RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 BRI3O95415 125 aa-0.03□□□□□ -2.41
SCN1A-208ENST00000625916 C1QAP02745 245 aa-0.03□□□□□ -2.41
SCN1A-208ENST00000625916 S100A9P06702 114 aaKnown RBP-0.03□□□□□ -2.41
SCN1A-208ENST00000625916 ASAH2BP0C7U1 165 aa-0.03□□□□□ -2.41
SCN1A-208ENST00000625916 RD3LP0DJH9 198 aa-0.03□□□□□ -2.41
SCN1A-208ENST00000625916 ZNF80P51504 273 aaPredicted RBP-0.03□□□□□ -2.41
SCN1A-208ENST00000625916 RAB4BP61018 213 aa-0.03□□□□□ -2.41
SCN1A-208ENST00000625916 CXCR4P61073 352 aa-0.03□□□□□ -2.41
SCN1A-208ENST00000625916 RPL18Q07020 188 aaKnown RBP-0.03□□□□□ -2.41
SCN1A-208ENST00000625916 KCNJ8Q15842 424 aa-0.03□□□□□ -2.41
SCN1A-208ENST00000625916 TNFAIP8L3Q5GJ75 292 aa-0.03□□□□□ -2.41
SCN1A-208ENST00000625916 FAM78BQ5VT40 261 aa-0.03□□□□□ -2.41
SCN1A-208ENST00000625916 ZNF826PQ6ZT77 177 aa-0.03□□□□□ -2.41
SCN1A-208ENST00000625916 HIST2H3AQ71DI3 136 aa-0.03□□□□□ -2.41
SCN1A-208ENST00000625916 PHF13Q86YI8 300 aaPredicted RBP-0.03□□□□□ -2.41
SCN1A-208ENST00000625916 CNPY4Q8N129 248 aa-0.03□□□□□ -2.41
SCN1A-208ENST00000625916 LINC00311Q8N616 119 aa-0.03□□□□□ -2.41
SCN1A-208ENST00000625916 OR4D11Q8NGI4 311 aa-0.03□□□□□ -2.41
SCN1A-208ENST00000625916 BORCS5Q969J3 196 aa-0.03□□□□□ -2.41
SCN1A-208ENST00000625916 TMEM106AQ96A25 262 aa-0.03□□□□□ -2.41
SCN1A-208ENST00000625916 SPACA1Q9HBV2 294 aa-0.03□□□□□ -2.41
SCN1A-208ENST00000625916 FKBP14Q9NWM8 211 aa-0.03□□□□□ -2.41
SCN1A-208ENST00000625916 PAQR5Q9NXK6 330 aaPredicted RBP-0.03□□□□□ -2.41
SCN1A-208ENST00000625916 MED12LQ86YW9 2145 aa-0.04□□□□□ -2.42
SCN1A-208ENST00000625916 FAT4Q6V0I7 4981 aa-0.04□□□□□ -2.42
SCN1A-208ENST00000625916 FABP5P3A8MUU1 101 aa-0.04□□□□□ -2.42
SCN1A-208ENST00000625916 MKRN2OSH3BPM6 223 aa-0.04□□□□□ -2.42
SCN1A-208ENST00000625916 GOLGA8MH3BSY2 632 aa-0.04□□□□□ -2.42
SCN1A-208ENST00000625916 LST1O00453 97 aa-0.04□□□□□ -2.42
SCN1A-208ENST00000625916 TOX3O15405 576 aaPredicted RBP-0.04□□□□□ -2.42
SCN1A-208ENST00000625916 OR1I1O60431 355 aa-0.04□□□□□ -2.42
SCN1A-208ENST00000625916 KRT75O95678 551 aa-0.04□□□□□ -2.42
SCN1A-208ENST00000625916 ORM1P02763 201 aa-0.04□□□□□ -2.42
SCN1A-208ENST00000625916 CLPSP04118 112 aa-0.04□□□□□ -2.42
SCN1A-208ENST00000625916 KRT7P08729 469 aa-0.04□□□□□ -2.42
SCN1A-208ENST00000625916 FGF6P10767 208 aa-0.04□□□□□ -2.42
SCN1A-208ENST00000625916 FKBP2P26885 142 aaKnown RBP-0.04□□□□□ -2.42
SCN1A-208ENST00000625916 CD151P48509 253 aa-0.04□□□□□ -2.42
SCN1A-208ENST00000625916 BOD1L2Q8IYS8 172 aa-0.04□□□□□ -2.42
SCN1A-208ENST00000625916 JOSD2Q8TAC2 188 aa-0.04□□□□□ -2.42
SCN1A-208ENST00000625916 EEF1AKMT1Q8WVE0 214 aa-0.04□□□□□ -2.42
SCN1A-208ENST00000625916 PACRGQ96M98 296 aaPredicted RBP-0.04□□□□□ -2.42
SCN1A-208ENST00000625916 SPRR2GQ9BYE4 73 aa-0.04□□□□□ -2.42
SCN1A-208ENST00000625916 NDEL1Q9GZM8 345 aa-0.04□□□□□ -2.42
SCN1A-208ENST00000625916 DERL2Q9GZP9 239 aa-0.04□□□□□ -2.42
SCN1A-208ENST00000625916 ACER3Q9NUN7 267 aa-0.04□□□□□ -2.42
SCN1A-208ENST00000625916 CHMP5Q9NZZ3 219 aa-0.04□□□□□ -2.42
SCN1A-208ENST00000625916 CKLFQ9UBR5 152 aa-0.04□□□□□ -2.42
SCN1A-208ENST00000625916 PEAK1Q9H792 1746 aa-0.04□□□□□ -2.42
SCN1A-208ENST00000625916 COL4A5P29400 1685 aa-0.05□□□□□ -2.42
SCN1A-208ENST00000625916 KIAA1109Q2LD37 5005 aa-0.05□□□□□ -2.42
SCN1A-208ENST00000625916 TRBV6-8A0A0A6YYG3 113 aa-0.05□□□□□ -2.42
SCN1A-208ENST00000625916 C1orf232A0A0U1RR37 186 aa-0.05□□□□□ -2.42
SCN1A-208ENST00000625916 OR4C45A6NMZ5 311 aa-0.05□□□□□ -2.42
SCN1A-208ENST00000625916 SMLR1H3BR10 107 aa-0.05□□□□□ -2.42
SCN1A-208ENST00000625916 SRP19P09132 144 aaKnown RBP-0.05□□□□□ -2.42
SCN1A-208ENST00000625916 KRTAP2-3P0C7H8 128 aa-0.05□□□□□ -2.42
SCN1A-208ENST00000625916 PET100P0DJ07 73 aa-0.05□□□□□ -2.42
SCN1A-208ENST00000625916 CLDN12P56749 244 aa-0.05□□□□□ -2.42
SCN1A-208ENST00000625916 FABP9Q0Z7S8 132 aa-0.05□□□□□ -2.42
SCN1A-208ENST00000625916 STX5Q13190 355 aa-0.05□□□□□ -2.42
SCN1A-208ENST00000625916 PDE6HQ13956 83 aa-0.05□□□□□ -2.42
SCN1A-208ENST00000625916 CIRBPQ14011 172 aaKnown RBP-0.05□□□□□ -2.42
SCN1A-208ENST00000625916 SPANXN5Q5MJ07 72 aa-0.05□□□□□ -2.42
SCN1A-208ENST00000625916 SYPL2Q5VXT5 272 aa-0.05□□□□□ -2.42
SCN1A-208ENST00000625916 DNM1P34Q6PK57 102 aa-0.05□□□□□ -2.42
SCN1A-208ENST00000625916 SLC51BQ86UW2 128 aa-0.05□□□□□ -2.42
SCN1A-208ENST00000625916 DHRS9Q9BPW9 319 aa-0.05□□□□□ -2.42
SCN1A-208ENST00000625916 KRTAP2-4Q9BYR9 128 aa-0.05□□□□□ -2.42
SCN1A-208ENST00000625916 PLAC8Q9NZF1 115 aa-0.05□□□□□ -2.42
SCN1A-208ENST00000625916 IL36BQ9NZH7 164 aa-0.05□□□□□ -2.42
SCN1A-208ENST00000625916 PXMP4Q9Y6I8 212 aa-0.05□□□□□ -2.42
SCN1A-208ENST00000625916 NAV2Q8IVL1 2488 aa-0.05□□□□□ -2.42
SCN1A-208ENST00000625916 ANAPC1Q9H1A4 1944 aa-0.05□□□□□ -2.42
SCN1A-208ENST00000625916 ANKHD1Q8IWZ3 2542 aaKnown RBP-0.06□□□□□ -2.42
SCN1A-208ENST00000625916 KIF15Q9NS87 1388 aa-0.06□□□□□ -2.42
SCN1A-208ENST00000625916 ADGRB2O60241 1585 aa-0.06□□□□□ -2.42
SCN1A-208ENST00000625916 ZNF879B4DU55 563 aa-0.06□□□□□ -2.42
SCN1A-208ENST00000625916 DISC1C4P0D8 188 aa-0.06□□□□□ -2.42
SCN1A-208ENST00000625916 INE1O15225 51 aa-0.06□□□□□ -2.42
SCN1A-208ENST00000625916 HTR1AP08908 422 aa-0.06□□□□□ -2.42
SCN1A-208ENST00000625916 KCNE1P15382 129 aa-0.06□□□□□ -2.42
SCN1A-208ENST00000625916 ZNF25P17030 456 aaPredicted RBP-0.06□□□□□ -2.42
SCN1A-208ENST00000625916 SPI1P17947 270 aa-0.06□□□□□ -2.42
SCN1A-208ENST00000625916 CDC34P49427 236 aaPredicted RBP-0.06□□□□□ -2.42
SCN1A-208ENST00000625916 EFNA4P52798 201 aa-0.06□□□□□ -2.42
SCN1A-208ENST00000625916 TNFAIP6P98066 277 aaPredicted RBP-0.06□□□□□ -2.42
SCN1A-208ENST00000625916 ANGPT1Q15389 498 aa-0.06□□□□□ -2.42
SCN1A-208ENST00000625916 KRTAP20-1Q3LI63 56 aa-0.06□□□□□ -2.42
SCN1A-208ENST00000625916 IBA57Q5T440 356 aaKnown RBP-0.06□□□□□ -2.42
SCN1A-208ENST00000625916 C1orf194Q5T5A4 169 aa-0.06□□□□□ -2.42
SCN1A-208ENST00000625916 FAM19A5Q7Z5A7 132 aaPredicted RBP-0.06□□□□□ -2.42
SCN1A-208ENST00000625916 DEFB128Q7Z7B8 93 aa-0.06□□□□□ -2.42
SCN1A-208ENST00000625916 CD302Q8IX05 232 aa-0.06□□□□□ -2.42
SCN1A-208ENST00000625916 GPR32P1Q8NGA4 272 aa-0.06□□□□□ -2.42
SCN1A-208ENST00000625916 ROPN1LQ96C74 230 aa-0.06□□□□□ -2.42
SCN1A-208ENST00000625916 KRTAP2-1Q9BYU5 128 aa-0.06□□□□□ -2.42
SCN1A-208ENST00000625916 SPANXB1Q9NS25 103 aaPredicted RBP-0.06□□□□□ -2.42
SCN1A-208ENST00000625916 SYNE1Q8NF91 8797 aaKnown RBP-0.06□□□□□ -2.42
SCN1A-208ENST00000625916 SPTBN4Q9H254 2564 aa-0.06□□□□□ -2.42
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms