RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 HIST1H2BHQ93079 126 aa11.77□□□□□ -0.52
CSPG4-201ENST00000308508 HIST1H2BNQ99877 126 aa11.77□□□□□ -0.52
CSPG4-201ENST00000308508 HIST1H2BMQ99879 126 aa11.77□□□□□ -0.52
CSPG4-201ENST00000308508 ABCA1O95477 2261 aa11.77□□□□□ -0.52
CSPG4-201ENST00000308508 DUX3Q96PT4 197 aa11.77□□□□□ -0.53
CSPG4-201ENST00000308508 Q9H3A6 140 aa11.77□□□□□ -0.53
CSPG4-201ENST00000308508 LGALS1P09382 135 aaKnown RBP11.77□□□□□ -0.53
CSPG4-201ENST00000308508 SFTA2Q6UW10 78 aa11.77□□□□□ -0.53
CSPG4-201ENST00000308508 OSR1Q8TAX0 266 aaPredicted RBP11.77□□□□□ -0.53
CSPG4-201ENST00000308508 KLF14Q8TD94 323 aaPredicted RBP11.77□□□□□ -0.53
CSPG4-201ENST00000308508 MS4A6AQ9H2W1 248 aa11.77□□□□□ -0.53
CSPG4-201ENST00000308508 WISP3O95389 354 aaPredicted RBP11.77□□□□□ -0.53
CSPG4-201ENST00000308508 IGFBP2P18065 325 aa11.77□□□□□ -0.53
CSPG4-201ENST00000308508 IGKCP01834 107 aa11.77□□□□□ -0.53
CSPG4-201ENST00000308508 PPBPP02775 128 aa11.77□□□□□ -0.53
CSPG4-201ENST00000308508 TSPAN7P41732 249 aa11.77□□□□□ -0.53
CSPG4-201ENST00000308508 ORMDL2Q53FV1 153 aa11.77□□□□□ -0.53
CSPG4-201ENST00000308508 ZNF784Q8NCA9 323 aaPredicted RBP11.77□□□□□ -0.53
CSPG4-201ENST00000308508 SCARF2Q96GP6 870 aaPredicted RBP11.77□□□□□ -0.53
CSPG4-201ENST00000308508 CITED2Q99967 270 aaPredicted RBP11.77□□□□□ -0.53
CSPG4-201ENST00000308508 LOC105371242A0A075B767 164 aa11.77□□□□□ -0.53
CSPG4-201ENST00000308508 SAA1P0DJI8 122 aaPredicted RBP11.77□□□□□ -0.53
CSPG4-201ENST00000308508 CHD3Q12873 2000 aaKnown RBP11.76□□□□□ -0.53
CSPG4-201ENST00000308508 RBBP6Q7Z6E9 1792 aaKnown RBP11.76□□□□□ -0.53
CSPG4-201ENST00000308508 LHX8Q68G74 356 aa11.76□□□□□ -0.53
CSPG4-201ENST00000308508 IGHV1-45A0A0A0MS14 117 aa11.76□□□□□ -0.53
CSPG4-201ENST00000308508 ATP5G3P48201 142 aa11.76□□□□□ -0.53
CSPG4-201ENST00000308508 NPIPB13A6NJU9 1138 aa11.76□□□□□ -0.53
CSPG4-201ENST00000308508 M0R2P5 195 aa11.76□□□□□ -0.53
CSPG4-201ENST00000308508 ASCL2Q99929 193 aa11.76□□□□□ -0.53
CSPG4-201ENST00000308508 DCTN5Q9BTE1 182 aa11.76□□□□□ -0.53
CSPG4-201ENST00000308508 CRPP02741 224 aa11.76□□□□□ -0.53
CSPG4-201ENST00000308508 RNASE4P34096 147 aaKnown RBP11.76□□□□□ -0.53
CSPG4-201ENST00000308508 OR9G4Q8NGQ1 327 aa11.76□□□□□ -0.53
CSPG4-201ENST00000308508 CCL20P78556 96 aa11.75□□□□□ -0.53
CSPG4-201ENST00000308508 RPP25Q9BUL9 199 aaKnown RBP11.75□□□□□ -0.53
CSPG4-201ENST00000308508 CHODLQ9H9P2 273 aa11.75□□□□□ -0.53
CSPG4-201ENST00000308508 TM4SF5O14894 197 aa11.75□□□□□ -0.53
CSPG4-201ENST00000308508 LURAP1LQ8IV03 231 aa11.75□□□□□ -0.53
CSPG4-201ENST00000308508 TRAV2A0A0B4J234 112 aa11.75□□□□□ -0.53
CSPG4-201ENST00000308508 CHTOPQ9Y3Y2 248 aaKnown RBP11.75□□□□□ -0.53
CSPG4-201ENST00000308508 PI4KAP42356 2102 aa11.75□□□□□ -0.53
CSPG4-201ENST00000308508 TMEM155Q4W5P6 130 aa11.75□□□□□ -0.53
CSPG4-201ENST00000308508 TM2D1Q9BX74 207 aa11.75□□□□□ -0.53
CSPG4-201ENST00000308508 RNASE7Q9H1E1 156 aaKnown RBP11.75□□□□□ -0.53
CSPG4-201ENST00000308508 OTORQ9NRC9 128 aa11.75□□□□□ -0.53
CSPG4-201ENST00000308508 KMT2EQ8IZD2 1858 aa11.75□□□□□ -0.53
CSPG4-201ENST00000308508 LINC01549A6NIU2 74 aa11.75□□□□□ -0.53
CSPG4-201ENST00000308508 ATRAIDQ6UW56 229 aa11.75□□□□□ -0.53
CSPG4-201ENST00000308508 OR5P3Q8WZ94 311 aa11.75□□□□□ -0.53
CSPG4-201ENST00000308508 ERG28Q9UKR5 140 aa11.75□□□□□ -0.53
CSPG4-201ENST00000308508 SPINT1O43278 529 aa11.75□□□□□ -0.53
CSPG4-201ENST00000308508 CD160O95971 181 aa11.75□□□□□ -0.53
CSPG4-201ENST00000308508 UCP1P25874 307 aa11.75□□□□□ -0.53
CSPG4-201ENST00000308508 PNKDQ8N490 385 aa11.75□□□□□ -0.53
CSPG4-201ENST00000308508 J3QW42 95 aa11.74□□□□□ -0.53
CSPG4-201ENST00000308508 TMEM42Q69YG0 159 aa11.74□□□□□ -0.53
CSPG4-201ENST00000308508 LRRK1Q38SD2 2015 aa11.74□□□□□ -0.53
CSPG4-201ENST00000308508 KBTBD11-OT1A0A1B0GTJ5 212 aa11.74□□□□□ -0.53
CSPG4-201ENST00000308508 MSGN1A6NI15 193 aa11.74□□□□□ -0.53
CSPG4-201ENST00000308508 KLF4O43474 513 aa11.74□□□□□ -0.53
CSPG4-201ENST00000308508 ESDP10768 282 aa11.74□□□□□ -0.53
CSPG4-201ENST00000308508 TMEM86BQ8N661 226 aa11.74□□□□□ -0.53
CSPG4-201ENST00000308508 CEP290O15078 2479 aa11.74□□□□□ -0.53
CSPG4-201ENST00000308508 TNFSF13O75888 250 aa11.74□□□□□ -0.53
CSPG4-201ENST00000308508 SSBP2P81877 361 aaPredicted RBP11.74□□□□□ -0.53
CSPG4-201ENST00000308508 FOXA2Q9Y261 457 aaPredicted RBP11.74□□□□□ -0.53
CSPG4-201ENST00000308508 A0A0G2JLM5 398 aa11.74□□□□□ -0.53
CSPG4-201ENST00000308508 SMPXQ9UHP9 88 aa11.74□□□□□ -0.53
CSPG4-201ENST00000308508 STRCP1A6NGW2 1772 aa11.74□□□□□ -0.53
CSPG4-201ENST00000308508 TRGV3P03979 118 aa11.74□□□□□ -0.53
CSPG4-201ENST00000308508 HIST1H2BLQ99880 126 aa11.74□□□□□ -0.53
CSPG4-201ENST00000308508 OSTCQ9NRP0 149 aa11.74□□□□□ -0.53
CSPG4-201ENST00000308508 S100A7L2Q5SY68 101 aa11.74□□□□□ -0.53
CSPG4-201ENST00000308508 DOPEY2Q9Y3R5 2298 aa11.74□□□□□ -0.53
CSPG4-201ENST00000308508 RPL39P5Q59GN2 51 aa11.73□□□□□ -0.53
CSPG4-201ENST00000308508 CENPVQ7Z7K6 275 aaPredicted RBP11.73□□□□□ -0.53
CSPG4-201ENST00000308508 MUC21A0A0G2JKD1 596 aa11.73□□□□□ -0.53
CSPG4-201ENST00000308508 MUC21A0A140T8X8 626 aa11.73□□□□□ -0.53
CSPG4-201ENST00000308508 MUC21Q5SSG8 566 aa11.73□□□□□ -0.53
CSPG4-201ENST00000308508 LOXL4Q96JB6 756 aa11.73□□□□□ -0.53
CSPG4-201ENST00000308508 TRAV8-1A0A0A6YYK1 113 aa11.73□□□□□ -0.53
CSPG4-201ENST00000308508 HEPN1Q6WQI6 88 aa11.73□□□□□ -0.53
CSPG4-201ENST00000308508 TMEM238C9JI98 176 aa11.73□□□□□ -0.53
CSPG4-201ENST00000308508 NR2C2APQ86WQ0 139 aa11.73□□□□□ -0.53
CSPG4-201ENST00000308508 FABP5P3A8MUU1 101 aa11.73□□□□□ -0.53
CSPG4-201ENST00000308508 ZNF688P0C7X2 276 aa11.73□□□□□ -0.53
CSPG4-201ENST00000308508 ATP5L2Q7Z4Y8 100 aa11.73□□□□□ -0.53
CSPG4-201ENST00000308508 EDA2RQ9HAV5 297 aa11.73□□□□□ -0.53
CSPG4-201ENST00000308508 TMEM242Q9NWH2 141 aa11.73□□□□□ -0.53
CSPG4-201ENST00000308508 SPRED2Q7Z698 418 aa11.73□□□□□ -0.53
CSPG4-201ENST00000308508 HIST1H4AP62805 103 aaKnown RBP11.73□□□□□ -0.53
CSPG4-201ENST00000308508 DUSP15Q9H1R2 295 aaPredicted RBP11.73□□□□□ -0.53
CSPG4-201ENST00000308508 MAJINQ3KP22 176 aa11.72□□□□□ -0.53
CSPG4-201ENST00000308508 PLPPR1Q8TBJ4 325 aa11.72□□□□□ -0.53
CSPG4-201ENST00000308508 TBX6O95947 436 aaPredicted RBP11.72□□□□□ -0.53
CSPG4-201ENST00000308508 RTBDNQ9BSG5 229 aaPredicted RBP11.72□□□□□ -0.53
CSPG4-201ENST00000308508 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.72□□□□□ -0.53
CSPG4-201ENST00000308508 TRAV5A0A0B4J249 113 aa11.72□□□□□ -0.53
CSPG4-201ENST00000308508 CEP250Q9BV73 2442 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms