RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 TMEM17Q86X19 198 aa12.14□□□□□ -0.47
CLN3-264ENST00000637985 WDR89Q96FK6 387 aaPredicted RBP12.14□□□□□ -0.47
CLN3-264ENST00000637985 CMTM3Q96MX0 182 aa12.14□□□□□ -0.47
CLN3-264ENST00000637985 PLEKHA2Q9HB19 425 aa12.14□□□□□ -0.47
CLN3-264ENST00000637985 HRASLSQ9HDD0 168 aa12.14□□□□□ -0.47
CLN3-264ENST00000637985 PLA2G2EQ9NZK7 142 aa12.14□□□□□ -0.47
CLN3-264ENST00000637985 FBXL7Q9UJT9 491 aa12.14□□□□□ -0.47
CLN3-264ENST00000637985 A0A1B0GW64 132 aa12.13□□□□□ -0.47
CLN3-264ENST00000637985 CTRB1P17538 263 aa12.13□□□□□ -0.47
CLN3-264ENST00000637985 CTRB2Q6GPI1 263 aa12.13□□□□□ -0.47
CLN3-264ENST00000637985 TMEM217Q8N7C4 229 aa12.13□□□□□ -0.47
CLN3-264ENST00000637985 OR51H1Q8NH63 302 aa12.13□□□□□ -0.47
CLN3-264ENST00000637985 DYNLRB2Q8TF09 96 aa12.13□□□□□ -0.47
CLN3-264ENST00000637985 MOB3AQ96BX8 217 aa12.13□□□□□ -0.47
CLN3-264ENST00000637985 FANCD2OSQ96PS1 177 aa12.13□□□□□ -0.47
CLN3-264ENST00000637985 SRSF8Q9BRL6 282 aaKnown RBP12.13□□□□□ -0.47
CLN3-264ENST00000637985 ZNF2Q9BSG1 426 aaPredicted RBP12.13□□□□□ -0.47
CLN3-264ENST00000637985 COMMD9Q9P000 198 aa12.13□□□□□ -0.47
CLN3-264ENST00000637985 DMRT1Q9Y5R6 373 aa12.13□□□□□ -0.47
CLN3-264ENST00000637985 UPK2O00526 184 aa12.12□□□□□ -0.47
CLN3-264ENST00000637985 GGCTO75223 188 aaKnown RBP12.12□□□□□ -0.47
CLN3-264ENST00000637985 PMP2P02689 132 aa12.12□□□□□ -0.47
CLN3-264ENST00000637985 AREGP15514 252 aa12.12□□□□□ -0.47
CLN3-264ENST00000637985 RFX2P48378 723 aa12.12□□□□□ -0.47
CLN3-264ENST00000637985 AADACL3Q5VUY0 350 aa12.12□□□□□ -0.47
CLN3-264ENST00000637985 OR5H2Q8NGV7 314 aa12.12□□□□□ -0.47
CLN3-264ENST00000637985 FUNDC2Q9BWH2 189 aa12.12□□□□□ -0.47
CLN3-264ENST00000637985 SMIM31A0A1B0GVY4 71 aa12.11□□□□□ -0.47
CLN3-264ENST00000637985 CGB1A6NKQ9 187 aa12.11□□□□□ -0.47
CLN3-264ENST00000637985 APOA1P02647 267 aa12.11□□□□□ -0.47
CLN3-264ENST00000637985 OR2B8PP59922 312 aa12.11□□□□□ -0.47
CLN3-264ENST00000637985 GPHB5Q86YW7 130 aa12.11□□□□□ -0.47
CLN3-264ENST00000637985 CMTM1Q8IZ96 169 aa12.11□□□□□ -0.47
CLN3-264ENST00000637985 DMBX1Q8NFW5 382 aa12.11□□□□□ -0.47
CLN3-264ENST00000637985 OR6F1Q8NGZ6 308 aa12.11□□□□□ -0.47
CLN3-264ENST00000637985 EEF1AKMT3Q96AZ1 226 aa12.11□□□□□ -0.47
CLN3-264ENST00000637985 COMMD5Q9GZQ3 224 aa12.11□□□□□ -0.47
CLN3-264ENST00000637985 TMEM140Q9NV12 185 aa12.11□□□□□ -0.47
CLN3-264ENST00000637985 TECRQ9NZ01 308 aaKnown RBP12.11□□□□□ -0.47
CLN3-264ENST00000637985 PPP5D1E7EU14 171 aa12.1□□□□□ -0.47
CLN3-264ENST00000637985 LGALS9O00182 355 aa12.1□□□□□ -0.47
CLN3-264ENST00000637985 PGLYRP1O75594 196 aaPredicted RBP12.1□□□□□ -0.47
CLN3-264ENST00000637985 S1PR2O95136 353 aa12.1□□□□□ -0.47
CLN3-264ENST00000637985 EIF4EP06730 217 aaKnown RBP12.1□□□□□ -0.47
CLN3-264ENST00000637985 DEFA4P12838 97 aa12.1□□□□□ -0.47
CLN3-264ENST00000637985 FOLR2P14207 255 aa12.1□□□□□ -0.47
CLN3-264ENST00000637985 MYOD1P15172 320 aa12.1□□□□□ -0.47
CLN3-264ENST00000637985 F2RP25116 425 aa12.1□□□□□ -0.47
CLN3-264ENST00000637985 TCTAP57738 103 aa12.1□□□□□ -0.47
CLN3-264ENST00000637985 NCS1P62166 190 aa12.1□□□□□ -0.47
CLN3-264ENST00000637985 DEFB135Q30KP9 77 aa12.1□□□□□ -0.47
CLN3-264ENST00000637985 THOC7Q6I9Y2 204 aaKnown RBP12.1□□□□□ -0.47
CLN3-264ENST00000637985 C19orf35Q6ZS72 473 aa12.1□□□□□ -0.47
CLN3-264ENST00000637985 LYSMD2Q8IV50 215 aa12.1□□□□□ -0.47
CLN3-264ENST00000637985 CADM3Q8N126 398 aa12.1□□□□□ -0.47
CLN3-264ENST00000637985 GPX8Q8TED1 209 aa12.1□□□□□ -0.47
CLN3-264ENST00000637985 CXorf58Q96LI9 332 aa12.1□□□□□ -0.47
CLN3-264ENST00000637985 SCPEP1Q9HB40 452 aa12.1□□□□□ -0.47
CLN3-264ENST00000637985 COMMD3Q9UBI1 195 aa12.1□□□□□ -0.47
CLN3-264ENST00000637985 IGLV11-55A0A075B6I3 123 aa12.09□□□□□ -0.47
CLN3-264ENST00000637985 TRBV7-1A0A0A6YYK4 115 aa12.09□□□□□ -0.47
CLN3-264ENST00000637985 TRAV3A0A0B4J244 114 aa12.09□□□□□ -0.47
CLN3-264ENST00000637985 C2orf70A6NJV1 201 aa12.09□□□□□ -0.47
CLN3-264ENST00000637985 GPR31O00270 319 aa12.09□□□□□ -0.47
CLN3-264ENST00000637985 EDN2P20800 178 aa12.09□□□□□ -0.47
CLN3-264ENST00000637985 HRH1P35367 487 aa12.09□□□□□ -0.47
CLN3-264ENST00000637985 ARL3P36405 182 aa12.09□□□□□ -0.47
CLN3-264ENST00000637985 ERVK-16P61578 105 aa12.09□□□□□ -0.47
CLN3-264ENST00000637985 VBP1P61758 197 aa12.09□□□□□ -0.47
CLN3-264ENST00000637985 LPCAT3Q6P1A2 487 aa12.09□□□□□ -0.47
CLN3-264ENST00000637985 HSD17B13Q7Z5P4 300 aaPredicted RBP12.09□□□□□ -0.47
CLN3-264ENST00000637985 CCDC140Q96MF4 163 aa12.09□□□□□ -0.47
CLN3-264ENST00000637985 QTRT1Q9BXR0 403 aaKnown RBP12.09□□□□□ -0.47
CLN3-264ENST00000637985 THYN1Q9P016 225 aa12.09□□□□□ -0.47
CLN3-264ENST00000637985 IGLC7A0M8Q6 106 aa12.08□□□□□ -0.48
CLN3-264ENST00000637985 PRSS29PA6NIE9 313 aa12.08□□□□□ -0.48
CLN3-264ENST00000637985 MARCH11A6NNE9 402 aa12.08□□□□□ -0.48
CLN3-264ENST00000637985 CYB5BO43169 146 aa12.08□□□□□ -0.48
CLN3-264ENST00000637985 OR2C1O95371 312 aa12.08□□□□□ -0.48
CLN3-264ENST00000637985 IGHV3-23P01764 117 aa12.08□□□□□ -0.48
CLN3-264ENST00000637985 RLN1P04808 185 aa12.08□□□□□ -0.48
CLN3-264ENST00000637985 REG1AP05451 166 aa12.08□□□□□ -0.48
CLN3-264ENST00000637985 HLA-DMAP28067 261 aa12.08□□□□□ -0.48
CLN3-264ENST00000637985 RORCP51449 518 aa12.08□□□□□ -0.48
CLN3-264ENST00000637985 APOC4P55056 127 aa12.08□□□□□ -0.48
CLN3-264ENST00000637985 FAM106AQ4KMX7 169 aa12.08□□□□□ -0.48
CLN3-264ENST00000637985 CLEC19AQ6UXS0 136 aa12.08□□□□□ -0.48
CLN3-264ENST00000637985 OR52B4Q8NGK2 314 aa12.08□□□□□ -0.48
CLN3-264ENST00000637985 RNF183Q96D59 192 aa12.08□□□□□ -0.48
CLN3-264ENST00000637985 DGCR14Q96DF8 476 aaKnown RBP12.08□□□□□ -0.48
CLN3-264ENST00000637985 FXYD6Q9H0Q3 95 aa12.08□□□□□ -0.48
CLN3-264ENST00000637985 UBE2CO00762 179 aa12.07□□□□□ -0.48
CLN3-264ENST00000637985 HLA-AP01891 365 aaKnown RBP12.07□□□□□ -0.48
CLN3-264ENST00000637985 TRAPPC2P0DI81 140 aa12.07□□□□□ -0.48
CLN3-264ENST00000637985 TRAPPC2BP0DI82 140 aa12.07□□□□□ -0.48
CLN3-264ENST00000637985 S100GP29377 79 aa12.07□□□□□ -0.48
CLN3-264ENST00000637985 TSPAN5P62079 268 aa12.07□□□□□ -0.48
CLN3-264ENST00000637985 TMEM61Q8N0U2 210 aa12.07□□□□□ -0.48
CLN3-264ENST00000637985 FAM212BQ9NTI7 297 aaPredicted RBP12.07□□□□□ -0.48
CLN3-264ENST00000637985 TEX50A0A1B0GTY4 177 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms