RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 STAG3L2P0CL84 134 aa10.43□□□□□ -0.74
LIG1-201ENST00000263274 STAG3L3P0CL85 134 aa10.43□□□□□ -0.74
LIG1-201ENST00000263274 CHRNB4P30926 498 aa10.43□□□□□ -0.74
LIG1-201ENST00000263274 GNG4P50150 75 aa10.43□□□□□ -0.74
LIG1-201ENST00000263274 RELBQ01201 579 aa10.43□□□□□ -0.74
LIG1-201ENST00000263274 GCSAMQ8N6F7 178 aa10.43□□□□□ -0.74
LIG1-201ENST00000263274 RNASE7Q9H1E1 156 aaKnown RBP10.43□□□□□ -0.74
LIG1-201ENST00000263274 IGF2RP11717 2491 aa10.43□□□□□ -0.74
LIG1-201ENST00000263274 TRAV34A0A0B4J273 112 aa10.43□□□□□ -0.74
LIG1-201ENST00000263274 HELTA6NFD8 242 aa10.43□□□□□ -0.74
LIG1-201ENST00000263274 J3QR06 171 aa10.43□□□□□ -0.74
LIG1-201ENST00000263274 SERF1AO75920 110 aa10.43□□□□□ -0.74
LIG1-201ENST00000263274 NTF3P20783 257 aa10.43□□□□□ -0.74
LIG1-201ENST00000263274 TDRG1Q3Y452 100 aa10.43□□□□□ -0.74
LIG1-201ENST00000263274 BHLHA15Q7RTS1 189 aaPredicted RBP10.43□□□□□ -0.74
LIG1-201ENST00000263274 TCTEX1D1Q8N7M0 179 aa10.43□□□□□ -0.74
LIG1-201ENST00000263274 SNRNP40Q96DI7 357 aaKnown RBP10.43□□□□□ -0.74
LIG1-201ENST00000263274 MPDU1O75352 247 aa10.43□□□□□ -0.74
LIG1-201ENST00000263274 IGKV3-15P01624 115 aa10.43□□□□□ -0.74
LIG1-201ENST00000263274 PRR27Q6MZM9 219 aa10.43□□□□□ -0.74
LIG1-201ENST00000263274 CLCF1Q9UBD9 225 aa10.43□□□□□ -0.74
LIG1-201ENST00000263274 OR51B2Q9Y5P1 312 aa10.43□□□□□ -0.74
LIG1-201ENST00000263274 SAA2-SAA4A0A096LPE2 208 aa10.42□□□□□ -0.74
LIG1-201ENST00000263274 F2Z2F3 143 aa10.42□□□□□ -0.74
LIG1-201ENST00000263274 SAA2P0DJI9 122 aaPredicted RBP10.42□□□□□ -0.74
LIG1-201ENST00000263274 TPPP2P59282 170 aa10.42□□□□□ -0.74
LIG1-201ENST00000263274 KRTCAP3Q53RY4 240 aa10.42□□□□□ -0.74
LIG1-201ENST00000263274 MMD2Q8IY49 270 aa10.42□□□□□ -0.74
LIG1-201ENST00000263274 ZCCHC24Q8N2G6 241 aaKnown RBP10.42□□□□□ -0.74
LIG1-201ENST00000263274 SGK494Q96LW2 274 aa10.42□□□□□ -0.74
LIG1-201ENST00000263274 VPS25Q9BRG1 176 aa10.42□□□□□ -0.74
LIG1-201ENST00000263274 TRGV10A0A0A0MS01 117 aa10.42□□□□□ -0.74
LIG1-201ENST00000263274 SPAARA0A1B0GVQ0 90 aa10.42□□□□□ -0.74
LIG1-201ENST00000263274 PRR33A8MZF0 331 aa10.42□□□□□ -0.74
LIG1-201ENST00000263274 CRYABP02511 175 aaKnown RBP10.42□□□□□ -0.74
LIG1-201ENST00000263274 HSPE1P61604 102 aaKnown RBP10.42□□□□□ -0.74
LIG1-201ENST00000263274 EIF4EBP1Q13541 118 aaPredicted RBP10.42□□□□□ -0.74
LIG1-201ENST00000263274 TRIP6Q15654 476 aaKnown RBP10.42□□□□□ -0.74
LIG1-201ENST00000263274 TIGITQ495A1 244 aa10.42□□□□□ -0.74
LIG1-201ENST00000263274 COL5A1-AS1Q5SY13 56 aa10.42□□□□□ -0.74
LIG1-201ENST00000263274 TMEM108Q6UXF1 575 aa10.42□□□□□ -0.74
LIG1-201ENST00000263274 C1orf229Q6ZS94 237 aaPredicted RBP10.42□□□□□ -0.74
LIG1-201ENST00000263274 BTF3L4Q96K17 158 aa10.42□□□□□ -0.74
LIG1-201ENST00000263274 JPT1Q9UK76 154 aa10.42□□□□□ -0.74
LIG1-201ENST00000263274 KLF3P57682 345 aaPredicted RBP10.42□□□□□ -0.74
LIG1-201ENST00000263274 SELENOVP59797 346 aa10.42□□□□□ -0.74
LIG1-201ENST00000263274 MZT1Q08AG7 82 aa10.42□□□□□ -0.74
LIG1-201ENST00000263274 MSMPQ1L6U9 139 aa10.42□□□□□ -0.74
LIG1-201ENST00000263274 RPEL1Q2QD12 228 aa10.42□□□□□ -0.74
LIG1-201ENST00000263274 CT45A1Q5HYN5 189 aa10.42□□□□□ -0.74
LIG1-201ENST00000263274 CT45A3Q8NHU0 189 aa10.42□□□□□ -0.74
LIG1-201ENST00000263274 NABP2Q9BQ15 211 aa10.42□□□□□ -0.74
LIG1-201ENST00000263274 VAMP8Q9BV40 100 aa10.42□□□□□ -0.74
LIG1-201ENST00000263274 SSBP3Q9BWW4 388 aaPredicted RBP10.42□□□□□ -0.74
LIG1-201ENST00000263274 CA1P00915 261 aaPredicted RBP10.41□□□□□ -0.74
LIG1-201ENST00000263274 APELAP0DMC3 54 aa10.41□□□□□ -0.74
LIG1-201ENST00000263274 VDAC2P45880 294 aaPredicted RBP10.41□□□□□ -0.74
LIG1-201ENST00000263274 RPL15P61313 204 aaKnown RBP10.41□□□□□ -0.74
LIG1-201ENST00000263274 CENPWQ5EE01 88 aa10.41□□□□□ -0.74
LIG1-201ENST00000263274 LEMD1Q68G75 181 aa10.41□□□□□ -0.74
LIG1-201ENST00000263274 TRAT1Q6PIZ9 186 aa10.41□□□□□ -0.74
LIG1-201ENST00000263274 FAM216BQ8N7L0 139 aa10.41□□□□□ -0.74
LIG1-201ENST00000263274 Q8N7P7 452 aa10.41□□□□□ -0.74
LIG1-201ENST00000263274 SIGLECL1Q8N7X8 197 aa10.41□□□□□ -0.74
LIG1-201ENST00000263274 PRR7Q8TB68 274 aa10.41□□□□□ -0.74
LIG1-201ENST00000263274 IFI27L2Q9H2X8 130 aa10.41□□□□□ -0.74
LIG1-201ENST00000263274 APC2O95996 2303 aa10.41□□□□□ -0.74
LIG1-201ENST00000263274 PLAUP00749 431 aa10.41□□□□□ -0.74
LIG1-201ENST00000263274 CEACAM8P31997 349 aaPredicted RBP10.41□□□□□ -0.74
LIG1-201ENST00000263274 AMTP48728 403 aa10.41□□□□□ -0.74
LIG1-201ENST00000263274 CCL8P80075 99 aa10.41□□□□□ -0.74
LIG1-201ENST00000263274 COA6Q5JTJ3 125 aaKnown RBP10.41□□□□□ -0.74
LIG1-201ENST00000263274 LHFPL4Q7Z7J7 247 aa10.41□□□□□ -0.74
LIG1-201ENST00000263274 DEFB124Q8NES8 71 aa10.41□□□□□ -0.74
LIG1-201ENST00000263274 SLC35D1Q9NTN3 355 aa10.41□□□□□ -0.74
LIG1-201ENST00000263274 LOC102724200A0A096LPH7 203 aaPredicted RBP10.4□□□□□ -0.74
LIG1-201ENST00000263274 AHRRA9YTQ3 701 aa10.4□□□□□ -0.74
LIG1-201ENST00000263274 SRRM5B3KS81 715 aa10.4□□□□□ -0.74
LIG1-201ENST00000263274 TMPRSS2O15393 492 aa10.4□□□□□ -0.74
LIG1-201ENST00000263274 FOXL1Q12952 345 aa10.4□□□□□ -0.74
LIG1-201ENST00000263274 VWC2Q2TAL6 325 aa10.4□□□□□ -0.74
LIG1-201ENST00000263274 OR5AU1Q8NGC0 362 aa10.4□□□□□ -0.74
LIG1-201ENST00000263274 OR10W1Q8NGF6 305 aa10.4□□□□□ -0.74
LIG1-201ENST00000263274 H1FXQ92522 213 aaKnown RBP10.4□□□□□ -0.74
LIG1-201ENST00000263274 TET2Q6N021 2002 aaPredicted RBP10.4□□□□□ -0.74
LIG1-201ENST00000263274 TRAV17A0A0B4J275 112 aa10.4□□□□□ -0.74
LIG1-201ENST00000263274 K7EN84 100 aa10.4□□□□□ -0.74
LIG1-201ENST00000263274 YPEL1O60688 119 aa10.4□□□□□ -0.74
LIG1-201ENST00000263274 TYMSP04818 313 aa10.4□□□□□ -0.74
LIG1-201ENST00000263274 MMDQ15546 238 aa10.4□□□□□ -0.74
LIG1-201ENST00000263274 RPRMLQ8N4K4 120 aa10.4□□□□□ -0.74
LIG1-201ENST00000263274 EAF1Q96JC9 268 aaPredicted RBP10.4□□□□□ -0.74
LIG1-201ENST00000263274 YPEL2Q96QA6 119 aa10.4□□□□□ -0.74
LIG1-201ENST00000263274 MED13LQ71F56 2210 aa10.4□□□□□ -0.74
LIG1-201ENST00000263274 ZNF883P0CG24 379 aa10.4□□□□□ -0.75
LIG1-201ENST00000263274 Q6ZVH6 145 aa10.4□□□□□ -0.75
LIG1-201ENST00000263274 OR9G1Q8NH87 305 aa10.4□□□□□ -0.75
LIG1-201ENST00000263274 IL36BQ9NZH7 164 aa10.4□□□□□ -0.75
LIG1-201ENST00000263274 DMXL2Q8TDJ6 3036 aa10.39□□□□□ -0.75
LIG1-201ENST00000263274 TNRC6BQ9UPQ9 1833 aaKnown RBP10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms