RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 SRIP30626 198 aa10.15□□□□□ -0.78
NUP88-201ENST00000225696 Q6ZVH6 145 aa10.15□□□□□ -0.78
NUP88-201ENST00000225696 NIT1Q86X76 327 aa10.15□□□□□ -0.78
NUP88-201ENST00000225696 GCSAMQ8N6F7 178 aa10.15□□□□□ -0.78
NUP88-201ENST00000225696 STPG4Q8N801 248 aa10.15□□□□□ -0.78
NUP88-201ENST00000225696 NABP2Q9BQ15 211 aa10.15□□□□□ -0.78
NUP88-201ENST00000225696 IDI2-AS1Q9NZ38 188 aa10.15□□□□□ -0.78
NUP88-201ENST00000225696 CLCF1Q9UBD9 225 aa10.15□□□□□ -0.78
NUP88-201ENST00000225696 PLCE1Q9P212 2302 aa10.15□□□□□ -0.78
NUP88-201ENST00000225696 ADGRG4Q8IZF6 3080 aa10.15□□□□□ -0.78
NUP88-201ENST00000225696 ZNF253O75346 499 aa10.15□□□□□ -0.79
NUP88-201ENST00000225696 CD46P15529 392 aa10.15□□□□□ -0.79
NUP88-201ENST00000225696 KIR2DL2P43627 348 aaPredicted RBP10.15□□□□□ -0.79
NUP88-201ENST00000225696 HSPE1P61604 102 aaKnown RBP10.15□□□□□ -0.79
NUP88-201ENST00000225696 SUMO1P63165 101 aaKnown RBP10.15□□□□□ -0.79
NUP88-201ENST00000225696 SPATA45Q537H7 98 aa10.15□□□□□ -0.79
NUP88-201ENST00000225696 C1orf174Q8IYL3 243 aa10.15□□□□□ -0.79
NUP88-201ENST00000225696 NEUROG1Q92886 237 aa10.15□□□□□ -0.79
NUP88-201ENST00000225696 SSBP3Q9BWW4 388 aaPredicted RBP10.15□□□□□ -0.79
NUP88-201ENST00000225696 SLC45A2Q9UMX9 530 aa10.15□□□□□ -0.79
NUP88-201ENST00000225696 LY96Q9Y6Y9 160 aa10.15□□□□□ -0.79
NUP88-201ENST00000225696 MGAQ8IWI9 3026 aa10.15□□□□□ -0.79
NUP88-201ENST00000225696 TRAV5A0A0B4J249 113 aa10.14□□□□□ -0.79
NUP88-201ENST00000225696 SRRM4A7MD48 611 aaKnown RBP10.14□□□□□ -0.79
NUP88-201ENST00000225696 C21orf140B9A014 251 aa10.14□□□□□ -0.79
NUP88-201ENST00000225696 F2RL2O00254 374 aa10.14□□□□□ -0.79
NUP88-201ENST00000225696 OR7C2O60412 319 aa10.14□□□□□ -0.79
NUP88-201ENST00000225696 IGKV1-16P04430 117 aa10.14□□□□□ -0.79
NUP88-201ENST00000225696 C3orf79P0CE67 100 aa10.14□□□□□ -0.79
NUP88-201ENST00000225696 MGST1P10620 155 aaKnown RBP10.14□□□□□ -0.79
NUP88-201ENST00000225696 GAGE1Q13065 139 aa10.14□□□□□ -0.79
NUP88-201ENST00000225696 SLAQ13239 276 aa10.14□□□□□ -0.79
NUP88-201ENST00000225696 C17orf58Q2M2W7 97 aa10.14□□□□□ -0.79
NUP88-201ENST00000225696 LCN12Q6JVE5 192 aa10.14□□□□□ -0.79
NUP88-201ENST00000225696 OR9G1Q8NH87 305 aa10.14□□□□□ -0.79
NUP88-201ENST00000225696 GCM1Q9NP62 436 aa10.14□□□□□ -0.79
NUP88-201ENST00000225696 CALYQ9NYX4 217 aa10.14□□□□□ -0.79
NUP88-201ENST00000225696 CDC42EP3Q9UKI2 254 aa10.14□□□□□ -0.79
NUP88-201ENST00000225696 NAV3Q8IVL0 2385 aa10.14□□□□□ -0.79
NUP88-201ENST00000225696 YLPM1P49750 1951 aaKnown RBP10.14□□□□□ -0.79
NUP88-201ENST00000225696 TRAV34A0A0B4J273 112 aa10.14□□□□□ -0.79
NUP88-201ENST00000225696 IGHV2OR16-5A0A0B4J2B6 119 aa10.14□□□□□ -0.79
NUP88-201ENST00000225696 IGHV1-18A0A0C4DH31 117 aa10.14□□□□□ -0.79
NUP88-201ENST00000225696 SRRM5B3KS81 715 aa10.14□□□□□ -0.79
NUP88-201ENST00000225696 NDUFB8O95169 186 aa10.14□□□□□ -0.79
NUP88-201ENST00000225696 C9orf106Q8NAJ2 232 aa10.14□□□□□ -0.79
NUP88-201ENST00000225696 OR4S2Q8NH73 311 aa10.14□□□□□ -0.79
NUP88-201ENST00000225696 KCNS1Q96KK3 526 aa10.14□□□□□ -0.79
NUP88-201ENST00000225696 RNF2Q99496 336 aa10.14□□□□□ -0.79
NUP88-201ENST00000225696 ZNF586Q9NXT0 402 aa10.14□□□□□ -0.79
NUP88-201ENST00000225696 IL19Q9UHD0 177 aa10.14□□□□□ -0.79
NUP88-201ENST00000225696 FOXA2Q9Y261 457 aaPredicted RBP10.14□□□□□ -0.79
NUP88-201ENST00000225696 CACNA1GO43497 2377 aa10.13□□□□□ -0.79
NUP88-201ENST00000225696 MGST3O14880 152 aa10.13□□□□□ -0.79
NUP88-201ENST00000225696 HYPMO75409 117 aa10.13□□□□□ -0.79
NUP88-201ENST00000225696 MMP23AO75900 390 aa10.13□□□□□ -0.79
NUP88-201ENST00000225696 RAB7AP51149 207 aa10.13□□□□□ -0.79
NUP88-201ENST00000225696 GUSBP1Q15486 140 aa10.13□□□□□ -0.79
NUP88-201ENST00000225696 SERTAD4Q9NUC0 356 aa10.13□□□□□ -0.79
NUP88-201ENST00000225696 OR51B2Q9Y5P1 312 aa10.13□□□□□ -0.79
NUP88-201ENST00000225696 ROS1P08922 2347 aa10.13□□□□□ -0.79
NUP88-201ENST00000225696 DSCAML1Q8TD84 2053 aa10.13□□□□□ -0.79
NUP88-201ENST00000225696 MT-CO2P00403 227 aa10.12□□□□□ -0.79
NUP88-201ENST00000225696 CGB3P0DN86 165 aa10.12□□□□□ -0.79
NUP88-201ENST00000225696 CGB7P0DN87 165 aa10.12□□□□□ -0.79
NUP88-201ENST00000225696 NTF3P20783 257 aa10.12□□□□□ -0.79
NUP88-201ENST00000225696 GNG10P50151 68 aa10.12□□□□□ -0.79
NUP88-201ENST00000225696 RAB31Q13636 194 aa10.12□□□□□ -0.79
NUP88-201ENST00000225696 C21orf62-AS1Q17RA5 79 aa10.12□□□□□ -0.79
NUP88-201ENST00000225696 CR1LQ2VPA4 569 aa10.12□□□□□ -0.79
NUP88-201ENST00000225696 GDF5OSQ5U4N7 250 aa10.12□□□□□ -0.79
NUP88-201ENST00000225696 TRAT1Q6PIZ9 186 aa10.12□□□□□ -0.79
NUP88-201ENST00000225696 MRPL52Q86TS9 123 aaKnown RBP10.12□□□□□ -0.79
NUP88-201ENST00000225696 MOGAT3Q86VF5 341 aa10.12□□□□□ -0.79
NUP88-201ENST00000225696 LYG1Q8N1E2 194 aa10.12□□□□□ -0.79
NUP88-201ENST00000225696 OR10W1Q8NGF6 305 aa10.12□□□□□ -0.79
NUP88-201ENST00000225696 TSKUQ8WUA8 353 aa10.12□□□□□ -0.79
NUP88-201ENST00000225696 SNRNP40Q96DI7 357 aaKnown RBP10.12□□□□□ -0.79
NUP88-201ENST00000225696 STARD4Q96DR4 205 aa10.12□□□□□ -0.79
NUP88-201ENST00000225696 IGF2BP2-AS1Q96M15 143 aa10.12□□□□□ -0.79
NUP88-201ENST00000225696 ARRDC1-AS1Q9H2J1 176 aa10.12□□□□□ -0.79
NUP88-201ENST00000225696 MAP1BP46821 2468 aaKnown RBP10.12□□□□□ -0.79
NUP88-201ENST00000225696 TACC2O95359 2948 aa10.12□□□□□ -0.79
NUP88-201ENST00000225696 BDP1A6H8Y1 2624 aa10.12□□□□□ -0.79
NUP88-201ENST00000225696 TRBV9A0A0B4J1U6 114 aa10.12□□□□□ -0.79
NUP88-201ENST00000225696 LNP1A1A4G5 178 aa10.12□□□□□ -0.79
NUP88-201ENST00000225696 ZNF324O75467 553 aaPredicted RBP10.12□□□□□ -0.79
NUP88-201ENST00000225696 IGLC2P0DOY2 106 aa10.12□□□□□ -0.79
NUP88-201ENST00000225696 IGLC3P0DOY3 106 aa10.12□□□□□ -0.79
NUP88-201ENST00000225696 SFTPCP11686 197 aa10.12□□□□□ -0.79
NUP88-201ENST00000225696 CHRNB4P30926 498 aa10.12□□□□□ -0.79
NUP88-201ENST00000225696 SSBP2P81877 361 aaPredicted RBP10.12□□□□□ -0.79
NUP88-201ENST00000225696 IBA57Q5T440 356 aaKnown RBP10.12□□□□□ -0.79
NUP88-201ENST00000225696 C11orf42Q8N5U0 333 aa10.12□□□□□ -0.79
NUP88-201ENST00000225696 OR4B1Q8NGF8 309 aa10.12□□□□□ -0.79
NUP88-201ENST00000225696 PLXNB1O43157 2135 aa10.12□□□□□ -0.79
NUP88-201ENST00000225696 SMIM27A0A1W2PRY6 76 aa10.11□□□□□ -0.79
NUP88-201ENST00000225696 J3QR06 171 aa10.11□□□□□ -0.79
NUP88-201ENST00000225696 HOXC12P31275 282 aa10.11□□□□□ -0.79
NUP88-201ENST00000225696 SRSF6Q13247 344 aaKnown RBP10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 77.7 ms