RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 FLYWCH2Q96CP2 140 aaKnown RBP9.23□□□□□ -0.93
CLN3-244ENST00000636147 KCNS1Q96KK3 526 aa9.23□□□□□ -0.93
CLN3-244ENST00000636147 PCED1AQ9H1Q7 454 aa9.23□□□□□ -0.93
CLN3-244ENST00000636147 CLEC5AQ9NY25 188 aa9.23□□□□□ -0.93
CLN3-244ENST00000636147 DNAH14Q0VDD8 3507 aa9.23□□□□□ -0.93
CLN3-244ENST00000636147 K7ERU9 68 aa9.23□□□□□ -0.93
CLN3-244ENST00000636147 LEPROTL1O95214 131 aa9.23□□□□□ -0.93
CLN3-244ENST00000636147 CA2P00918 260 aa9.23□□□□□ -0.93
CLN3-244ENST00000636147 IGLV3-19P01714 112 aa9.23□□□□□ -0.93
CLN3-244ENST00000636147 GPX1P07203 203 aa9.23□□□□□ -0.93
CLN3-244ENST00000636147 CYC1P08574 325 aa9.23□□□□□ -0.93
CLN3-244ENST00000636147 FCER1GP30273 86 aa9.23□□□□□ -0.93
CLN3-244ENST00000636147 REG1BP48304 166 aa9.23□□□□□ -0.93
CLN3-244ENST00000636147 MRPL14Q6P1L8 145 aaKnown RBP9.23□□□□□ -0.93
CLN3-244ENST00000636147 TREML4Q6UXN2 200 aa9.23□□□□□ -0.93
CLN3-244ENST00000636147 FA2HQ7L5A8 372 aa9.23□□□□□ -0.93
CLN3-244ENST00000636147 ODF3L1Q8IXM7 274 aa9.23□□□□□ -0.93
CLN3-244ENST00000636147 STPG4Q8N801 248 aa9.23□□□□□ -0.93
CLN3-244ENST00000636147 C20orf144Q9BQM9 153 aa9.23□□□□□ -0.93
CLN3-244ENST00000636147 PYGO2Q9BRQ0 406 aa9.23□□□□□ -0.93
CLN3-244ENST00000636147 PPP1R14DQ9NXH3 145 aa9.23□□□□□ -0.93
CLN3-244ENST00000636147 PRB4P10163 310 aaPredicted RBP9.22□□□□□ -0.93
CLN3-244ENST00000636147 NPPCP23582 126 aa9.22□□□□□ -0.93
CLN3-244ENST00000636147 ZNF497Q6ZNH5 498 aa9.22□□□□□ -0.93
CLN3-244ENST00000636147 BCL2L2Q92843 193 aaPredicted RBP9.22□□□□□ -0.93
CLN3-244ENST00000636147 CXXC4Q9H2H0 198 aa9.22□□□□□ -0.93
CLN3-244ENST00000636147 KLF13Q9Y2Y9 288 aaPredicted RBP9.22□□□□□ -0.93
CLN3-244ENST00000636147 YTHDF2Q9Y5A9 579 aaKnown RBP9.22□□□□□ -0.93
CLN3-244ENST00000636147 OR51B2Q9Y5P1 312 aa9.22□□□□□ -0.93
CLN3-244ENST00000636147 TTC28Q96AY4 2481 aa9.22□□□□□ -0.93
CLN3-244ENST00000636147 TRGV10A0A0A0MS01 117 aa9.22□□□□□ -0.93
CLN3-244ENST00000636147 ADH4P08319 380 aa9.22□□□□□ -0.93
CLN3-244ENST00000636147 CCL11P51671 97 aa9.22□□□□□ -0.93
CLN3-244ENST00000636147 RELQ04864 619 aaPredicted RBP9.22□□□□□ -0.93
CLN3-244ENST00000636147 FBLN7Q53RD9 439 aa9.22□□□□□ -0.93
CLN3-244ENST00000636147 C19orf35Q6ZS72 473 aa9.22□□□□□ -0.93
CLN3-244ENST00000636147 GGNQ86UU5 652 aa9.22□□□□□ -0.93
CLN3-244ENST00000636147 OR1B1Q8NGR6 318 aa9.22□□□□□ -0.93
CLN3-244ENST00000636147 CHRDL1Q9BU40 450 aa9.22□□□□□ -0.93
CLN3-244ENST00000636147 ABCA4P78363 2273 aa9.22□□□□□ -0.93
CLN3-244ENST00000636147 SMPD2O60906 423 aa9.22□□□□□ -0.93
CLN3-244ENST00000636147 KLF3P57682 345 aaPredicted RBP9.22□□□□□ -0.93
CLN3-244ENST00000636147 EFNB3Q15768 340 aa9.22□□□□□ -0.93
CLN3-244ENST00000636147 ZNRF1Q8ND25 227 aa9.22□□□□□ -0.93
CLN3-244ENST00000636147 RAB37Q96AX2 223 aa9.22□□□□□ -0.93
CLN3-244ENST00000636147 TMEM45BQ96B21 275 aa9.22□□□□□ -0.93
CLN3-244ENST00000636147 GGTLC1Q9BX51 225 aa9.22□□□□□ -0.93
CLN3-244ENST00000636147 TTTY12Q9BZ98 90 aa9.22□□□□□ -0.93
CLN3-244ENST00000636147 AMMECR1Q9Y4X0 333 aaPredicted RBP9.22□□□□□ -0.93
CLN3-244ENST00000636147 ARFGEF3Q5TH69 2177 aa9.22□□□□□ -0.93
CLN3-244ENST00000636147 PINLYPA6NC86 204 aa9.21□□□□□ -0.93
CLN3-244ENST00000636147 OR4C46A6NHA9 309 aa9.21□□□□□ -0.93
CLN3-244ENST00000636147 TYMSP04818 313 aa9.21□□□□□ -0.93
CLN3-244ENST00000636147 SP1P08047 785 aa9.21□□□□□ -0.93
CLN3-244ENST00000636147 LINC00869P0C866 280 aa9.21□□□□□ -0.93
CLN3-244ENST00000636147 SLC25A34Q6PIV7 304 aa9.21□□□□□ -0.93
CLN3-244ENST00000636147 PGLYRP4Q96LB8 373 aa9.21□□□□□ -0.93
CLN3-244ENST00000636147 MCRIP2Q9BUT9 160 aaKnown RBP9.21□□□□□ -0.93
CLN3-244ENST00000636147 IL18BPO95998 194 aa9.21□□□□□ -0.94
CLN3-244ENST00000636147 P01737 135 aa9.21□□□□□ -0.94
CLN3-244ENST00000636147 STAG3L2P0CL84 134 aa9.21□□□□□ -0.94
CLN3-244ENST00000636147 STAG3L3P0CL85 134 aa9.21□□□□□ -0.94
CLN3-244ENST00000636147 ZNF83P51522 516 aa9.21□□□□□ -0.94
CLN3-244ENST00000636147 FAM162BQ5T6X4 162 aa9.21□□□□□ -0.94
CLN3-244ENST00000636147 MOGAT3Q86VF5 341 aa9.21□□□□□ -0.94
CLN3-244ENST00000636147 OR8A1Q8NGG7 326 aa9.21□□□□□ -0.94
CLN3-244ENST00000636147 MAP1LC3CQ9BXW4 147 aa9.21□□□□□ -0.94
CLN3-244ENST00000636147 TRAV3A0A0B4J244 114 aa9.21□□□□□ -0.94
CLN3-244ENST00000636147 LINC00473A8K010 186 aa9.21□□□□□ -0.94
CLN3-244ENST00000636147 M0R1B8 84 aa9.21□□□□□ -0.94
CLN3-244ENST00000636147 ETV2O00321 342 aaPredicted RBP9.21□□□□□ -0.94
CLN3-244ENST00000636147 TMEM11P17152 192 aa9.21□□□□□ -0.94
CLN3-244ENST00000636147 COL8A1P27658 744 aa9.21□□□□□ -0.94
CLN3-244ENST00000636147 HSPE1P61604 102 aaKnown RBP9.21□□□□□ -0.94
CLN3-244ENST00000636147 AARDQ4LEZ3 155 aa9.21□□□□□ -0.94
CLN3-244ENST00000636147 FOXL2NBQ6ZUU3 175 aa9.21□□□□□ -0.94
CLN3-244ENST00000636147 PDPNQ86YL7 162 aa9.21□□□□□ -0.94
CLN3-244ENST00000636147 OR10X1Q8NGY0 326 aa9.21□□□□□ -0.94
CLN3-244ENST00000636147 KLF14Q8TD94 323 aaPredicted RBP9.21□□□□□ -0.94
CLN3-244ENST00000636147 PAXXQ9BUH6 204 aa9.21□□□□□ -0.94
CLN3-244ENST00000636147 TRBV9A0A0B4J1U6 114 aa9.2□□□□□ -0.94
CLN3-244ENST00000636147 C15orf62A8K5M9 175 aa9.2□□□□□ -0.94
CLN3-244ENST00000636147 ISLRO14498 428 aa9.2□□□□□ -0.94
CLN3-244ENST00000636147 FRMD6-AS1P0C7T7 363 aa9.2□□□□□ -0.94
CLN3-244ENST00000636147 CT45A6P0DMU7 189 aa9.2□□□□□ -0.94
CLN3-244ENST00000636147 CT45A5P0DMU8 189 aa9.2□□□□□ -0.94
CLN3-244ENST00000636147 CT45A7P0DMV0 189 aa9.2□□□□□ -0.94
CLN3-244ENST00000636147 HIST1H1EP10412 219 aaKnown RBP9.2□□□□□ -0.94
CLN3-244ENST00000636147 GFRA1P56159 465 aa9.2□□□□□ -0.94
CLN3-244ENST00000636147 SSPNQ14714 243 aa9.2□□□□□ -0.94
CLN3-244ENST00000636147 CT45A1Q5HYN5 189 aa9.2□□□□□ -0.94
CLN3-244ENST00000636147 ZNF841Q6ZN19 808 aa9.2□□□□□ -0.94
CLN3-244ENST00000636147 CT45A3Q8NHU0 189 aa9.2□□□□□ -0.94
CLN3-244ENST00000636147 TWSG1Q9GZX9 223 aa9.2□□□□□ -0.94
CLN3-244ENST00000636147 KIR2DL5BA0A0G2JN68 375 aa9.2□□□□□ -0.94
CLN3-244ENST00000636147 KIR2DL5BA0A0G2JPC4 375 aa9.2□□□□□ -0.94
CLN3-244ENST00000636147 GAGE10A6NGK3 116 aa9.2□□□□□ -0.94
CLN3-244ENST00000636147 HYPMO75409 117 aa9.2□□□□□ -0.94
CLN3-244ENST00000636147 SUB1P53999 127 aaKnown RBP eCLIP9.2□□□□□ -0.94
CLN3-244ENST00000636147 PSG7Q13046 419 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms