RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 NKX2-1P43699 371 aaPredicted RBP11.3□□□□□ -0.6
UPF1-211ENST00000600868 VDAC2P45880 294 aaPredicted RBP11.3□□□□□ -0.6
UPF1-211ENST00000600868 SRSF2Q01130 221 aaKnown RBP11.3□□□□□ -0.6
UPF1-211ENST00000600868 TMEM267Q0VDI3 215 aaPredicted RBP11.3□□□□□ -0.6
UPF1-211ENST00000600868 AKIRIN2Q53H80 203 aa11.3□□□□□ -0.6
UPF1-211ENST00000600868 ARSJQ5FYB0 599 aaPredicted RBP11.3□□□□□ -0.6
UPF1-211ENST00000600868 CXorf66Q5JRM2 361 aaPredicted RBP11.3□□□□□ -0.6
UPF1-211ENST00000600868 HSD17B13Q7Z5P4 300 aaPredicted RBP11.3□□□□□ -0.6
UPF1-211ENST00000600868 PRIMA1Q86XR5 153 aa11.3□□□□□ -0.6
UPF1-211ENST00000600868 ASB13Q8WXK3 278 aa11.3□□□□□ -0.6
UPF1-211ENST00000600868 FAM103A1Q9BTL3 118 aaKnown RBP11.3□□□□□ -0.6
UPF1-211ENST00000600868 JMJD1CQ15652 2540 aa11.29□□□□□ -0.6
UPF1-211ENST00000600868 IGLC7A0M8Q6 106 aa11.29□□□□□ -0.6
UPF1-211ENST00000600868 NXPH3O95157 252 aa11.29□□□□□ -0.6
UPF1-211ENST00000600868 HKR1P10072 659 aa11.29□□□□□ -0.6
UPF1-211ENST00000600868 TMEM95Q3KNT9 176 aa11.29□□□□□ -0.6
UPF1-211ENST00000600868 C19orf54Q5BKX5 351 aa11.29□□□□□ -0.6
UPF1-211ENST00000600868 MRPL41Q8IXM3 137 aaKnown RBP11.29□□□□□ -0.6
UPF1-211ENST00000600868 STPG2Q8N412 459 aa11.29□□□□□ -0.6
UPF1-211ENST00000600868 LFNGQ8NES3 379 aa11.29□□□□□ -0.6
UPF1-211ENST00000600868 OR4F5Q8NH21 305 aa11.29□□□□□ -0.6
UPF1-211ENST00000600868 CHAC2Q8WUX2 184 aa11.29□□□□□ -0.6
UPF1-211ENST00000600868 HINT2Q9BX68 163 aa11.29□□□□□ -0.6
UPF1-211ENST00000600868 RBKSQ9H477 322 aa11.29□□□□□ -0.6
UPF1-211ENST00000600868 PLEKHA3Q9HB20 300 aa11.29□□□□□ -0.6
UPF1-211ENST00000600868 SERTAD4Q9NUC0 356 aa11.29□□□□□ -0.6
UPF1-211ENST00000600868 SETD2Q9BYW2 2564 aaPredicted RBP11.28□□□□□ -0.6
UPF1-211ENST00000600868 TRAV41A0A0B4J266 112 aa11.28□□□□□ -0.6
UPF1-211ENST00000600868 A0A1B0GVG6 124 aa11.28□□□□□ -0.6
UPF1-211ENST00000600868 CEBPZOSA8MTT3 80 aa11.28□□□□□ -0.6
UPF1-211ENST00000600868 SYNGR2O43760 224 aa11.28□□□□□ -0.6
UPF1-211ENST00000600868 MBPP02686 304 aaPredicted RBP11.28□□□□□ -0.6
UPF1-211ENST00000600868 SPINK9Q5DT21 86 aa11.28□□□□□ -0.6
UPF1-211ENST00000600868 ASPHD1Q5U4P2 390 aa11.28□□□□□ -0.6
UPF1-211ENST00000600868 UNQ5815/PRO19632Q6UWF5 114 aa11.28□□□□□ -0.6
UPF1-211ENST00000600868 OR10W1Q8NGF6 305 aa11.28□□□□□ -0.6
UPF1-211ENST00000600868 LINC01006Q8NI28 216 aa11.28□□□□□ -0.6
UPF1-211ENST00000600868 TAF15Q92804 592 aaKnown RBP eCLIP11.28□□□□□ -0.6
UPF1-211ENST00000600868 NOL4LQ96MY1 436 aaPredicted RBP11.28□□□□□ -0.6
UPF1-211ENST00000600868 GON7Q9BXV9 100 aa11.28□□□□□ -0.6
UPF1-211ENST00000600868 ZNF436Q9C0F3 470 aaPredicted RBP11.28□□□□□ -0.6
UPF1-211ENST00000600868 ENY2Q9NPA8 101 aa11.28□□□□□ -0.6
UPF1-211ENST00000600868 ZFP57Q9NU63 452 aa11.28□□□□□ -0.6
UPF1-211ENST00000600868 WSB1Q9Y6I7 421 aa11.28□□□□□ -0.6
UPF1-211ENST00000600868 hCG_2014768A0A024R1R8 64 aa11.27□□□□□ -0.61
UPF1-211ENST00000600868 NPIPB5A8MRT5 1133 aa11.27□□□□□ -0.61
UPF1-211ENST00000600868 G3V318 75 aa11.27□□□□□ -0.61
UPF1-211ENST00000600868 WRBO00258 174 aa11.27□□□□□ -0.61
UPF1-211ENST00000600868 LY86O95711 162 aa11.27□□□□□ -0.61
UPF1-211ENST00000600868 GIPP09681 153 aaPredicted RBP11.27□□□□□ -0.61
UPF1-211ENST00000600868 AREGP15514 252 aa11.27□□□□□ -0.61
UPF1-211ENST00000600868 HOXA1P49639 335 aaPredicted RBP11.27□□□□□ -0.61
UPF1-211ENST00000600868 POLR2GP62487 172 aaKnown RBP eCLIP11.27□□□□□ -0.61
UPF1-211ENST00000600868 ERHP84090 104 aaKnown RBP11.27□□□□□ -0.61
UPF1-211ENST00000600868 CFHR3Q02985 330 aa11.27□□□□□ -0.61
UPF1-211ENST00000600868 WT1-ASQ06250 92 aa11.27□□□□□ -0.61
UPF1-211ENST00000600868 ECSCRQ19T08 205 aa11.27□□□□□ -0.61
UPF1-211ENST00000600868 TTC9CQ8N5M4 171 aa11.27□□□□□ -0.61
UPF1-211ENST00000600868 OR2C3Q8N628 320 aa11.27□□□□□ -0.61
UPF1-211ENST00000600868 DTD1Q8TEA8 209 aa11.27□□□□□ -0.61
UPF1-211ENST00000600868 WNT10AQ9GZT5 417 aa11.27□□□□□ -0.61
UPF1-211ENST00000600868 MAGT1Q9H0U3 335 aa11.27□□□□□ -0.61
UPF1-211ENST00000600868 LINC00527Q9UJ94 153 aa11.27□□□□□ -0.61
UPF1-211ENST00000600868 C2CD3Q4AC94 2353 aa11.27□□□□□ -0.61
UPF1-211ENST00000600868 A0A1B0GUS0 222 aa11.26□□□□□ -0.61
UPF1-211ENST00000600868 CLPSL1A2RUU4 121 aa11.26□□□□□ -0.61
UPF1-211ENST00000600868 K7EPK0 472 aa11.26□□□□□ -0.61
UPF1-211ENST00000600868 SCGB1D2O95969 90 aa11.26□□□□□ -0.61
UPF1-211ENST00000600868 CRYGCP07315 174 aa11.26□□□□□ -0.61
UPF1-211ENST00000600868 APELAP0DMC3 54 aa11.26□□□□□ -0.61
UPF1-211ENST00000600868 OR13C7P0DN81 318 aa11.26□□□□□ -0.61
UPF1-211ENST00000600868 CTRB1P17538 263 aa11.26□□□□□ -0.61
UPF1-211ENST00000600868 PSMB6P28072 239 aa11.26□□□□□ -0.61
UPF1-211ENST00000600868 PPIFP30405 207 aaKnown RBP11.26□□□□□ -0.61
UPF1-211ENST00000600868 BCAP31P51572 246 aa11.26□□□□□ -0.61
UPF1-211ENST00000600868 RAP2BP61225 183 aa11.26□□□□□ -0.61
UPF1-211ENST00000600868 RAB32Q13637 225 aa11.26□□□□□ -0.61
UPF1-211ENST00000600868 CTRB2Q6GPI1 263 aa11.26□□□□□ -0.61
UPF1-211ENST00000600868 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.26□□□□□ -0.61
UPF1-211ENST00000600868 FAM110DQ8TAY7 271 aaPredicted RBP11.26□□□□□ -0.61
UPF1-211ENST00000600868 WDR89Q96FK6 387 aaPredicted RBP11.26□□□□□ -0.61
UPF1-211ENST00000600868 CIB3Q96Q77 187 aaPredicted RBP11.26□□□□□ -0.61
UPF1-211ENST00000600868 RAB40CQ96S21 281 aa11.26□□□□□ -0.61
UPF1-211ENST00000600868 HIPK2Q9H2X6 1198 aa11.26□□□□□ -0.61
UPF1-211ENST00000600868 RCL1Q9Y2P8 373 aaKnown RBP11.26□□□□□ -0.61
UPF1-211ENST00000600868 SLC35B1P78383 322 aa11.25□□□□□ -0.61
UPF1-211ENST00000600868 ZNF114Q8NC26 417 aa11.25□□□□□ -0.61
UPF1-211ENST00000600868 OR5T1Q8NG75 326 aa11.25□□□□□ -0.61
UPF1-211ENST00000600868 PPP1R1CQ8WVI7 109 aa11.25□□□□□ -0.61
UPF1-211ENST00000600868 SMIM8Q96KF7 97 aa11.25□□□□□ -0.61
UPF1-211ENST00000600868 HEYLQ9NQ87 328 aaPredicted RBP11.25□□□□□ -0.61
UPF1-211ENST00000600868 LSM5Q9Y4Y9 91 aaKnown RBP11.25□□□□□ -0.61
UPF1-211ENST00000600868 U3KQ87 197 aa11.25□□□□□ -0.61
UPF1-211ENST00000600868 PSMB11A5LHX3 300 aa11.24□□□□□ -0.61
UPF1-211ENST00000600868 SSSCA1O60232 199 aa11.24□□□□□ -0.61
UPF1-211ENST00000600868 SOX15O60248 233 aa11.24□□□□□ -0.61
UPF1-211ENST00000600868 FBXO24O75426 580 aa11.24□□□□□ -0.61
UPF1-211ENST00000600868 BRI3O95415 125 aa11.24□□□□□ -0.61
UPF1-211ENST00000600868 IGLV1-40P01703 118 aa11.24□□□□□ -0.61
UPF1-211ENST00000600868 REG1AP05451 166 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms