RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 A6NJY4 79 aa4.45□□□□□ -1.7
VRK3-220ENST00000600259 MPTX1A8MV57 137 aa4.45□□□□□ -1.7
VRK3-220ENST00000600259 K7EIM0 57 aa4.45□□□□□ -1.7
VRK3-220ENST00000600259 NDUFA4O00483 81 aa4.45□□□□□ -1.7
VRK3-220ENST00000600259 EBAG9O00559 213 aa4.45□□□□□ -1.7
VRK3-220ENST00000600259 CHEK1O14757 476 aa4.45□□□□□ -1.7
VRK3-220ENST00000600259 RBFOX2O43251 390 aaKnown RBP eCLIP4.45□□□□□ -1.7
VRK3-220ENST00000600259 ZNF207O43670 478 aaKnown RBP4.45□□□□□ -1.7
VRK3-220ENST00000600259 SERPINE2P07093 398 aa4.45□□□□□ -1.7
VRK3-220ENST00000600259 CTSGP08311 255 aa4.45□□□□□ -1.7
VRK3-220ENST00000600259 FGF2P09038 288 aa4.45□□□□□ -1.7
VRK3-220ENST00000600259 HSMCR30P0CW71 290 aa4.45□□□□□ -1.7
VRK3-220ENST00000600259 RBMY1A1P0DJD3 496 aaKnown RBP4.45□□□□□ -1.7
VRK3-220ENST00000600259 RBMY1CP0DJD4 496 aa4.45□□□□□ -1.7
VRK3-220ENST00000600259 PTHLHP12272 177 aa4.45□□□□□ -1.7
VRK3-220ENST00000600259 DEFA4P12838 97 aa4.45□□□□□ -1.7
VRK3-220ENST00000600259 CD36P16671 472 aa4.45□□□□□ -1.7
VRK3-220ENST00000600259 CRHBPP24387 322 aa4.45□□□□□ -1.7
VRK3-220ENST00000600259 PSMA1P25786 263 aaKnown RBP4.45□□□□□ -1.7
VRK3-220ENST00000600259 TALDO1P37837 337 aa4.45□□□□□ -1.7
VRK3-220ENST00000600259 RANBP1P43487 201 aa4.45□□□□□ -1.7
VRK3-220ENST00000600259 RBMY1FQ15415 496 aaKnown RBP4.45□□□□□ -1.7
VRK3-220ENST00000600259 RBMS2Q15434 407 aaKnown RBP4.45□□□□□ -1.7
VRK3-220ENST00000600259 MSMO1Q15800 293 aa4.45□□□□□ -1.7
VRK3-220ENST00000600259 LAMTOR1Q6IAA8 161 aa4.45□□□□□ -1.7
VRK3-220ENST00000600259 GVQW1Q8N7I0 195 aa4.45□□□□□ -1.7
VRK3-220ENST00000600259 OR11H2Q8NH07 326 aa4.45□□□□□ -1.7
VRK3-220ENST00000600259 CD300LFQ8TDQ1 290 aa4.45□□□□□ -1.7
VRK3-220ENST00000600259 SCARB1Q8WTV0 552 aa4.45□□□□□ -1.7
VRK3-220ENST00000600259 NUDCD2Q8WVJ2 157 aa4.45□□□□□ -1.7
VRK3-220ENST00000600259 ATP6V0BQ99437 205 aa4.45□□□□□ -1.7
VRK3-220ENST00000600259 RNF2Q99496 336 aa4.45□□□□□ -1.7
VRK3-220ENST00000600259 ACOT13Q9NPJ3 140 aa4.45□□□□□ -1.7
VRK3-220ENST00000600259 DAZ1Q9NQZ3 744 aaKnown RBP4.45□□□□□ -1.7
VRK3-220ENST00000600259 FBXL17Q9UF56 701 aa4.45□□□□□ -1.7
VRK3-220ENST00000600259 ANXA10Q9UJ72 324 aa4.45□□□□□ -1.7
VRK3-220ENST00000600259 MUC4Q99102 2169 aa4.44□□□□□ -1.7
VRK3-220ENST00000600259 IGHV3-21A0A0B4J1V1 117 aa4.44□□□□□ -1.7
VRK3-220ENST00000600259 METTL21EPA6NDL7 271 aa4.44□□□□□ -1.7
VRK3-220ENST00000600259 TMEM235A6NFC5 223 aa4.44□□□□□ -1.7
VRK3-220ENST00000600259 C15orf62A8K5M9 175 aa4.44□□□□□ -1.7
VRK3-220ENST00000600259 RTL8CO15255 209 aa4.44□□□□□ -1.7
VRK3-220ENST00000600259 DEFB4AO15263 64 aa4.44□□□□□ -1.7
VRK3-220ENST00000600259 IFNA4P05014 189 aa4.44□□□□□ -1.7
VRK3-220ENST00000600259 OR13C7P0DN81 318 aa4.44□□□□□ -1.7
VRK3-220ENST00000600259 MED14OSP0DP75 135 aa4.44□□□□□ -1.7
VRK3-220ENST00000600259 TAS2R31P59538 309 aa4.44□□□□□ -1.7
VRK3-220ENST00000600259 ARL6IP1Q15041 203 aa4.44□□□□□ -1.7
VRK3-220ENST00000600259 RCN1Q15293 331 aa4.44□□□□□ -1.7
VRK3-220ENST00000600259 SLC25A24Q6NUK1 477 aa4.44□□□□□ -1.7
VRK3-220ENST00000600259 SPSB3Q6PJ21 355 aa4.44□□□□□ -1.7
VRK3-220ENST00000600259 LINC00336Q6ZUF6 198 aa4.44□□□□□ -1.7
VRK3-220ENST00000600259 SPAG16Q8N0X2 631 aa4.44□□□□□ -1.7
VRK3-220ENST00000600259 CADM3Q8N126 398 aa4.44□□□□□ -1.7
VRK3-220ENST00000600259 LILRB2Q8N423 598 aa4.44□□□□□ -1.7
VRK3-220ENST00000600259 GDPD1Q8N9F7 314 aa4.44□□□□□ -1.7
VRK3-220ENST00000600259 Q8NAQ8 132 aa4.44□□□□□ -1.7
VRK3-220ENST00000600259 C2CD4CQ8TF44 421 aa4.44□□□□□ -1.7
VRK3-220ENST00000600259 BSCL2Q96G97 398 aaPredicted RBP4.44□□□□□ -1.7
VRK3-220ENST00000600259 OR10C1Q96KK4 312 aa4.44□□□□□ -1.7
VRK3-220ENST00000600259 AIFM2Q9BRQ8 373 aa4.44□□□□□ -1.7
VRK3-220ENST00000600259 RHPN1-AS1Q9BWJ2 59 aa4.44□□□□□ -1.7
VRK3-220ENST00000600259 QTRT1Q9BXR0 403 aaKnown RBP4.44□□□□□ -1.7
VRK3-220ENST00000600259 MFFQ9GZY8 342 aa4.44□□□□□ -1.7
VRK3-220ENST00000600259 ATG5Q9H1Y0 275 aa4.44□□□□□ -1.7
VRK3-220ENST00000600259 HRH4Q9H3N8 390 aa4.44□□□□□ -1.7
VRK3-220ENST00000600259 NDUFA4L2Q9NRX3 87 aa4.44□□□□□ -1.7
VRK3-220ENST00000600259 SCN3BQ9NY72 215 aa4.44□□□□□ -1.7
VRK3-220ENST00000600259 C21orf62Q9NYP8 219 aa4.44□□□□□ -1.7
VRK3-220ENST00000600259 THYN1Q9P016 225 aa4.44□□□□□ -1.7
VRK3-220ENST00000600259 F11RQ9Y624 299 aaKnown RBP4.44□□□□□ -1.7
VRK3-220ENST00000600259 IGHV7-4-1A0A0J9YVY3 117 aa4.43□□□□□ -1.7
VRK3-220ENST00000600259 TRDV1A0A1B0GX56 115 aa4.43□□□□□ -1.7
VRK3-220ENST00000600259 IGLL5B9A064 214 aa4.43□□□□□ -1.7
VRK3-220ENST00000600259 SULT1C2O00338 296 aa4.43□□□□□ -1.7
VRK3-220ENST00000600259 PDCD5O14737 125 aa4.43□□□□□ -1.7
VRK3-220ENST00000600259 TNFSF12O43508 249 aa4.43□□□□□ -1.7
VRK3-220ENST00000600259 RGS10O43665 173 aa4.43□□□□□ -1.7
VRK3-220ENST00000600259 HPRT1P00492 218 aa4.43□□□□□ -1.7
VRK3-220ENST00000600259 TRAPPC2P0DI81 140 aa4.43□□□□□ -1.7
VRK3-220ENST00000600259 TRAPPC2BP0DI82 140 aa4.43□□□□□ -1.7
VRK3-220ENST00000600259 NQO2P16083 231 aa4.43□□□□□ -1.7
VRK3-220ENST00000600259 RAB3BP20337 219 aa4.43□□□□□ -1.7
VRK3-220ENST00000600259 FCGR2CP31995 323 aa4.43□□□□□ -1.7
VRK3-220ENST00000600259 CMC4P56277 68 aaPredicted RBP4.43□□□□□ -1.7
VRK3-220ENST00000600259 LCE2CQ5TA81 110 aa4.43□□□□□ -1.7
VRK3-220ENST00000600259 PRSS48Q7RTY5 328 aa4.43□□□□□ -1.7
VRK3-220ENST00000600259 ZBTB34Q8NCN2 500 aa4.43□□□□□ -1.7
VRK3-220ENST00000600259 OR1L8Q8NGR8 309 aa4.43□□□□□ -1.7
VRK3-220ENST00000600259 DGCR14Q96DF8 476 aaKnown RBP4.43□□□□□ -1.7
VRK3-220ENST00000600259 C20orf24Q9BUV8 137 aa4.43□□□□□ -1.7
VRK3-220ENST00000600259 COMMD5Q9GZQ3 224 aa4.43□□□□□ -1.7
VRK3-220ENST00000600259 PLEKHA2Q9HB19 425 aa4.43□□□□□ -1.7
VRK3-220ENST00000600259 HRASLSQ9HDD0 168 aa4.43□□□□□ -1.7
VRK3-220ENST00000600259 TMEM140Q9NV12 185 aa4.43□□□□□ -1.7
VRK3-220ENST00000600259 TPRKBQ9Y3C4 175 aa4.43□□□□□ -1.7
VRK3-220ENST00000600259 HSPG2P98160 4391 aa4.43□□□□□ -1.7
VRK3-220ENST00000600259 ELOA3CA0A087WX78 387 aaPredicted RBP4.42□□□□□ -1.7
VRK3-220ENST00000600259 IGHV3-49A0A0A0MS15 119 aa4.42□□□□□ -1.7
VRK3-220ENST00000600259 SMIM30A4D0T7 59 aa4.42□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms