RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 HSPB9Q9BQS6 159 aa4.49□□□□□ -1.69
SCN1A-201ENST00000303395 SPXQ9BT56 116 aa4.49□□□□□ -1.69
SCN1A-201ENST00000303395 TRGV2A0A075B6R0 118 aa4.49□□□□□ -1.69
SCN1A-201ENST00000303395 PGPEP1LA6NFU8 196 aa4.49□□□□□ -1.69
SCN1A-201ENST00000303395 OR11H12B2RN74 326 aa4.49□□□□□ -1.69
SCN1A-201ENST00000303395 PIN1P1O15428 100 aa4.49□□□□□ -1.69
SCN1A-201ENST00000303395 TSPAN2O60636 221 aa4.49□□□□□ -1.69
SCN1A-201ENST00000303395 HYPMO75409 117 aa4.49□□□□□ -1.69
SCN1A-201ENST00000303395 PAX2Q02962 417 aa4.49□□□□□ -1.69
SCN1A-201ENST00000303395 PYY3Q5JQD4 70 aa4.49□□□□□ -1.69
SCN1A-201ENST00000303395 TMEM42Q69YG0 159 aa4.49□□□□□ -1.69
SCN1A-201ENST00000303395 OR11H1Q8NG94 326 aa4.49□□□□□ -1.69
SCN1A-201ENST00000303395 OR11H2Q8NH07 326 aa4.49□□□□□ -1.69
SCN1A-201ENST00000303395 FGF11Q92914 225 aa4.49□□□□□ -1.69
SCN1A-201ENST00000303395 DHCR7Q9UBM7 475 aaKnown RBP4.49□□□□□ -1.69
SCN1A-201ENST00000303395 TBC1D29Q9UFV1 150 aa4.49□□□□□ -1.69
SCN1A-201ENST00000303395 CHKB-CPT1BH3BT56 60 aa4.48□□□□□ -1.69
SCN1A-201ENST00000303395 CST7O76096 145 aa4.48□□□□□ -1.69
SCN1A-201ENST00000303395 NANOS3P60323 173 aaKnown RBP4.48□□□□□ -1.69
SCN1A-201ENST00000303395 RNF182Q8N6D2 247 aa4.48□□□□□ -1.69
SCN1A-201ENST00000303395 NRSN2Q9GZP1 204 aa4.48□□□□□ -1.69
SCN1A-201ENST00000303395 VN1R1Q9GZP7 353 aa4.48□□□□□ -1.69
SCN1A-201ENST00000303395 LAMTOR3Q9UHA4 124 aa4.48□□□□□ -1.69
SCN1A-201ENST00000303395 TINAGQ9UJW2 476 aa4.48□□□□□ -1.69
SCN1A-201ENST00000303395 A0A1B0GV90 55 aa4.48□□□□□ -1.69
SCN1A-201ENST00000303395 TCF21O43680 179 aa4.48□□□□□ -1.69
SCN1A-201ENST00000303395 DPM2O94777 84 aa4.48□□□□□ -1.69
SCN1A-201ENST00000303395 GLI4P10075 376 aa4.48□□□□□ -1.69
SCN1A-201ENST00000303395 UCNP55089 124 aa4.48□□□□□ -1.69
SCN1A-201ENST00000303395 PSG5Q15238 335 aa4.48□□□□□ -1.69
SCN1A-201ENST00000303395 PSG3Q16557 428 aa4.48□□□□□ -1.69
SCN1A-201ENST00000303395 ORMDL2Q53FV1 153 aa4.48□□□□□ -1.69
SCN1A-201ENST00000303395 OR4X1Q8NH49 305 aa4.48□□□□□ -1.69
SCN1A-201ENST00000303395 ZNF48Q96MX3 618 aaPredicted RBP4.48□□□□□ -1.69
SCN1A-201ENST00000303395 ERRFI1Q9UJM3 462 aaPredicted RBP4.48□□□□□ -1.69
SCN1A-201ENST00000303395 SPCS1Q9Y6A9 102 aa4.48□□□□□ -1.69
SCN1A-201ENST00000303395 PXMP4Q9Y6I8 212 aa4.48□□□□□ -1.69
SCN1A-201ENST00000303395 TNRC6AQ8NDV7 1962 aaKnown RBP4.48□□□□□ -1.69
SCN1A-201ENST00000303395 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.48□□□□□ -1.69
SCN1A-201ENST00000303395 KIR2DL5BA0A0G2JN68 375 aa4.48□□□□□ -1.69
SCN1A-201ENST00000303395 KIR2DL5BA0A0G2JPC4 375 aa4.48□□□□□ -1.69
SCN1A-201ENST00000303395 MARCH11A6NNE9 402 aa4.48□□□□□ -1.69
SCN1A-201ENST00000303395 ATXN7O15265 892 aaPredicted RBP4.48□□□□□ -1.69
SCN1A-201ENST00000303395 TMEM144Q7Z5S9 345 aa4.48□□□□□ -1.69
SCN1A-201ENST00000303395 KIR2DL5AQ8N109 375 aa4.48□□□□□ -1.69
SCN1A-201ENST00000303395 LRRC75AQ8NAA5 344 aa4.48□□□□□ -1.69
SCN1A-201ENST00000303395 LINC01555Q8NAE3 123 aa4.48□□□□□ -1.69
SCN1A-201ENST00000303395 CBLN4Q9NTU7 201 aa4.48□□□□□ -1.69
SCN1A-201ENST00000303395 RNF115Q9Y4L5 304 aa4.48□□□□□ -1.69
SCN1A-201ENST00000303395 SONP18583 2426 aaKnown RBP4.48□□□□□ -1.69
SCN1A-201ENST00000303395 TRAV12-3A0A0B4J271 114 aa4.48□□□□□ -1.69
SCN1A-201ENST00000303395 OOSP1A8MZH6 123 aa4.48□□□□□ -1.69
SCN1A-201ENST00000303395 C1QL1O75973 258 aa4.48□□□□□ -1.69
SCN1A-201ENST00000303395 GAPTQ8N292 157 aa4.48□□□□□ -1.69
SCN1A-201ENST00000303395 ZNF492Q9P255 531 aa4.48□□□□□ -1.69
SCN1A-201ENST00000303395 F2Z2F3 143 aa4.48□□□□□ -1.69
SCN1A-201ENST00000303395 C3orf80F5H4A9 247 aa4.48□□□□□ -1.69
SCN1A-201ENST00000303395 HIST1H4AP62805 103 aaKnown RBP4.48□□□□□ -1.69
SCN1A-201ENST00000303395 CCL14Q16627 93 aa4.48□□□□□ -1.69
SCN1A-201ENST00000303395 CHCHD2P9Q5T1J5 151 aaPredicted RBP4.48□□□□□ -1.69
SCN1A-201ENST00000303395 NEGR1Q7Z3B1 354 aa4.48□□□□□ -1.69
SCN1A-201ENST00000303395 C8orf46Q8TAG6 207 aa4.48□□□□□ -1.69
SCN1A-201ENST00000303395 ZPLD1Q8TCW7 415 aa4.48□□□□□ -1.69
SCN1A-201ENST00000303395 C11orf52Q96A22 123 aa4.48□□□□□ -1.69
SCN1A-201ENST00000303395 TRAV8-2A0A0B4J237 113 aa4.48□□□□□ -1.69
SCN1A-201ENST00000303395 METTL12A8MUP2 240 aa4.48□□□□□ -1.69
SCN1A-201ENST00000303395 PLNP26678 52 aa4.48□□□□□ -1.69
SCN1A-201ENST00000303395 ERVK11-1P61568 191 aa4.48□□□□□ -1.69
SCN1A-201ENST00000303395 FOXL2NBQ6ZUU3 175 aa4.48□□□□□ -1.69
SCN1A-201ENST00000303395 RTN4RL2Q86UN3 420 aa4.48□□□□□ -1.69
SCN1A-201ENST00000303395 CXorf67Q86X51 503 aaPredicted RBP4.48□□□□□ -1.69
SCN1A-201ENST00000303395 DNAJC30Q96LL9 226 aa4.48□□□□□ -1.69
SCN1A-201ENST00000303395 SIGMAR1Q99720 223 aa4.48□□□□□ -1.69
SCN1A-201ENST00000303395 CCL19Q99731 98 aa4.48□□□□□ -1.69
SCN1A-201ENST00000303395 PKIGQ9Y2B9 76 aa4.48□□□□□ -1.69
SCN1A-201ENST00000303395 COL11A2P13942 1736 aaPredicted RBP4.48□□□□□ -1.69
SCN1A-201ENST00000303395 ADAMTSL1Q8N6G6 1762 aa4.48□□□□□ -1.69
SCN1A-201ENST00000303395 TRAV41A0A0B4J266 112 aa4.47□□□□□ -1.69
SCN1A-201ENST00000303395 A0A1B0GWB2 263 aa4.47□□□□□ -1.69
SCN1A-201ENST00000303395 NKX2-6A6NCS4 301 aa4.47□□□□□ -1.69
SCN1A-201ENST00000303395 ZG16O60844 167 aa4.47□□□□□ -1.69
SCN1A-201ENST00000303395 CRYBB3P26998 211 aa4.47□□□□□ -1.69
SCN1A-201ENST00000303395 CCL7P80098 99 aa4.47□□□□□ -1.69
SCN1A-201ENST00000303395 GUCA2AQ02747 115 aa4.47□□□□□ -1.69
SCN1A-201ENST00000303395 SSPNQ14714 243 aa4.47□□□□□ -1.69
SCN1A-201ENST00000303395 SHISA5Q8N114 240 aa4.47□□□□□ -1.69
SCN1A-201ENST00000303395 TMEM54Q969K7 222 aa4.47□□□□□ -1.69
SCN1A-201ENST00000303395 ATP6V0BQ99437 205 aa4.47□□□□□ -1.69
SCN1A-201ENST00000303395 WDR83OSQ9Y284 106 aa4.47□□□□□ -1.69
SCN1A-201ENST00000303395 TRAV14DV4A0A0A6YYC5 116 aa4.47□□□□□ -1.69
SCN1A-201ENST00000303395 TMEM202A6NGA9 273 aa4.47□□□□□ -1.69
SCN1A-201ENST00000303395 EFNB2P52799 333 aa4.47□□□□□ -1.69
SCN1A-201ENST00000303395 CX3CL1P78423 397 aa4.47□□□□□ -1.69
SCN1A-201ENST00000303395 MMDQ15546 238 aa4.47□□□□□ -1.69
SCN1A-201ENST00000303395 SFTA2Q6UW10 78 aa4.47□□□□□ -1.69
SCN1A-201ENST00000303395 ANKRD37Q7Z713 158 aa4.47□□□□□ -1.69
SCN1A-201ENST00000303395 C12orf76Q8N812 135 aaPredicted RBP4.47□□□□□ -1.69
SCN1A-201ENST00000303395 ANAPC13Q9BS18 74 aa4.47□□□□□ -1.69
SCN1A-201ENST00000303395 NYNRINQ9P2P1 1898 aaKnown RBP4.47□□□□□ -1.69
SCN1A-201ENST00000303395 B4GALT1P15291 398 aa4.47□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms