RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 OR5H6Q8NGV6 325 aa14.33□□□□□ -0.12
CLN3-262ENST00000637699 TMEM190Q8WZ59 177 aa14.33□□□□□ -0.12
CLN3-262ENST00000637699 CCL28Q9NRJ3 127 aa14.33□□□□□ -0.12
CLN3-262ENST00000637699 THYN1Q9P016 225 aa14.33□□□□□ -0.12
CLN3-262ENST00000637699 ANXA10Q9UJ72 324 aa14.33□□□□□ -0.12
CLN3-262ENST00000637699 OR2T8A6NH00 312 aa14.32□□□□□ -0.12
CLN3-262ENST00000637699 GNG2P59768 71 aa14.32□□□□□ -0.12
CLN3-262ENST00000637699 OR10W1Q8NGF6 305 aa14.32□□□□□ -0.12
CLN3-262ENST00000637699 SECTM1Q8WVN6 248 aa14.32□□□□□ -0.12
CLN3-262ENST00000637699 GALNT14Q96FL9 552 aa14.32□□□□□ -0.12
CLN3-262ENST00000637699 AIFM2Q9BRQ8 373 aa14.32□□□□□ -0.12
CLN3-262ENST00000637699 C20orf24Q9BUV8 137 aa14.32□□□□□ -0.12
CLN3-262ENST00000637699 MAP6D1Q9H9H5 199 aa14.32□□□□□ -0.12
CLN3-262ENST00000637699 DAZ1Q9NQZ3 744 aaKnown RBP14.32□□□□□ -0.12
CLN3-262ENST00000637699 RHBDL2Q9NX52 303 aa14.32□□□□□ -0.12
CLN3-262ENST00000637699 IGHV3OR16-8A0A075B7F1 116 aa14.31□□□□□ -0.12
CLN3-262ENST00000637699 OR4C46A6NHA9 309 aa14.31□□□□□ -0.12
CLN3-262ENST00000637699 SSX5O60225 188 aa14.31□□□□□ -0.12
CLN3-262ENST00000637699 TGFBR1P36897 503 aa14.31□□□□□ -0.12
CLN3-262ENST00000637699 IDNKQ5T6J7 187 aa14.31□□□□□ -0.12
CLN3-262ENST00000637699 APRG1Q8IVJ8 170 aa14.31□□□□□ -0.12
CLN3-262ENST00000637699 VN1R17PQ8TDU5 208 aa14.31□□□□□ -0.12
CLN3-262ENST00000637699 SLC25A38Q96DW6 304 aa14.31□□□□□ -0.12
CLN3-262ENST00000637699 COMMD5Q9GZQ3 224 aa14.31□□□□□ -0.12
CLN3-262ENST00000637699 SULT1C2O00338 296 aa14.3□□□□□ -0.12
CLN3-262ENST00000637699 UPK2O00526 184 aa14.3□□□□□ -0.12
CLN3-262ENST00000637699 ZNF207O43670 478 aaKnown RBP14.3□□□□□ -0.12
CLN3-262ENST00000637699 PTHLHP12272 177 aa14.3□□□□□ -0.12
CLN3-262ENST00000637699 SLC25A24Q6NUK1 477 aa14.3□□□□□ -0.12
CLN3-262ENST00000637699 IGHV3-21A0A0B4J1V1 117 aa14.29□□□□□ -0.12
CLN3-262ENST00000637699 CTSDP07339 412 aaPredicted RBP14.29□□□□□ -0.12
CLN3-262ENST00000637699 FCGR2CP31995 323 aa14.29□□□□□ -0.12
CLN3-262ENST00000637699 TAS2R31P59538 309 aa14.29□□□□□ -0.12
CLN3-262ENST00000637699 NANOS2P60321 138 aaKnown RBP14.29□□□□□ -0.12
CLN3-262ENST00000637699 TSPAN14Q8NG11 270 aa14.29□□□□□ -0.12
CLN3-262ENST00000637699 OR13F1Q8NGS4 319 aa14.29□□□□□ -0.12
CLN3-262ENST00000637699 YIPF6Q96EC8 236 aa14.29□□□□□ -0.12
CLN3-262ENST00000637699 SRSF8Q9BRL6 282 aaKnown RBP14.29□□□□□ -0.12
CLN3-262ENST00000637699 CHRDL1Q9BU40 450 aa14.29□□□□□ -0.12
CLN3-262ENST00000637699 QTRT1Q9BXR0 403 aaKnown RBP14.29□□□□□ -0.12
CLN3-262ENST00000637699 FBXL17Q9UF56 701 aa14.29□□□□□ -0.12
CLN3-262ENST00000637699 DNAH6Q9C0G6 4158 aa14.29□□□□□ -0.12
CLN3-262ENST00000637699 TRAV18A0A075B6X5 111 aa14.28□□□□□ -0.12
CLN3-262ENST00000637699 NDUFA4O00483 81 aa14.28□□□□□ -0.12
CLN3-262ENST00000637699 CYB5BO43169 146 aa14.28□□□□□ -0.12
CLN3-262ENST00000637699 SCGNO76038 276 aa14.28□□□□□ -0.12
CLN3-262ENST00000637699 OR13C7P0DN81 318 aa14.28□□□□□ -0.12
CLN3-262ENST00000637699 NQO2P16083 231 aa14.28□□□□□ -0.12
CLN3-262ENST00000637699 SCAND1P57086 179 aa14.28□□□□□ -0.12
CLN3-262ENST00000637699 ARPC4P59998 168 aa14.28□□□□□ -0.12
CLN3-262ENST00000637699 ZNF124Q15973 351 aa14.28□□□□□ -0.12
CLN3-262ENST00000637699 GDPD1Q8N9F7 314 aa14.28□□□□□ -0.12
CLN3-262ENST00000637699 DMBX1Q8NFW5 382 aa14.28□□□□□ -0.12
CLN3-262ENST00000637699 CD300LFQ8TDQ1 290 aa14.28□□□□□ -0.12
CLN3-262ENST00000637699 BSCL2Q96G97 398 aaPredicted RBP14.28□□□□□ -0.12
CLN3-262ENST00000637699 RARRES2Q99969 163 aa14.28□□□□□ -0.12
CLN3-262ENST00000637699 C6orf62Q9GZU0 229 aaPredicted RBP14.28□□□□□ -0.12
CLN3-262ENST00000637699 CSTL1Q9H114 145 aa14.28□□□□□ -0.12
CLN3-262ENST00000637699 TMEM140Q9NV12 185 aa14.28□□□□□ -0.12
CLN3-262ENST00000637699 ETV7Q9Y603 341 aa14.28□□□□□ -0.12
CLN3-262ENST00000637699 A0A087WXM4 84 aa14.27□□□□□ -0.13
CLN3-262ENST00000637699 RBFOX2O43251 390 aaKnown RBP eCLIP14.27□□□□□ -0.13
CLN3-262ENST00000637699 HPRT1P00492 218 aa14.27□□□□□ -0.13
CLN3-262ENST00000637699 IFNA4P05014 189 aa14.27□□□□□ -0.13
CLN3-262ENST00000637699 SERPINE2P07093 398 aa14.27□□□□□ -0.13
CLN3-262ENST00000637699 TRAPPC2P0DI81 140 aa14.27□□□□□ -0.13
CLN3-262ENST00000637699 TRAPPC2BP0DI82 140 aa14.27□□□□□ -0.13
CLN3-262ENST00000637699 PRR20EP86478 221 aa14.27□□□□□ -0.13
CLN3-262ENST00000637699 PRR20CP86479 221 aa14.27□□□□□ -0.13
CLN3-262ENST00000637699 PRR20DP86480 221 aa14.27□□□□□ -0.13
CLN3-262ENST00000637699 PRR20BP86481 221 aa14.27□□□□□ -0.13
CLN3-262ENST00000637699 PRR20AP86496 221 aa14.27□□□□□ -0.13
CLN3-262ENST00000637699 RBMS2Q15434 407 aaKnown RBP14.27□□□□□ -0.13
CLN3-262ENST00000637699 SPSB3Q6PJ21 355 aa14.27□□□□□ -0.13
CLN3-262ENST00000637699 UBAC2Q8NBM4 344 aa14.27□□□□□ -0.13
CLN3-262ENST00000637699 C11orf45Q8TAV5 145 aa14.27□□□□□ -0.13
CLN3-262ENST00000637699 SLC5A7Q9GZV3 580 aa14.27□□□□□ -0.13
CLN3-262ENST00000637699 MPTX1A8MV57 137 aa14.26□□□□□ -0.13
CLN3-262ENST00000637699 K7EMT4 169 aa14.26□□□□□ -0.13
CLN3-262ENST00000637699 TNFAIP8O95379 198 aa14.26□□□□□ -0.13
CLN3-262ENST00000637699 PPYP01298 95 aa14.26□□□□□ -0.13
CLN3-262ENST00000637699 RPS19P39019 145 aaKnown RBP14.26□□□□□ -0.13
CLN3-262ENST00000637699 TFPI2P48307 235 aa14.26□□□□□ -0.13
CLN3-262ENST00000637699 LSM3P62310 102 aaKnown RBP14.26□□□□□ -0.13
CLN3-262ENST00000637699 WT1-ASQ06250 92 aa14.26□□□□□ -0.13
CLN3-262ENST00000637699 CATR1Q13166 79 aa14.26□□□□□ -0.13
CLN3-262ENST00000637699 MSMO1Q15800 293 aa14.26□□□□□ -0.13
CLN3-262ENST00000637699 POU2AF1Q16633 256 aa14.26□□□□□ -0.13
CLN3-262ENST00000637699 GVQW1Q8N7I0 195 aa14.26□□□□□ -0.13
CLN3-262ENST00000637699 ZBTB34Q8NCN2 500 aa14.26□□□□□ -0.13
CLN3-262ENST00000637699 BEST4Q8NFU0 473 aa14.26□□□□□ -0.13
CLN3-262ENST00000637699 OR51H1Q8NH63 302 aa14.26□□□□□ -0.13
CLN3-262ENST00000637699 MFFQ9GZY8 342 aa14.26□□□□□ -0.13
CLN3-262ENST00000637699 C21orf62Q9NYP8 219 aa14.26□□□□□ -0.13
CLN3-262ENST00000637699 TEX50A0A1B0GTY4 177 aa14.25□□□□□ -0.13
CLN3-262ENST00000637699 FCER2P06734 321 aa14.25□□□□□ -0.13
CLN3-262ENST00000637699 MFAP2P55001 183 aa14.25□□□□□ -0.13
CLN3-262ENST00000637699 FXYD4P59646 89 aa14.25□□□□□ -0.13
CLN3-262ENST00000637699 OR11H2Q8NH07 326 aa14.25□□□□□ -0.13
CLN3-262ENST00000637699 SCARB1Q8WTV0 552 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms