RNA–Protein interactions for RNA: ENST00000315249.11

RFFL-201, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 2 BASIC

Gene RFFL, Length 7,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-201ENST00000315249 GPR82Q96P67 336 aa11.27□□□□□ -0.6
RFFL-201ENST00000315249 LYRM2Q9NU23 88 aaPredicted RBP11.27□□□□□ -0.6
RFFL-201ENST00000315249 TRGV2A0A075B6R0 118 aa11.27□□□□□ -0.6
RFFL-201ENST00000315249 MORN2Q502X0 79 aa11.27□□□□□ -0.6
RFFL-201ENST00000315249 WDR25Q64LD2 544 aaPredicted RBP11.27□□□□□ -0.6
RFFL-201ENST00000315249 DPPA3Q6W0C5 159 aa11.27□□□□□ -0.6
RFFL-201ENST00000315249 OR1N2Q8NGR9 330 aa11.27□□□□□ -0.6
RFFL-201ENST00000315249 NUDT3O95989 172 aa11.27□□□□□ -0.61
RFFL-201ENST00000315249 ZNF474Q6S9Z5 364 aaPredicted RBP11.27□□□□□ -0.61
RFFL-201ENST00000315249 C12orf54Q6X4T0 127 aa11.27□□□□□ -0.61
RFFL-201ENST00000315249 H3BQ15 152 aa11.27□□□□□ -0.61
RFFL-201ENST00000315249 NPFFO15130 113 aa11.27□□□□□ -0.61
RFFL-201ENST00000315249 SAA1P0DJI8 122 aaPredicted RBP11.27□□□□□ -0.61
RFFL-201ENST00000315249 MYOD1P15172 320 aa11.27□□□□□ -0.61
RFFL-201ENST00000315249 ALX4Q9H161 411 aaPredicted RBP11.27□□□□□ -0.61
RFFL-201ENST00000315249 TRAV34A0A0B4J273 112 aa11.27□□□□□ -0.61
RFFL-201ENST00000315249 A0A1B0GTI1 187 aa11.27□□□□□ -0.61
RFFL-201ENST00000315249 ZP3P21754 424 aa11.27□□□□□ -0.61
RFFL-201ENST00000315249 RNASE4P34096 147 aaKnown RBP11.27□□□□□ -0.61
RFFL-201ENST00000315249 ZNF502Q8TBZ5 544 aa11.27□□□□□ -0.61
RFFL-201ENST00000315249 TECTAO75443 2155 aa11.27□□□□□ -0.61
RFFL-201ENST00000315249 CRYBB3P26998 211 aa11.27□□□□□ -0.61
RFFL-201ENST00000315249 NEU1Q99519 415 aa11.27□□□□□ -0.61
RFFL-201ENST00000315249 UCP3P55916 312 aa11.26□□□□□ -0.61
RFFL-201ENST00000315249 COL8A2P25067 703 aa11.26□□□□□ -0.61
RFFL-201ENST00000315249 HNRNPA3P51991 378 aaKnown RBP11.26□□□□□ -0.61
RFFL-201ENST00000315249 ZNF585BQ52M93 769 aa11.26□□□□□ -0.61
RFFL-201ENST00000315249 GLRX5Q86SX6 157 aa11.26□□□□□ -0.61
RFFL-201ENST00000315249 RPRMLQ8N4K4 120 aa11.26□□□□□ -0.61
RFFL-201ENST00000315249 RAB24Q969Q5 203 aa11.26□□□□□ -0.61
RFFL-201ENST00000315249 FUT9Q9Y231 359 aa11.26□□□□□ -0.61
RFFL-201ENST00000315249 AP4M1O00189 453 aa11.26□□□□□ -0.61
RFFL-201ENST00000315249 SRSF7Q16629 238 aaKnown RBP eCLIP11.26□□□□□ -0.61
RFFL-201ENST00000315249 C2orf83Q53S99 150 aa11.26□□□□□ -0.61
RFFL-201ENST00000315249 TMEM200BQ69YZ2 307 aa11.26□□□□□ -0.61
RFFL-201ENST00000315249 NPIPB7O75200 414 aa11.26□□□□□ -0.61
RFFL-201ENST00000315249 KLK15Q9H2R5 256 aa11.26□□□□□ -0.61
RFFL-201ENST00000315249 SRSF9Q13242 221 aaKnown RBP eCLIP11.26□□□□□ -0.61
RFFL-201ENST00000315249 HSPB8Q9UJY1 196 aa11.26□□□□□ -0.61
RFFL-201ENST00000315249 SIGLEC5O15389 551 aa11.26□□□□□ -0.61
RFFL-201ENST00000315249 YPEL1O60688 119 aa11.26□□□□□ -0.61
RFFL-201ENST00000315249 CD200R1LQ6Q8B3 271 aa11.26□□□□□ -0.61
RFFL-201ENST00000315249 SMIM8Q96KF7 97 aa11.26□□□□□ -0.61
RFFL-201ENST00000315249 YPEL2Q96QA6 119 aa11.26□□□□□ -0.61
RFFL-201ENST00000315249 RRHO14718 337 aa11.25□□□□□ -0.61
RFFL-201ENST00000315249 CCKARP32238 428 aa11.25□□□□□ -0.61
RFFL-201ENST00000315249 CYB561D1Q8N8Q1 229 aa11.25□□□□□ -0.61
RFFL-201ENST00000315249 SGMS2Q8NHU3 365 aa11.25□□□□□ -0.61
RFFL-201ENST00000315249 E7EQL1 145 aa11.25□□□□□ -0.61
RFFL-201ENST00000315249 RPL29P47914 159 aaKnown RBP11.25□□□□□ -0.61
RFFL-201ENST00000315249 CD300CQ08708 224 aa11.25□□□□□ -0.61
RFFL-201ENST00000315249 VAMP3Q15836 100 aa11.25□□□□□ -0.61
RFFL-201ENST00000315249 ZNF497Q6ZNH5 498 aa11.25□□□□□ -0.61
RFFL-201ENST00000315249 IFI27L2Q9H2X8 130 aa11.25□□□□□ -0.61
RFFL-201ENST00000315249 C7orf66A4D0T2 115 aa11.25□□□□□ -0.61
RFFL-201ENST00000315249 OR4C46A6NHA9 309 aa11.25□□□□□ -0.61
RFFL-201ENST00000315249 ZNF319Q9P2F9 582 aa11.25□□□□□ -0.61
RFFL-201ENST00000315249 IGHV2-26A0A0B4J1V2 119 aa11.25□□□□□ -0.61
RFFL-201ENST00000315249 TRAV20A0A0B4J274 112 aa11.25□□□□□ -0.61
RFFL-201ENST00000315249 BCL2P10415 239 aa11.25□□□□□ -0.61
RFFL-201ENST00000315249 IGFBP2P18065 325 aa11.25□□□□□ -0.61
RFFL-201ENST00000315249 ZP1P60852 638 aa11.25□□□□□ -0.61
RFFL-201ENST00000315249 OR10D4PQ8NGN7 298 aa11.25□□□□□ -0.61
RFFL-201ENST00000315249 KLHDC3Q9BQ90 382 aa11.25□□□□□ -0.61
RFFL-201ENST00000315249 SH3BGRL3Q9H299 93 aa11.25□□□□□ -0.61
RFFL-201ENST00000315249 WFDC12Q8WWY7 111 aa11.25□□□□□ -0.61
RFFL-201ENST00000315249 GSX1Q9H4S2 264 aaPredicted RBP11.25□□□□□ -0.61
RFFL-201ENST00000315249 A6NNC1 897 aa11.24□□□□□ -0.61
RFFL-201ENST00000315249 M0R381 172 aa11.24□□□□□ -0.61
RFFL-201ENST00000315249 SLC25A16P16260 332 aa11.24□□□□□ -0.61
RFFL-201ENST00000315249 NCMAPQ5T1S8 102 aa11.24□□□□□ -0.61
RFFL-201ENST00000315249 TBX15Q96SF7 602 aa11.24□□□□□ -0.61
RFFL-201ENST00000315249 EP400Q96L91 3159 aa11.24□□□□□ -0.61
RFFL-201ENST00000315249 DPRXA6NFQ7 191 aa11.24□□□□□ -0.61
RFFL-201ENST00000315249 LY6G6EA0A0G2JKS1 128 aa11.24□□□□□ -0.61
RFFL-201ENST00000315249 U3KQA8 63 aa11.24□□□□□ -0.61
RFFL-201ENST00000315249 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.24□□□□□ -0.61
RFFL-201ENST00000315249 TRAV14DV4A0A0A6YYC5 116 aa11.23□□□□□ -0.61
RFFL-201ENST00000315249 IQCJQ1A5X6 159 aa11.23□□□□□ -0.61
RFFL-201ENST00000315249 TMEM167AQ8TBQ9 72 aa11.23□□□□□ -0.61
RFFL-201ENST00000315249 FBLIM1Q8WUP2 373 aa11.23□□□□□ -0.61
RFFL-201ENST00000315249 RPRMQ9NS64 109 aa11.23□□□□□ -0.61
RFFL-201ENST00000315249 TRAV24A0A0B4J272 114 aa11.23□□□□□ -0.61
RFFL-201ENST00000315249 IGHG3P01860 377 aa11.23□□□□□ -0.61
RFFL-201ENST00000315249 ZNF385CQ66K41 422 aaPredicted RBP11.23□□□□□ -0.61
RFFL-201ENST00000315249 MLNRO43193 412 aa11.23□□□□□ -0.61
RFFL-201ENST00000315249 PRSS8Q16651 343 aa11.23□□□□□ -0.61
RFFL-201ENST00000315249 SMUG1Q53HV7 270 aa11.23□□□□□ -0.61
RFFL-201ENST00000315249 TEX45Q8NA69 505 aa11.23□□□□□ -0.61
RFFL-201ENST00000315249 PIP4P1Q86T03 277 aa11.23□□□□□ -0.61
RFFL-201ENST00000315249 OR10S1Q8NGN2 331 aa11.23□□□□□ -0.61
RFFL-201ENST00000315249 FAM131CQ96AQ9 280 aa11.23□□□□□ -0.61
RFFL-201ENST00000315249 RAMP3O60896 148 aa11.23□□□□□ -0.61
RFFL-201ENST00000315249 CLPSP04118 112 aa11.23□□□□□ -0.61
RFFL-201ENST00000315249 NBEAP1P0C6P0 100 aa11.23□□□□□ -0.61
RFFL-201ENST00000315249 MRPL32Q9BYC8 188 aaKnown RBP11.23□□□□□ -0.61
RFFL-201ENST00000315249 B4DEV8 164 aa11.23□□□□□ -0.61
RFFL-201ENST00000315249 GATA2P23769 480 aaPredicted RBP11.23□□□□□ -0.61
RFFL-201ENST00000315249 GAS1P54826 345 aa11.22□□□□□ -0.61
RFFL-201ENST00000315249 ZNF329Q86UD4 541 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms