RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 PTPRBP23467 1997 aa13.58□□□□□ -0.24
VPS54-201ENST00000272322 IGLV3-9A0A075B6K5 115 aa13.58□□□□□ -0.24
VPS54-201ENST00000272322 TRBV24-1A0A075B6N3 115 aa13.58□□□□□ -0.24
VPS54-201ENST00000272322 TOX4O94842 621 aa13.58□□□□□ -0.24
VPS54-201ENST00000272322 CRYABP02511 175 aaKnown RBP13.58□□□□□ -0.24
VPS54-201ENST00000272322 MRPL41Q8IXM3 137 aaKnown RBP13.58□□□□□ -0.24
VPS54-201ENST00000272322 LINC01560Q8TB33 94 aa13.58□□□□□ -0.24
VPS54-201ENST00000272322 FAM57AQ8TBR7 257 aa13.58□□□□□ -0.24
VPS54-201ENST00000272322 DDB2Q92466 427 aa13.58□□□□□ -0.24
VPS54-201ENST00000272322 TRGV8A0A0C4DH27 118 aa13.57□□□□□ -0.24
VPS54-201ENST00000272322 NDUFS6O75380 124 aaKnown RBP13.57□□□□□ -0.24
VPS54-201ENST00000272322 GCHFRP30047 84 aa13.57□□□□□ -0.24
VPS54-201ENST00000272322 ZNF788Q6ZQV5 615 aa13.57□□□□□ -0.24
VPS54-201ENST00000272322 TMEM256Q8N2U0 113 aa13.57□□□□□ -0.24
VPS54-201ENST00000272322 TPSG1Q9NRR2 321 aa13.57□□□□□ -0.24
VPS54-201ENST00000272322 FCN3O75636 299 aa13.57□□□□□ -0.24
VPS54-201ENST00000272322 RAB4BP61018 213 aa13.57□□□□□ -0.24
VPS54-201ENST00000272322 MORN5Q5VZ52 161 aa13.57□□□□□ -0.24
VPS54-201ENST00000272322 CTDSP1Q9GZU7 261 aa13.57□□□□□ -0.24
VPS54-201ENST00000272322 TRAPPC1Q9Y5R8 145 aa13.57□□□□□ -0.24
VPS54-201ENST00000272322 SLC25A17O43808 307 aa13.56□□□□□ -0.24
VPS54-201ENST00000272322 CA1P00915 261 aaPredicted RBP13.56□□□□□ -0.24
VPS54-201ENST00000272322 IGHV2-70P01814 119 aa13.56□□□□□ -0.24
VPS54-201ENST00000272322 CGB3P0DN86 165 aa13.56□□□□□ -0.24
VPS54-201ENST00000272322 CGB7P0DN87 165 aa13.56□□□□□ -0.24
VPS54-201ENST00000272322 RAB31Q13636 194 aa13.56□□□□□ -0.24
VPS54-201ENST00000272322 RTL8BQ17RB0 113 aa13.56□□□□□ -0.24
VPS54-201ENST00000272322 KIAA1644Q3SXP7 199 aa13.56□□□□□ -0.24
VPS54-201ENST00000272322 TMEM200BQ69YZ2 307 aa13.56□□□□□ -0.24
VPS54-201ENST00000272322 SRD5A3Q9H8P0 318 aa13.56□□□□□ -0.24
VPS54-201ENST00000272322 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.56□□□□□ -0.249e-7■■■■■ 28.9
VPS54-201ENST00000272322 TEX50A0A1B0GTY4 177 aa13.56□□□□□ -0.24
VPS54-201ENST00000272322 hADV38S2A0JD32 116 aa13.56□□□□□ -0.24
VPS54-201ENST00000272322 CEACAM4O75871 244 aa13.56□□□□□ -0.24
VPS54-201ENST00000272322 ZNF90Q03938 601 aa13.56□□□□□ -0.24
VPS54-201ENST00000272322 NABP2Q9BQ15 211 aa13.56□□□□□ -0.24
VPS54-201ENST00000272322 C17orf100A8MU93 164 aa13.56□□□□□ -0.24
VPS54-201ENST00000272322 AMBPP02760 352 aa13.56□□□□□ -0.24
VPS54-201ENST00000272322 OPRK1P41145 380 aa13.56□□□□□ -0.24
VPS54-201ENST00000272322 TCTEX1D1Q8N7M0 179 aa13.56□□□□□ -0.24
VPS54-201ENST00000272322 FAM90A27PA6NNH2 459 aa13.55□□□□□ -0.24
VPS54-201ENST00000272322 STAG3L2P0CL84 134 aa13.55□□□□□ -0.24
VPS54-201ENST00000272322 STAG3L3P0CL85 134 aa13.55□□□□□ -0.24
VPS54-201ENST00000272322 NUBP1P53384 320 aa13.55□□□□□ -0.24
VPS54-201ENST00000272322 ERVFC1-1P60608 527 aa13.55□□□□□ -0.24
VPS54-201ENST00000272322 PRSS33Q8NF86 280 aa13.55□□□□□ -0.24
VPS54-201ENST00000272322 RNASE7Q9H1E1 156 aaKnown RBP13.55□□□□□ -0.24
VPS54-201ENST00000272322 RPUSD1Q9UJJ7 312 aaKnown RBP13.55□□□□□ -0.24
VPS54-201ENST00000272322 DSCAML1Q8TD84 2053 aa13.55□□□□□ -0.24
VPS54-201ENST00000272322 NUPR1O60356 82 aa13.55□□□□□ -0.24
VPS54-201ENST00000272322 CXorf1O96002 111 aa13.55□□□□□ -0.24
VPS54-201ENST00000272322 COX7A1P24310 79 aa13.55□□□□□ -0.24
VPS54-201ENST00000272322 GRNP28799 593 aaKnown RBP13.55□□□□□ -0.24
VPS54-201ENST00000272322 VWC2Q2TAL6 325 aa13.55□□□□□ -0.24
VPS54-201ENST00000272322 SFRP2Q96HF1 295 aa13.55□□□□□ -0.24
VPS54-201ENST00000272322 SFXN3Q9BWM7 321 aa13.55□□□□□ -0.24
VPS54-201ENST00000272322 GSX1Q9H4S2 264 aaPredicted RBP13.55□□□□□ -0.24
VPS54-201ENST00000272322 RAI1Q7Z5J4 1906 aaPredicted RBP13.55□□□□□ -0.24
VPS54-201ENST00000272322 OR1P1Q8NH06 330 aa13.55□□□□□ -0.24
VPS54-201ENST00000272322 PPIAL4EA0A075B759 164 aa13.54□□□□□ -0.24
VPS54-201ENST00000272322 PPIAL4DF5H284 164 aa13.54□□□□□ -0.24
VPS54-201ENST00000272322 THBDP07204 575 aa13.54□□□□□ -0.24
VPS54-201ENST00000272322 OR5G3P0C626 314 aa13.54□□□□□ -0.24
VPS54-201ENST00000272322 PPIAL4FP0DN26 164 aa13.54□□□□□ -0.24
VPS54-201ENST00000272322 PYYP10082 97 aa13.54□□□□□ -0.24
VPS54-201ENST00000272322 TNFRSF1AP19438 455 aa13.54□□□□□ -0.24
VPS54-201ENST00000272322 CD24P25063 80 aa13.54□□□□□ -0.24
VPS54-201ENST00000272322 RHOBP62745 196 aa13.54□□□□□ -0.24
VPS54-201ENST00000272322 PQLC2Q6ZP29 291 aa13.54□□□□□ -0.24
VPS54-201ENST00000272322 ZNF714Q96N38 554 aa13.54□□□□□ -0.24
VPS54-201ENST00000272322 PARD6GQ9BYG4 376 aaPredicted RBP13.54□□□□□ -0.24
VPS54-201ENST00000272322 PPIAL4AQ9Y536 164 aa13.54□□□□□ -0.24
VPS54-201ENST00000272322 TRAV34A0A0B4J273 112 aa13.54□□□□□ -0.24
VPS54-201ENST00000272322 PRSS46E5RG02 174 aa13.54□□□□□ -0.24
VPS54-201ENST00000272322 PRR27Q6MZM9 219 aa13.54□□□□□ -0.24
VPS54-201ENST00000272322 KCNIP4Q6PIL6 250 aa13.54□□□□□ -0.24
VPS54-201ENST00000272322 KIR3DL3Q8N743 410 aa13.54□□□□□ -0.24
VPS54-201ENST00000272322 TMEM14BQ9NUH8 114 aa13.54□□□□□ -0.24
VPS54-201ENST00000272322 TMEM242Q9NWH2 141 aa13.54□□□□□ -0.24
VPS54-201ENST00000272322 PITPNC1Q9UKF7 332 aa13.54□□□□□ -0.24
VPS54-201ENST00000272322 CACNA1AO00555 2505 aa13.53□□□□□ -0.24
VPS54-201ENST00000272322 HIVEP3Q5T1R4 2406 aa13.53□□□□□ -0.24
VPS54-201ENST00000272322 NKX6-3A6NJ46 265 aa13.53□□□□□ -0.24
VPS54-201ENST00000272322 MOSP00540 346 aa13.53□□□□□ -0.24
VPS54-201ENST00000272322 CFHR2P36980 270 aa13.53□□□□□ -0.24
VPS54-201ENST00000272322 NPIPB3Q92617 1050 aa13.53□□□□□ -0.24
VPS54-201ENST00000272322 SSBP3Q9BWW4 388 aaPredicted RBP13.53□□□□□ -0.24
VPS54-201ENST00000272322 TUBG2Q9NRH3 451 aa13.53□□□□□ -0.24
VPS54-201ENST00000272322 CENPEQ02224 2701 aa13.53□□□□□ -0.24
VPS54-201ENST00000272322 PDE6DO43924 150 aa13.53□□□□□ -0.24
VPS54-201ENST00000272322 ORM2P19652 201 aa13.53□□□□□ -0.24
VPS54-201ENST00000272322 CNTFRP26992 372 aa13.53□□□□□ -0.24
VPS54-201ENST00000272322 DEFA6Q01524 100 aa13.53□□□□□ -0.24
VPS54-201ENST00000272322 ZNF439Q8NDP4 499 aa13.53□□□□□ -0.24
VPS54-201ENST00000272322 OR10G8Q8NGN5 311 aa13.53□□□□□ -0.24
VPS54-201ENST00000272322 BLNKQ8WV28 456 aa13.53□□□□□ -0.24
VPS54-201ENST00000272322 ZNF729A6NN14 1252 aaPredicted RBP13.52□□□□□ -0.24
VPS54-201ENST00000272322 K7EN84 100 aa13.52□□□□□ -0.24
VPS54-201ENST00000272322 CEACAM8P31997 349 aaPredicted RBP13.52□□□□□ -0.24
VPS54-201ENST00000272322 IER3P46695 156 aa13.52□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms