RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 LY96Q9Y6Y9 160 aa13.42□□□□□ -0.26
HOXD3-201ENST00000249440 A0A087X0M5 115 aa13.41□□□□□ -0.26
HOXD3-201ENST00000249440 A0A1B0GX30 115 aa13.41□□□□□ -0.26
HOXD3-201ENST00000249440 AREGP15514 252 aa13.41□□□□□ -0.26
HOXD3-201ENST00000249440 LINC00469Q8N7U9 141 aa13.41□□□□□ -0.26
HOXD3-201ENST00000249440 OR5B3Q8NH48 314 aa13.41□□□□□ -0.26
HOXD3-201ENST00000249440 NABP2Q9BQ15 211 aa13.41□□□□□ -0.26
HOXD3-201ENST00000249440 TMEM167BQ9NRX6 74 aa13.41□□□□□ -0.26
HOXD3-201ENST00000249440 BET1LQ9NYM9 111 aa13.41□□□□□ -0.26
HOXD3-201ENST00000249440 LINC00312Q9Y6C7 94 aa13.41□□□□□ -0.26
HOXD3-201ENST00000249440 TRAV9-1A0A075B6T8 112 aa13.41□□□□□ -0.26
HOXD3-201ENST00000249440 TEX50A0A1B0GTY4 177 aa13.41□□□□□ -0.26
HOXD3-201ENST00000249440 SRRM4A7MD48 611 aaKnown RBP13.41□□□□□ -0.26
HOXD3-201ENST00000249440 NDUFB7P17568 137 aa13.41□□□□□ -0.26
HOXD3-201ENST00000249440 TNFRSF1AP19438 455 aa13.41□□□□□ -0.26
HOXD3-201ENST00000249440 YPEL3P61236 119 aaPredicted RBP13.41□□□□□ -0.26
HOXD3-201ENST00000249440 KRTCAP3Q53RY4 240 aa13.41□□□□□ -0.26
HOXD3-201ENST00000249440 MIR17HGQ75NE6 70 aa13.41□□□□□ -0.26
HOXD3-201ENST00000249440 GBGT1Q8N5D6 347 aa13.41□□□□□ -0.26
HOXD3-201ENST00000249440 GAL3ST2Q9H3Q3 398 aa13.41□□□□□ -0.26
HOXD3-201ENST00000249440 SMG1Q96Q15 3661 aaKnown RBP13.4□□□□□ -0.26
HOXD3-201ENST00000249440 ZNF705GA8MUZ8 300 aaPredicted RBP13.4□□□□□ -0.26
HOXD3-201ENST00000249440 ACTL6BO94805 426 aa13.4□□□□□ -0.26
HOXD3-201ENST00000249440 ZNF90Q03938 601 aa13.4□□□□□ -0.26
HOXD3-201ENST00000249440 C2orf83Q53S99 150 aa13.4□□□□□ -0.26
HOXD3-201ENST00000249440 TMEM108Q6UXF1 575 aa13.4□□□□□ -0.26
HOXD3-201ENST00000249440 REC114Q7Z4M0 266 aa13.4□□□□□ -0.26
HOXD3-201ENST00000249440 MRPL41Q8IXM3 137 aaKnown RBP13.4□□□□□ -0.26
HOXD3-201ENST00000249440 FAM57AQ8TBR7 257 aa13.4□□□□□ -0.26
HOXD3-201ENST00000249440 SLC35E1Q96K37 410 aa13.4□□□□□ -0.26
HOXD3-201ENST00000249440 IL36BQ9NZH7 164 aa13.4□□□□□ -0.26
HOXD3-201ENST00000249440 NKX6-3A6NJ46 265 aa13.4□□□□□ -0.26
HOXD3-201ENST00000249440 PAX1P15863 534 aa13.4□□□□□ -0.26
HOXD3-201ENST00000249440 PSG5Q15238 335 aa13.4□□□□□ -0.26
HOXD3-201ENST00000249440 OSR1Q8TAX0 266 aaPredicted RBP13.4□□□□□ -0.26
HOXD3-201ENST00000249440 SNRNP40Q96DI7 357 aaKnown RBP13.4□□□□□ -0.26
HOXD3-201ENST00000249440 C19orf24Q9BVV8 132 aa13.4□□□□□ -0.26
HOXD3-201ENST00000249440 MKRN2OSH3BPM6 223 aa13.39□□□□□ -0.27
HOXD3-201ENST00000249440 K7EN84 100 aa13.39□□□□□ -0.27
HOXD3-201ENST00000249440 SAA1P0DJI8 122 aaPredicted RBP13.39□□□□□ -0.27
HOXD3-201ENST00000249440 CCL8P80075 99 aa13.39□□□□□ -0.27
HOXD3-201ENST00000249440 ZNF833PQ6ZTB9 187 aa13.39□□□□□ -0.27
HOXD3-201ENST00000249440 RBMXL3Q8N7X1 1067 aaKnown RBP13.39□□□□□ -0.27
HOXD3-201ENST00000249440 OR1L8Q8NGR8 309 aa13.39□□□□□ -0.27
HOXD3-201ENST00000249440 EAF1Q96JC9 268 aaPredicted RBP13.39□□□□□ -0.27
HOXD3-201ENST00000249440 NOL4LQ96MY1 436 aaPredicted RBP13.39□□□□□ -0.27
HOXD3-201ENST00000249440 TECRQ9NZ01 308 aaKnown RBP13.39□□□□□ -0.27
HOXD3-201ENST00000249440 OR4A8P0C604 315 aa13.39□□□□□ -0.27
HOXD3-201ENST00000249440 MEF2CQ06413 473 aaPredicted RBP13.39□□□□□ -0.27
HOXD3-201ENST00000249440 PQLC2Q6ZP29 291 aa13.39□□□□□ -0.27
HOXD3-201ENST00000249440 DCAF16Q9NXF7 216 aa13.39□□□□□ -0.27
HOXD3-201ENST00000249440 IGKV1OR2-108A0A075B7D4 117 aa13.38□□□□□ -0.27
HOXD3-201ENST00000249440 APOA2P02652 100 aa13.38□□□□□ -0.27
HOXD3-201ENST00000249440 ZNF664Q8N3J9 261 aa13.38□□□□□ -0.27
HOXD3-201ENST00000249440 RND1Q92730 232 aa13.38□□□□□ -0.27
HOXD3-201ENST00000249440 FAM122AQ96E09 287 aa13.38□□□□□ -0.27
HOXD3-201ENST00000249440 ZNRD1Q9P1U0 126 aa13.38□□□□□ -0.27
HOXD3-201ENST00000249440 HELTA6NFD8 242 aa13.38□□□□□ -0.27
HOXD3-201ENST00000249440 TAS2R45P59539 299 aa13.38□□□□□ -0.27
HOXD3-201ENST00000249440 IQCJQ1A5X6 159 aa13.38□□□□□ -0.27
HOXD3-201ENST00000249440 MOB3BQ86TA1 216 aa13.38□□□□□ -0.27
HOXD3-201ENST00000249440 PNKDQ8N490 385 aa13.38□□□□□ -0.27
HOXD3-201ENST00000249440 COMMD5Q9GZQ3 224 aa13.38□□□□□ -0.27
HOXD3-201ENST00000249440 RNASE2P10153 161 aaKnown RBP13.37□□□□□ -0.27
HOXD3-201ENST00000249440 OR10J1P30954 320 aa13.37□□□□□ -0.27
HOXD3-201ENST00000249440 ADMP35318 185 aa13.37□□□□□ -0.27
HOXD3-201ENST00000249440 HLA-DRB5Q30154 266 aa13.37□□□□□ -0.27
HOXD3-201ENST00000249440 C17orf100A8MU93 164 aa13.36□□□□□ -0.27
HOXD3-201ENST00000249440 A8MWP6 167 aa13.36□□□□□ -0.27
HOXD3-201ENST00000249440 SLC17A3O00476 420 aa13.36□□□□□ -0.27
HOXD3-201ENST00000249440 OR7C2O60412 319 aa13.36□□□□□ -0.27
HOXD3-201ENST00000249440 GNG4P50150 75 aa13.36□□□□□ -0.27
HOXD3-201ENST00000249440 ERVFC1-1P60608 527 aa13.36□□□□□ -0.27
HOXD3-201ENST00000249440 CD69Q07108 199 aa13.36□□□□□ -0.27
HOXD3-201ENST00000249440 HARBI1Q96MB7 349 aa13.36□□□□□ -0.27
HOXD3-201ENST00000249440 ZNF714Q96N38 554 aa13.36□□□□□ -0.27
HOXD3-201ENST00000249440 K7EM74 188 aa13.36□□□□□ -0.27
HOXD3-201ENST00000249440 GATA2P23769 480 aaPredicted RBP13.36□□□□□ -0.27
HOXD3-201ENST00000249440 COL8A2P25067 703 aa13.36□□□□□ -0.27
HOXD3-201ENST00000249440 ERHP84090 104 aaKnown RBP13.36□□□□□ -0.27
HOXD3-201ENST00000249440 RPEL1Q2QD12 228 aa13.36□□□□□ -0.27
HOXD3-201ENST00000249440 CACNG8Q8WXS5 425 aa13.36□□□□□ -0.27
HOXD3-201ENST00000249440 MRPL20Q9BYC9 149 aaKnown RBP13.36□□□□□ -0.27
HOXD3-201ENST00000249440 MAP1BP46821 2468 aaKnown RBP13.36□□□□□ -0.27
HOXD3-201ENST00000249440 CACNA1AO00555 2505 aa13.36□□□□□ -0.27
HOXD3-201ENST00000249440 C16orf97H3BN30 126 aa13.35□□□□□ -0.27
HOXD3-201ENST00000249440 OR5G3P0C626 314 aa13.35□□□□□ -0.27
HOXD3-201ENST00000249440 CRYBB3P26998 211 aa13.35□□□□□ -0.27
HOXD3-201ENST00000249440 SELENOTP62341 195 aa13.35□□□□□ -0.27
HOXD3-201ENST00000249440 UNQ6494/PRO21346Q6UXR6 183 aa13.35□□□□□ -0.27
HOXD3-201ENST00000249440 TMEM256Q8N2U0 113 aa13.35□□□□□ -0.27
HOXD3-201ENST00000249440 OR10W1Q8NGF6 305 aa13.35□□□□□ -0.27
HOXD3-201ENST00000249440 OR5AN1Q8NGI8 311 aa13.35□□□□□ -0.27
HOXD3-201ENST00000249440 NDUFA4L2Q9NRX3 87 aa13.35□□□□□ -0.27
HOXD3-201ENST00000249440 H0YJW9 148 aa13.35□□□□□ -0.27
HOXD3-201ENST00000249440 RPL8P62917 257 aaKnown RBP13.35□□□□□ -0.27
HOXD3-201ENST00000249440 ADIPOQQ15848 244 aa13.35□□□□□ -0.27
HOXD3-201ENST00000249440 MLANAQ16655 118 aa13.35□□□□□ -0.27
HOXD3-201ENST00000249440 CENPWQ5EE01 88 aa13.35□□□□□ -0.27
HOXD3-201ENST00000249440 FLYWCH2Q96CP2 140 aaKnown RBP13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms