RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 OOSP1A8MZH6 123 aa10.78□□□□□ -0.68
USP40-201ENST00000251722 SSBP2P81877 361 aaPredicted RBP10.78□□□□□ -0.68
USP40-201ENST00000251722 DLX1P56177 255 aa10.78□□□□□ -0.68
USP40-201ENST00000251722 PRNTQ86SH4 94 aa10.78□□□□□ -0.68
USP40-201ENST00000251722 FLVCR1-AS1Q8TAF5 88 aa10.78□□□□□ -0.68
USP40-201ENST00000251722 GPR146Q96CH1 333 aa10.78□□□□□ -0.68
USP40-201ENST00000251722 C7orf69Q9H7B7 122 aa10.78□□□□□ -0.68
USP40-201ENST00000251722 LRRC75AQ8NAA5 344 aa10.78□□□□□ -0.68
USP40-201ENST00000251722 A0A1W2PP11 408 aa10.77□□□□□ -0.68
USP40-201ENST00000251722 TRGV3P03979 118 aa10.77□□□□□ -0.68
USP40-201ENST00000251722 TMEM177Q53S58 311 aa10.77□□□□□ -0.68
USP40-201ENST00000251722 TAF15Q92804 592 aaKnown RBP eCLIP10.77□□□□□ -0.68
USP40-201ENST00000251722 H7C1H1 209 aa10.77□□□□□ -0.69
USP40-201ENST00000251722 NR2C2APQ86WQ0 139 aa10.77□□□□□ -0.69
USP40-201ENST00000251722 SRP19P09132 144 aaKnown RBP10.77□□□□□ -0.69
USP40-201ENST00000251722 MPZP25189 248 aa10.77□□□□□ -0.69
USP40-201ENST00000251722 SRSF6Q13247 344 aaKnown RBP10.77□□□□□ -0.69
USP40-201ENST00000251722 LY6EQ16553 131 aa10.77□□□□□ -0.69
USP40-201ENST00000251722 FER1L6-AS1Q8NA97 138 aa10.77□□□□□ -0.69
USP40-201ENST00000251722 CELA3AP09093 270 aa10.77□□□□□ -0.69
USP40-201ENST00000251722 FAM53AQ6NSI3 398 aaPredicted RBP10.77□□□□□ -0.69
USP40-201ENST00000251722 CYP2G1PQ6ZSU1 146 aa10.77□□□□□ -0.69
USP40-201ENST00000251722 CACNG8Q8WXS5 425 aa10.77□□□□□ -0.69
USP40-201ENST00000251722 RCC1LQ96I51 464 aaKnown RBP10.77□□□□□ -0.69
USP40-201ENST00000251722 NRN1Q9NPD7 142 aa10.77□□□□□ -0.69
USP40-201ENST00000251722 IGHV3-72A0A0B4J1Y9 119 aa10.76□□□□□ -0.69
USP40-201ENST00000251722 SMAD7O15105 426 aaKnown RBP10.76□□□□□ -0.69
USP40-201ENST00000251722 THY1P04216 161 aa10.76□□□□□ -0.69
USP40-201ENST00000251722 LINC00271P0C7V0 271 aa10.76□□□□□ -0.69
USP40-201ENST00000251722 WNT5AP41221 380 aa10.76□□□□□ -0.69
USP40-201ENST00000251722 SAMD5Q5TGI4 173 aa10.76□□□□□ -0.69
USP40-201ENST00000251722 PPP1R27Q86WC6 154 aa10.76□□□□□ -0.69
USP40-201ENST00000251722 MS4A6AQ9H2W1 248 aa10.76□□□□□ -0.69
USP40-201ENST00000251722 IGKV3-7A0A075B6H7 116 aa10.76□□□□□ -0.69
USP40-201ENST00000251722 RFLNBQ8N5W9 214 aa10.76□□□□□ -0.69
USP40-201ENST00000251722 CD5P06127 495 aa10.75□□□□□ -0.69
USP40-201ENST00000251722 FCGR2BP31994 310 aaPredicted RBP10.75□□□□□ -0.69
USP40-201ENST00000251722 MFAP2P55001 183 aa10.75□□□□□ -0.69
USP40-201ENST00000251722 HCP5Q6MZN7 132 aa10.75□□□□□ -0.69
USP40-201ENST00000251722 FBLN5Q9UBX5 448 aa10.75□□□□□ -0.69
USP40-201ENST00000251722 TGFAP01135 160 aa10.75□□□□□ -0.69
USP40-201ENST00000251722 SPINK2P20155 84 aa10.75□□□□□ -0.69
USP40-201ENST00000251722 ZNF137PP52743 207 aa10.75□□□□□ -0.69
USP40-201ENST00000251722 DRAM1Q8N682 238 aa10.75□□□□□ -0.69
USP40-201ENST00000251722 ARPC1AQ92747 370 aa10.75□□□□□ -0.69
USP40-201ENST00000251722 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP10.75□□□□□ -0.69
USP40-201ENST00000251722 EFNA4P52798 201 aa10.75□□□□□ -0.69
USP40-201ENST00000251722 CD300EQ496F6 205 aaPredicted RBP10.75□□□□□ -0.69
USP40-201ENST00000251722 HTN1P15515 57 aa10.75□□□□□ -0.69
USP40-201ENST00000251722 CA7P43166 264 aa10.75□□□□□ -0.69
USP40-201ENST00000251722 MBNL2Q5VZF2 373 aaKnown RBP10.75□□□□□ -0.69
USP40-201ENST00000251722 FAM90A9PA6NNJ1 464 aa10.75□□□□□ -0.69
USP40-201ENST00000251722 YPEL1O60688 119 aa10.75□□□□□ -0.69
USP40-201ENST00000251722 VDAC2P45880 294 aaPredicted RBP10.75□□□□□ -0.69
USP40-201ENST00000251722 ASPHD2Q6ICH7 369 aa10.75□□□□□ -0.69
USP40-201ENST00000251722 YPEL2Q96QA6 119 aa10.75□□□□□ -0.69
USP40-201ENST00000251722 PAX1P15863 534 aa10.74□□□□□ -0.69
USP40-201ENST00000251722 ZNF324BQ6AW86 544 aaPredicted RBP10.74□□□□□ -0.69
USP40-201ENST00000251722 TRAV8-4A0A0B4J246 113 aa10.74□□□□□ -0.69
USP40-201ENST00000251722 HAX1O00165 279 aa10.74□□□□□ -0.69
USP40-201ENST00000251722 SLC25A16P16260 332 aa10.74□□□□□ -0.69
USP40-201ENST00000251722 CCL1P22362 96 aa10.74□□□□□ -0.69
USP40-201ENST00000251722 ZXDCQ2QGD7 858 aaPredicted RBP10.74□□□□□ -0.69
USP40-201ENST00000251722 GFI1BQ5VTD9 330 aa10.74□□□□□ -0.69
USP40-201ENST00000251722 SPSB4Q96A44 273 aa10.74□□□□□ -0.69
USP40-201ENST00000251722 PSG7Q13046 419 aa10.74□□□□□ -0.69
USP40-201ENST00000251722 TMEM187Q14656 261 aa10.74□□□□□ -0.69
USP40-201ENST00000251722 FAM166AQ6J272 317 aa10.74□□□□□ -0.69
USP40-201ENST00000251722 TGFBR3LH3BV60 316 aa10.74□□□□□ -0.69
USP40-201ENST00000251722 SRSF7Q16629 238 aaKnown RBP eCLIP10.74□□□□□ -0.69
USP40-201ENST00000251722 SLC25A38Q96DW6 304 aa10.74□□□□□ -0.69
USP40-201ENST00000251722 SDF2L1Q9HCN8 221 aa10.74□□□□□ -0.69
USP40-201ENST00000251722 PHLDA3Q9Y5J5 127 aa10.74□□□□□ -0.69
USP40-201ENST00000251722 AZU1P20160 251 aa10.73□□□□□ -0.69
USP40-201ENST00000251722 CX3CL1P78423 397 aa10.73□□□□□ -0.69
USP40-201ENST00000251722 TWIST1Q15672 202 aa10.73□□□□□ -0.69
USP40-201ENST00000251722 CLDND2Q8NHS1 167 aa10.73□□□□□ -0.69
USP40-201ENST00000251722 MGST2Q99735 147 aa10.73□□□□□ -0.69
USP40-201ENST00000251722 FAM181BA6NEQ2 426 aa10.73□□□□□ -0.69
USP40-201ENST00000251722 GAGE12JA6NER3 117 aa10.73□□□□□ -0.69
USP40-201ENST00000251722 A8MWV9 139 aa10.73□□□□□ -0.69
USP40-201ENST00000251722 F8VVB4 439 aa10.73□□□□□ -0.69
USP40-201ENST00000251722 F8VWA3 439 aa10.73□□□□□ -0.69
USP40-201ENST00000251722 GAGE7O76087 117 aa10.73□□□□□ -0.69
USP40-201ENST00000251722 IGHV2-5P01817 119 aa10.73□□□□□ -0.69
USP40-201ENST00000251722 GAGE12FP0CL80 117 aa10.73□□□□□ -0.69
USP40-201ENST00000251722 GAGE12GP0CL81 117 aa10.73□□□□□ -0.69
USP40-201ENST00000251722 GAGE12IP0CL82 117 aa10.73□□□□□ -0.69
USP40-201ENST00000251722 GAGE4Q13068 117 aa10.73□□□□□ -0.69
USP40-201ENST00000251722 UNC119Q13432 240 aa10.73□□□□□ -0.69
USP40-201ENST00000251722 C11orf68Q9H3H3 251 aaKnown RBP10.73□□□□□ -0.69
USP40-201ENST00000251722 ARID1BQ8NFD5 2236 aaPredicted RBP10.73□□□□□ -0.69
USP40-201ENST00000251722 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP10.73□□□□□ -0.69
USP40-201ENST00000251722 PGPA6NDG6 321 aa10.73□□□□□ -0.69
USP40-201ENST00000251722 GPX1P07203 203 aa10.73□□□□□ -0.69
USP40-201ENST00000251722 PLPPR1Q8TBJ4 325 aa10.73□□□□□ -0.69
USP40-201ENST00000251722 RNF5Q99942 180 aa10.73□□□□□ -0.69
USP40-201ENST00000251722 ANOS1P23352 680 aa10.73□□□□□ -0.69
USP40-201ENST00000251722 SS18L2Q9UHA2 77 aa10.73□□□□□ -0.69
USP40-201ENST00000251722 M0R3E3 92 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms