RNA–Protein interactions for RNA: ENST00000598201.5

SHKBP1-216, Transcript of SH3KBP1 binding protein 1, human

TSL 2

Gene SHKBP1, Length 2,069 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHKBP1-216	ENST00000598201	MBD3L1	Q8WWY6	194 aa		13.78	□□□□□ -0.2
SHKBP1-216	ENST00000598201	TNFRSF14	Q92956	283 aa		13.78	□□□□□ -0.2
SHKBP1-216	ENST00000598201	ENY2	Q9NPA8	101 aa		13.78	□□□□□ -0.2
SHKBP1-216	ENST00000598201	HBE1	P02100	147 aa		13.77	□□□□□ -0.21
SHKBP1-216	ENST00000598201	LIPF	P07098	398 aa		13.77	□□□□□ -0.21
SHKBP1-216	ENST00000598201	NPY1R	P25929	384 aa		13.77	□□□□□ -0.21
SHKBP1-216	ENST00000598201	IL3RA	P26951	378 aa		13.77	□□□□□ -0.21
SHKBP1-216	ENST00000598201	PRRX1	P54821	245 aa		13.77	□□□□□ -0.21
SHKBP1-216	ENST00000598201	FGF8	P55075	233 aa	Predicted RBP	13.77	□□□□□ -0.21
SHKBP1-216	ENST00000598201	CLDND2	Q8NHS1	167 aa		13.77	□□□□□ -0.21
SHKBP1-216	ENST00000598201	PLEKHA3	Q9HB20	300 aa		13.77	□□□□□ -0.21
SHKBP1-216	ENST00000598201	CELSR2	Q9HCU4	2923 aa		13.76	□□□□□ -0.21
SHKBP1-216	ENST00000598201	SMCO3	A2RU48	225 aa		13.76	□□□□□ -0.21
SHKBP1-216	ENST00000598201	BUB1B-PAK6	H3BSN5	160 aa		13.76	□□□□□ -0.21
SHKBP1-216	ENST00000598201	SCAF4	O95104	1147 aa	Known RBP	13.76	□□□□□ -0.21
SHKBP1-216	ENST00000598201	S100A6	P06703	90 aa		13.76	□□□□□ -0.21
SHKBP1-216	ENST00000598201	RAB11A	P62491	216 aa		13.76	□□□□□ -0.21
SHKBP1-216	ENST00000598201	TREML4	Q6UXN2	200 aa		13.76	□□□□□ -0.21
SHKBP1-216	ENST00000598201	ZNF600	Q6ZNG1	722 aa		13.76	□□□□□ -0.21
SHKBP1-216	ENST00000598201	OR10W1	Q8NGF6	305 aa		13.76	□□□□□ -0.21
SHKBP1-216	ENST00000598201	OR4P4	Q8NGL7	312 aa		13.76	□□□□□ -0.21
SHKBP1-216	ENST00000598201	AKAP6	Q13023	2319 aa		13.76	□□□□□ -0.21
SHKBP1-216	ENST00000598201		E7EUB6	86 aa		13.76	□□□□□ -0.21
SHKBP1-216	ENST00000598201	ARF6	P62330	175 aa		13.76	□□□□□ -0.21
SHKBP1-216	ENST00000598201	RPL8	P62917	257 aa	Known RBP	13.76	□□□□□ -0.21
SHKBP1-216	ENST00000598201	FFAR4	Q5NUL3	377 aa		13.76	□□□□□ -0.21
SHKBP1-216	ENST00000598201	PNKD	Q8N490	385 aa		13.76	□□□□□ -0.21
SHKBP1-216	ENST00000598201	BEND2	Q8NDZ0	799 aa		13.76	□□□□□ -0.21
SHKBP1-216	ENST00000598201	OR5B3	Q8NH48	314 aa		13.76	□□□□□ -0.21
SHKBP1-216	ENST00000598201	C1orf159	Q96HA4	380 aa		13.76	□□□□□ -0.21
SHKBP1-216	ENST00000598201	GGACT	Q9BVM4	153 aa		13.76	□□□□□ -0.21
SHKBP1-216	ENST00000598201	SSBP3	Q9BWW4	388 aa	Predicted RBP	13.76	□□□□□ -0.21
SHKBP1-216	ENST00000598201	SLC35B3	Q9H1N7	401 aa		13.76	□□□□□ -0.21
SHKBP1-216	ENST00000598201	FKBP11	Q9NYL4	201 aa		13.76	□□□□□ -0.21
SHKBP1-216	ENST00000598201	HECTD1	Q9ULT8	2610 aa		13.76	□□□□□ -0.21
SHKBP1-216	ENST00000598201	ZNF98	A6NK75	572 aa		13.75	□□□□□ -0.21
SHKBP1-216	ENST00000598201	SNAPIN	O95295	136 aa		13.75	□□□□□ -0.21
SHKBP1-216	ENST00000598201	OR13C7	P0DN81	318 aa		13.75	□□□□□ -0.21
SHKBP1-216	ENST00000598201	MC5R	P33032	325 aa		13.75	□□□□□ -0.21
SHKBP1-216	ENST00000598201	RAB13	P51153	203 aa		13.75	□□□□□ -0.21
SHKBP1-216	ENST00000598201	DLK1	P80370	383 aa		13.75	□□□□□ -0.21
SHKBP1-216	ENST00000598201	ICAM4	Q14773	271 aa		13.75	□□□□□ -0.21
SHKBP1-216	ENST00000598201	ARSJ	Q5FYB0	599 aa	Predicted RBP	13.75	□□□□□ -0.21
SHKBP1-216	ENST00000598201	TMEM167A	Q8TBQ9	72 aa		13.75	□□□□□ -0.21
SHKBP1-216	ENST00000598201	TPSG1	Q9NRR2	321 aa		13.75	□□□□□ -0.21
SHKBP1-216	ENST00000598201	KPTN	Q9Y664	436 aa		13.75	□□□□□ -0.21
SHKBP1-216	ENST00000598201	ENSA	O43768	121 aa	Known RBP	13.75	□□□□□ -0.21
SHKBP1-216	ENST00000598201	DEFA4	P12838	97 aa		13.75	□□□□□ -0.21
SHKBP1-216	ENST00000598201	GPR6	P46095	362 aa	Predicted RBP	13.75	□□□□□ -0.21
SHKBP1-216	ENST00000598201	LDLRAD2	Q5SZI1	272 aa		13.75	□□□□□ -0.21
SHKBP1-216	ENST00000598201	ZNF709	Q8N972	641 aa		13.75	□□□□□ -0.21
SHKBP1-216	ENST00000598201	SIRT7	Q9NRC8	400 aa		13.75	□□□□□ -0.21
SHKBP1-216	ENST00000598201	NDUFA4L2	Q9NRX3	87 aa		13.75	□□□□□ -0.21
SHKBP1-216	ENST00000598201	CENPE	Q02224	2701 aa		13.75	□□□□□ -0.21
SHKBP1-216	ENST00000598201	BAHCC1	Q9P281	2608 aa		13.74	□□□□□ -0.21
SHKBP1-216	ENST00000598201	NBPF19	A0A087WUL8	3843 aa		13.74	□□□□□ -0.21
SHKBP1-216	ENST00000598201	LOC105371242	A0A075B767	164 aa		13.74	□□□□□ -0.21
SHKBP1-216	ENST00000598201	MAP1LC3B2	A6NCE7	125 aa		13.74	□□□□□ -0.21
SHKBP1-216	ENST00000598201	SLC25A17	O43808	307 aa		13.74	□□□□□ -0.21
SHKBP1-216	ENST00000598201	FBP1	P09467	338 aa		13.74	□□□□□ -0.21
SHKBP1-216	ENST00000598201	USF1	P22415	310 aa	Predicted RBP	13.74	□□□□□ -0.21
SHKBP1-216	ENST00000598201	MRGPRG-AS1	Q2M3A8	158 aa		13.74	□□□□□ -0.21
SHKBP1-216	ENST00000598201	ZNF506	Q5JVG8	444 aa		13.74	□□□□□ -0.21
SHKBP1-216	ENST00000598201	C10orf55	Q5SWW7	151 aa		13.74	□□□□□ -0.21
SHKBP1-216	ENST00000598201	TMEM88	Q6PEY1	159 aa		13.74	□□□□□ -0.21
SHKBP1-216	ENST00000598201	OR10G4	Q8NGN3	311 aa		13.74	□□□□□ -0.21
SHKBP1-216	ENST00000598201	OR10G9	Q8NGN4	311 aa		13.74	□□□□□ -0.21
SHKBP1-216	ENST00000598201	OR10G7	Q8NGN6	311 aa		13.74	□□□□□ -0.21
SHKBP1-216	ENST00000598201	RXFP4	Q8TDU9	374 aa		13.74	□□□□□ -0.21
SHKBP1-216	ENST00000598201	MGST2	Q99735	147 aa		13.74	□□□□□ -0.21
SHKBP1-216	ENST00000598201	MAP1LC3B	Q9GZQ8	125 aa		13.74	□□□□□ -0.21
SHKBP1-216	ENST00000598201	ZNF430	Q9H8G1	570 aa	Predicted RBP	13.74	□□□□□ -0.21
SHKBP1-216	ENST00000598201	SLC25A22	Q9H936	323 aa		13.74	□□□□□ -0.21
SHKBP1-216	ENST00000598201	GNG13	Q9P2W3	67 aa		13.74	□□□□□ -0.21
SHKBP1-216	ENST00000598201	IGHV1-3	A0A0C4DH29	117 aa		13.73	□□□□□ -0.21
SHKBP1-216	ENST00000598201	hCG_1809904	A0A1W2PP81	198 aa		13.73	□□□□□ -0.21
SHKBP1-216	ENST00000598201		A0A1W2PPE2	198 aa		13.73	□□□□□ -0.21
SHKBP1-216	ENST00000598201		A0A1W2PR64	198 aa		13.73	□□□□□ -0.21
SHKBP1-216	ENST00000598201		A0A1W2PRV1	198 aa		13.73	□□□□□ -0.21
SHKBP1-216	ENST00000598201	CGB1	A6NKQ9	187 aa		13.73	□□□□□ -0.21
SHKBP1-216	ENST00000598201	HMGB3	O15347	200 aa	Known RBP	13.73	□□□□□ -0.21
SHKBP1-216	ENST00000598201	CLRN3	Q8NCR9	226 aa		13.73	□□□□□ -0.21
SHKBP1-216	ENST00000598201	COMMD5	Q9GZQ3	224 aa		13.73	□□□□□ -0.21
SHKBP1-216	ENST00000598201	C17orf112	F2Z3M2	114 aa		13.73	□□□□□ -0.21
SHKBP1-216	ENST00000598201	LY6L	H3BQJ8	138 aa		13.73	□□□□□ -0.21
SHKBP1-216	ENST00000598201	SRP19	P09132	144 aa	Known RBP	13.73	□□□□□ -0.21
SHKBP1-216	ENST00000598201	CNTFR	P26992	372 aa		13.73	□□□□□ -0.21
SHKBP1-216	ENST00000598201	EFNA4	P52798	201 aa		13.73	□□□□□ -0.21
SHKBP1-216	ENST00000598201	GCSAML	Q5JQS6	135 aa		13.73	□□□□□ -0.21
SHKBP1-216	ENST00000598201	MOB3B	Q86TA1	216 aa		13.73	□□□□□ -0.21
SHKBP1-216	ENST00000598201	CBLN2	Q8IUK8	224 aa		13.73	□□□□□ -0.21
SHKBP1-216	ENST00000598201	OR4A5	Q8NH83	315 aa		13.73	□□□□□ -0.21
SHKBP1-216	ENST00000598201	VSTM2A	Q8TAG5	236 aa		13.73	□□□□□ -0.21
SHKBP1-216	ENST00000598201	SMDT1	Q9H4I9	107 aa		13.73	□□□□□ -0.21
SHKBP1-216	ENST00000598201	SLC39A9	Q9NUM3	307 aa		13.73	□□□□□ -0.21
SHKBP1-216	ENST00000598201	LSM4	Q9Y4Z0	139 aa	Known RBP	13.73	□□□□□ -0.21
SHKBP1-216	ENST00000598201	INSIG2	Q9Y5U4	225 aa		13.73	□□□□□ -0.21
SHKBP1-216	ENST00000598201	LOC102723971	A0A1B0GUV8	181 aa		13.72	□□□□□ -0.21
SHKBP1-216	ENST00000598201	RNASE2	P10153	161 aa	Known RBP	13.72	□□□□□ -0.21
SHKBP1-216	ENST00000598201	BSX	Q3C1V8	233 aa		13.72	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms