST00000338045 MBD6Q96DN6 1003 aa12.38□□□□□ -0.43
LIMS1-202ENST00000338045 NUPL2O15504 423 aaKnown RBP12.37□□□□□ -0.43
LIMS1-202ENST00000338045 RNASE2P10153 161 aaKnown RBP12.37□□□□□ -0.43
LIMS1-202ENST00000338045 DLK1P80370 383 aa12.37□□□□□ -0.43
LIMS1-202ENST00000338045 TMEM182Q6ZP80 229 aaPredicted RBP12.37□□□□□ -0.43
LIMS1-202ENST00000338045 HSD17B13Q7Z5P4 300 aaPredicted RBP12.37□□□□□ -0.43
LIMS1-202ENST00000338045 PIP4P2Q8N4L2 257 aa12.37□□□□□ -0.43
LIMS1-202ENST00000338045 Q8N6K4 173 aa12.37□□□□□ -0.43
LIMS1-202ENST00000338045 OR2T10Q8NGZ9 312 aa12.37□□□□□ -0.43
LIMS1-202ENST00000338045 LYPD6BQ8NI32 183 aa12.37□□□□□ -0.43
LIMS1-202ENST00000338045 RSG1Q9BU20 258 aa12.37□□□□□ -0.43
LIMS1-202ENST00000338045 FBXL15Q9H469 300 aa12.37□□□□□ -0.43
LIMS1-202ENST00000338045 ANKRD17O75179 2603 aaKnown RBP12.37□□□□□ -0.43
LIMS1-202ENST00000338045 NBR2O15453 112 aa12.36□□□□□ -0.43
LIMS1-202ENST00000338045 IFNA4P05014 189 aa12.36□□□□□ -0.43
LIMS1-202ENST00000338045 SNRNP70P08621 437 aaKnown RBP12.36□□□□□ -0.43
LIMS1-202ENST00000338045 COMPP49747 757 aaPredicted RBP12.36□□□□□ -0.43
LIMS1-202ENST00000338045 ERHP84090 104 aaKnown RBP12.36□□□□□ -0.43
LIMS1-202ENST00000338045 WT1-ASQ06250 92 aa12.36□□□□□ -0.43
LIMS1-202ENST00000338045 MMDQ15546 238 aa12.36□□□□□ -0.43
LIMS1-202ENST00000338045 TIMM9Q9Y5J7 89 aa12.36□□□□□ -0.43
LIMS1-202ENST00000338045 SCO1O75880 301 aa12.36□□□□□ -0.43
LIMS1-202ENST00000338045 ACTL6BO94805 426 aa12.36□□□□□ -0.43
LIMS1-202ENST00000338045 GATA3P23771 443 aa12.36□□□□□ -0.43
LIMS1-202ENST00000338045 SSBP2P81877 361 aaPredicted RBP12.36□□□□□ -0.43
LIMS1-202ENST00000338045 LOXL1Q08397 574 aaPredicted RBP12.36□□□□□ -0.43
LIMS1-202ENST00000338045 AANATQ16613 207 aa12.36□□□□□ -0.43
LIMS1-202ENST00000338045 FBLN7Q53RD9 439 aa12.36□□□□□ -0.43
LIMS1-202ENST00000338045 BTNL8Q6UX41 500 aa12.36□□□□□ -0.43
LIMS1-202ENST00000338045 Q6ZRG5 221 aa12.36□□□□□ -0.43
LIMS1-202ENST00000338045 WDR83OSQ9Y284 106 aa12.36□□□□□ -0.43
LIMS1-202ENST00000338045 CENPEQ02224 2701 aa12.35□□□□□ -0.43
LIMS1-202ENST00000338045 IGHV1-69DA0A0B4J2H0 117 aa12.35□□□□□ -0.43
LIMS1-202ENST00000338045 FNDC10F2Z333 226 aa12.35□□□□□ -0.43
LIMS1-202ENST00000338045 TEX46H3BTG2 121 aa12.35□□□□□ -0.43
LIMS1-202ENST00000338045 IGHV1-69P01742 117 aa12.35□□□□□ -0.43
LIMS1-202ENST00000338045 CD24P25063 80 aa12.35□□□□□ -0.43
LIMS1-202ENST00000338045 SNCAP37840 140 aa12.35□□□□□ -0.43
LIMS1-202ENST00000338045 RPL27AP46776 148 aaKnown RBP12.35□□□□□ -0.43
LIMS1-202ENST00000338045 FHITP49789 147 aa12.35□□□□□ -0.43
LIMS1-202ENST00000338045 SERF2P84101 59 aa12.35□□□□□ -0.43
LIMS1-202ENST00000338045 TUSC1Q2TAM9 212 aa12.35□□□□□ -0.43
LIMS1-202ENST00000338045 POLQO75417 2590 aa12.35□□□□□ -0.43
LIMS1-202ENST00000338045 HELZ2Q9BYK8 2649 aaKnown RBP12.34□□□□□ -0.43
LIMS1-202ENST00000338045 IGLC7A0M8Q6 106 aa12.34□□□□□ -0.43
LIMS1-202ENST00000338045 NUDT19A8MXV4 375 aa12.34□□□□□ -0.43
LIMS1-202ENST00000338045 HNF4GQ14541 408 aa12.34□□□□□ -0.43
LIMS1-202ENST00000338045 TNXAQ16473 311 aa12.34□□□□□ -0.43
LIMS1-202ENST00000338045 PRSS57Q6UWY2 283 aa12.34□□□□□ -0.43
LIMS1-202ENST00000338045 HIF1ANQ9NWT6 349 aa12.34□□□□□ -0.43
LIMS1-202ENST00000338045 FBXO7Q9Y3I1 522 aa12.34□□□□□ -0.43
LIMS1-202ENST00000338045 FCN1O00602 326 aa12.34□□□□□ -0.43
LIMS1-202ENST00000338045 PRH1P02810 166 aa12.34□□□□□ -0.43
LIMS1-202ENST00000338045 SMIM6P0DI80 62 aa12.34□□□□□ -0.43
LIMS1-202ENST00000338045 FGF7P21781 194 aa12.34□□□□□ -0.43
LIMS1-202ENST00000338045 CAMLGP49069 296 aa12.34□□□□□ -0.43
LIMS1-202ENST00000338045 HES1Q14469 280 aa12.34□□□□□ -0.43
LIMS1-202ENST00000338045 AKR1C8PQ5T2L2 129 aa12.34□□□□□ -0.43
LIMS1-202ENST00000338045 DPPA3Q6W0C5 159 aa12.34□□□□□ -0.43
LIMS1-202ENST00000338045 LINC01356Q8N9X3 169 aa12.34□□□□□ -0.43
LIMS1-202ENST00000338045 NPCDR1Q9BY65 106 aa12.34□□□□□ -0.43
LIMS1-202ENST00000338045 KIAA1456Q9P272 454 aa12.34□□□□□ -0.43
LIMS1-202ENST00000338045 PLXNB1O43157 2135 aa12.33□□□□□ -0.44
LIMS1-202ENST00000338045 TRAV40A0A0B4J280 105 aa12.33□□□□□ -0.44
LIMS1-202ENST00000338045 MPDU1O75352 247 aa12.33□□□□□ -0.44
LIMS1-202ENST00000338045 OR13C7P0DN81 318 aa12.33□□□□□ -0.44
LIMS1-202ENST00000338045 RAB4AP20338 218 aa12.33□□□□□ -0.44
LIMS1-202ENST00000338045 S100PP25815 95 aa12.33□□□□□ -0.44
LIMS1-202ENST00000338045 BRS3P32247 399 aa12.33□□□□□ -0.44
LIMS1-202ENST00000338045 C5orf64Q2M2E5 130 aa12.33□□□□□ -0.44
LIMS1-202ENST00000338045 MAJINQ3KP22 176 aa12.33□□□□□ -0.44
LIMS1-202ENST00000338045 ARSJQ5FYB0 599 aaPredicted RBP12.33□□□□□ -0.44
LIMS1-202ENST00000338045 Q5PR19 223 aa12.33□□□□□ -0.44
LIMS1-202ENST00000338045 PVRIGQ6DKI7 326 aa12.33□□□□□ -0.44
LIMS1-202ENST00000338045 HIST2H2BCQ6DN03 193 aa12.33□□□□□ -0.44
LIMS1-202ENST00000338045 TREML4Q6UXN2 200 aa12.33□□□□□ -0.44
LIMS1-202ENST00000338045 IL34Q6ZMJ4 242 aa12.33□□□□□ -0.44
LIMS1-202ENST00000338045 MRPL41Q8IXM3 137 aaKnown RBP12.33□□□□□ -0.44
LIMS1-202ENST00000338045 ZNF114Q8NC26 417 aa12.33□□□□□ -0.44
LIMS1-202ENST00000338045 SRSF8Q9BRL6 282 aaKnown RBP12.33□□□□□ -0.44
LIMS1-202ENST00000338045 HRH4Q9H3N8 390 aa12.33□□□□□ -0.44
LIMS1-202ENST00000338045 SAV1Q9H4B6 383 aaPredicted RBP12.33□□□□□ -0.44
LIMS1-202ENST00000338045 C7orf69Q9H7B7 122 aa12.33□□□□□ -0.44
LIMS1-202ENST00000338045 LSM4Q9Y4Z0 139 aaKnown RBP12.33□□□□□ -0.44
LIMS1-202ENST00000338045 ABCA12Q86UK0 2595 aa12.33□□□□□ -0.44
LIMS1-202ENST00000338045 NAV2Q8IVL1 2488 aa12.32□□□□□ -0.44
LIMS1-202ENST00000338045 TEX22C9J3V5 150 aa12.32□□□□□ -0.44
LIMS1-202ENST00000338045 FAM106CPP0CH98 169 aa12.32□□□□□ -0.44
LIMS1-202ENST00000338045 PLGLAQ15195 96 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms