RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 ANKRD55Q3KP44 614 aa10.4□□□□□ -0.74
LINC00540-202ENST00000616974 TMEM268Q5VZI3 342 aa10.4□□□□□ -0.74
LINC00540-202ENST00000616974 TTC9CQ8N5M4 171 aa10.4□□□□□ -0.74
LINC00540-202ENST00000616974 OR5M8Q8NGP6 311 aa10.4□□□□□ -0.74
LINC00540-202ENST00000616974 NDUFA4L2Q9NRX3 87 aa10.4□□□□□ -0.74
LINC00540-202ENST00000616974 ZFP57Q9NU63 452 aa10.4□□□□□ -0.74
LINC00540-202ENST00000616974 NDUFB8O95169 186 aa10.4□□□□□ -0.74
LINC00540-202ENST00000616974 HLA-AP01891 365 aaKnown RBP10.4□□□□□ -0.74
LINC00540-202ENST00000616974 CTRB1P17538 263 aa10.4□□□□□ -0.74
LINC00540-202ENST00000616974 AP3S2P59780 193 aa10.4□□□□□ -0.74
LINC00540-202ENST00000616974 RHOGP84095 191 aa10.4□□□□□ -0.74
LINC00540-202ENST00000616974 PPP1R1AQ13522 171 aa10.4□□□□□ -0.74
LINC00540-202ENST00000616974 FHL3Q13643 280 aa10.4□□□□□ -0.74
LINC00540-202ENST00000616974 CTRB2Q6GPI1 263 aa10.4□□□□□ -0.74
LINC00540-202ENST00000616974 H2BFWTQ7Z2G1 175 aa10.4□□□□□ -0.74
LINC00540-202ENST00000616974 LYZL2Q7Z4W2 148 aa10.4□□□□□ -0.74
LINC00540-202ENST00000616974 TCTEX1D1Q8N7M0 179 aa10.4□□□□□ -0.74
LINC00540-202ENST00000616974 SLC35G3Q8N808 338 aa10.4□□□□□ -0.74
LINC00540-202ENST00000616974 CCDC71LQ8N9Z2 235 aa10.4□□□□□ -0.74
LINC00540-202ENST00000616974 COMMD5Q9GZQ3 224 aa10.4□□□□□ -0.74
LINC00540-202ENST00000616974 TENM3Q9P273 2699 aa10.4□□□□□ -0.75
LINC00540-202ENST00000616974 TRBV9A0A0B4J1U6 114 aa10.39□□□□□ -0.75
LINC00540-202ENST00000616974 MFSD2BA6NFX1 497 aa10.39□□□□□ -0.75
LINC00540-202ENST00000616974 ANXA7P20073 488 aaKnown RBP10.39□□□□□ -0.75
LINC00540-202ENST00000616974 S100GP29377 79 aa10.39□□□□□ -0.75
LINC00540-202ENST00000616974 UBE2MP61081 183 aaKnown RBP10.39□□□□□ -0.75
LINC00540-202ENST00000616974 OR4A5Q8NH83 315 aa10.39□□□□□ -0.75
LINC00540-202ENST00000616974 BATF3Q9NR55 127 aa10.39□□□□□ -0.75
LINC00540-202ENST00000616974 IGHV3-48P01763 117 aa10.39□□□□□ -0.75
LINC00540-202ENST00000616974 OR13C7P0DN81 318 aa10.39□□□□□ -0.75
LINC00540-202ENST00000616974 EDN2P20800 178 aa10.39□□□□□ -0.75
LINC00540-202ENST00000616974 PSMB6P28072 239 aa10.39□□□□□ -0.75
LINC00540-202ENST00000616974 HOXD3P31249 432 aaPredicted RBP10.39□□□□□ -0.75
LINC00540-202ENST00000616974 FAUP35544 74 aaKnown RBP10.39□□□□□ -0.75
LINC00540-202ENST00000616974 INPP1P49441 399 aa10.39□□□□□ -0.75
LINC00540-202ENST00000616974 GPR146Q96CH1 333 aa10.39□□□□□ -0.75
LINC00540-202ENST00000616974 ZC4H2Q9NQZ6 224 aa10.39□□□□□ -0.75
LINC00540-202ENST00000616974 PPP5D1E7EU14 171 aa10.38□□□□□ -0.75
LINC00540-202ENST00000616974 ST8SIA3O43173 380 aa10.38□□□□□ -0.75
LINC00540-202ENST00000616974 NDUFB6O95139 128 aa10.38□□□□□ -0.75
LINC00540-202ENST00000616974 LGALS1P09382 135 aaKnown RBP10.38□□□□□ -0.75
LINC00540-202ENST00000616974 MAS1LP35410 378 aa10.38□□□□□ -0.75
LINC00540-202ENST00000616974 C15orf32Q32M92 178 aa10.38□□□□□ -0.75
LINC00540-202ENST00000616974 OR52B4Q8NGK2 314 aa10.38□□□□□ -0.75
LINC00540-202ENST00000616974 DLX4Q92988 240 aaPredicted RBP10.38□□□□□ -0.75
LINC00540-202ENST00000616974 FAM212BQ9NTI7 297 aaPredicted RBP10.38□□□□□ -0.75
LINC00540-202ENST00000616974 DNAH9Q9NYC9 4486 aa10.37□□□□□ -0.75
LINC00540-202ENST00000616974 LYRM1O43325 122 aa10.37□□□□□ -0.75
LINC00540-202ENST00000616974 CRYGCP07315 174 aa10.37□□□□□ -0.75
LINC00540-202ENST00000616974 CD33P20138 364 aa10.37□□□□□ -0.75
LINC00540-202ENST00000616974 VAMP1P23763 118 aa10.37□□□□□ -0.75
LINC00540-202ENST00000616974 HAPLN4Q86UW8 402 aa10.37□□□□□ -0.75
LINC00540-202ENST00000616974 SGPP2Q8IWX5 399 aa10.37□□□□□ -0.75
LINC00540-202ENST00000616974 WFDC9Q8NEX5 89 aa10.37□□□□□ -0.75
LINC00540-202ENST00000616974 OR1N2Q8NGR9 330 aa10.37□□□□□ -0.75
LINC00540-202ENST00000616974 RBPMSQ93062 196 aaKnown RBP10.37□□□□□ -0.75
LINC00540-202ENST00000616974 GALNT14Q96FL9 552 aa10.37□□□□□ -0.75
LINC00540-202ENST00000616974 CCDC140Q96MF4 163 aa10.37□□□□□ -0.75
LINC00540-202ENST00000616974 CACNG5Q9UF02 275 aa10.37□□□□□ -0.75
LINC00540-202ENST00000616974 SELENOKQ9Y6D0 94 aa10.37□□□□□ -0.75
LINC00540-202ENST00000616974 NPIPB5A8MRT5 1133 aa10.37□□□□□ -0.75
LINC00540-202ENST00000616974 CREBL2O60519 120 aaPredicted RBP10.37□□□□□ -0.75
LINC00540-202ENST00000616974 TRAPPC2P0DI81 140 aa10.37□□□□□ -0.75
LINC00540-202ENST00000616974 TRAPPC2BP0DI82 140 aa10.37□□□□□ -0.75
LINC00540-202ENST00000616974 ECI1P42126 302 aa10.37□□□□□ -0.75
LINC00540-202ENST00000616974 RBMS2Q15434 407 aaKnown RBP10.37□□□□□ -0.75
LINC00540-202ENST00000616974 SAMD5Q5TGI4 173 aa10.37□□□□□ -0.75
LINC00540-202ENST00000616974 OR1L8Q8NGR8 309 aa10.37□□□□□ -0.75
LINC00540-202ENST00000616974 OR4A16Q8NH70 328 aa10.37□□□□□ -0.75
LINC00540-202ENST00000616974 TMEM56Q96MV1 263 aa10.37□□□□□ -0.75
LINC00540-202ENST00000616974 SLA2Q9H6Q3 261 aa10.37□□□□□ -0.75
LINC00540-202ENST00000616974 TMEM56-RWDD3S4R434 201 aa10.37□□□□□ -0.75
LINC00540-202ENST00000616974 IGLV11-55A0A075B6I3 123 aa10.36□□□□□ -0.75
LINC00540-202ENST00000616974 TRAV6A0A075B6T7 132 aa10.36□□□□□ -0.75
LINC00540-202ENST00000616974 MPTX1A8MV57 137 aa10.36□□□□□ -0.75
LINC00540-202ENST00000616974 SNAPC5O75971 98 aa10.36□□□□□ -0.75
LINC00540-202ENST00000616974 DHODHQ02127 395 aa10.36□□□□□ -0.75
LINC00540-202ENST00000616974 DCUN1D4Q92564 292 aa10.36□□□□□ -0.75
LINC00540-202ENST00000616974 FBXL7Q9UJT9 491 aa10.36□□□□□ -0.75
LINC00540-202ENST00000616974 KRTAP10-11P60412 298 aa10.36□□□□□ -0.75
LINC00540-202ENST00000616974 RUNX1Q01196 453 aa10.36□□□□□ -0.75
LINC00540-202ENST00000616974 ZNF616Q08AN1 781 aa10.36□□□□□ -0.75
LINC00540-202ENST00000616974 EXOSC2Q13868 293 aaKnown RBP10.36□□□□□ -0.75
LINC00540-202ENST00000616974 TMEM128Q5BJH2 165 aa10.36□□□□□ -0.75
LINC00540-202ENST00000616974 NMSQ5H8A3 153 aa10.36□□□□□ -0.75
LINC00540-202ENST00000616974 SLC25A42Q86VD7 318 aa10.36□□□□□ -0.75
LINC00540-202ENST00000616974 CENPSQ8N2Z9 138 aa10.36□□□□□ -0.75
LINC00540-202ENST00000616974 SLC25A21Q9BQT8 299 aaPredicted RBP10.36□□□□□ -0.75
LINC00540-202ENST00000616974 AIFM2Q9BRQ8 373 aa10.36□□□□□ -0.75
LINC00540-202ENST00000616974 ZNF257Q9Y2Q1 563 aa10.36□□□□□ -0.75
LINC00540-202ENST00000616974 IGHV3-35A0A0C4DH35 117 aa10.35□□□□□ -0.75
LINC00540-202ENST00000616974 BMPR1BO00238 502 aa10.35□□□□□ -0.75
LINC00540-202ENST00000616974 MYCNOSP40205 109 aa10.35□□□□□ -0.75
LINC00540-202ENST00000616974 DEFA6Q01524 100 aa10.35□□□□□ -0.75
LINC00540-202ENST00000616974 PRNDQ9UKY0 176 aa10.35□□□□□ -0.75
LINC00540-202ENST00000616974 STAB2Q8WWQ8 2551 aa10.34□□□□□ -0.75
LINC00540-202ENST00000616974 C13orf42A0A1B0GVH6 325 aa10.34□□□□□ -0.75
LINC00540-202ENST00000616974 ADAP1O75689 374 aa10.34□□□□□ -0.75
LINC00540-202ENST00000616974 DEFA4P12838 97 aa10.34□□□□□ -0.75
LINC00540-202ENST00000616974 SLC6A1P30531 599 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms