RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 S4R3C0 116 aa9.37□□□□□ -0.91
TRIM28-212ENST00000597995 LOC102724200A0A096LPH7 203 aaPredicted RBP9.36□□□□□ -0.91
TRIM28-212ENST00000597995 IGLC7A0M8Q6 106 aa9.36□□□□□ -0.91
TRIM28-212ENST00000597995 A8MWP6 167 aa9.36□□□□□ -0.91
TRIM28-212ENST00000597995 IGHV3-23P01764 117 aa9.36□□□□□ -0.91
TRIM28-212ENST00000597995 RLN1P04808 185 aa9.36□□□□□ -0.91
TRIM28-212ENST00000597995 EDN2P20800 178 aa9.36□□□□□ -0.91
TRIM28-212ENST00000597995 ALDH3B2P48448 385 aa9.36□□□□□ -0.91
TRIM28-212ENST00000597995 RORCP51449 518 aa9.36□□□□□ -0.91
TRIM28-212ENST00000597995 FAM106AQ4KMX7 169 aa9.36□□□□□ -0.91
TRIM28-212ENST00000597995 GPR107Q5VW38 600 aa9.36□□□□□ -0.91
TRIM28-212ENST00000597995 TMEM61Q8N0U2 210 aa9.36□□□□□ -0.91
TRIM28-212ENST00000597995 OR52B4Q8NGK2 314 aa9.36□□□□□ -0.91
TRIM28-212ENST00000597995 FCAMRQ8WWV6 532 aa9.36□□□□□ -0.91
TRIM28-212ENST00000597995 CCDC140Q96MF4 163 aa9.36□□□□□ -0.91
TRIM28-212ENST00000597995 SCPEP1Q9HB40 452 aa9.36□□□□□ -0.91
TRIM28-212ENST00000597995 HRASLSQ9HDD0 168 aa9.36□□□□□ -0.91
TRIM28-212ENST00000597995 TMEM140Q9NV12 185 aa9.36□□□□□ -0.91
TRIM28-212ENST00000597995 IGLV11-55A0A075B6I3 123 aa9.35□□□□□ -0.91
TRIM28-212ENST00000597995 TRAV25A0A0B4J276 109 aa9.35□□□□□ -0.91
TRIM28-212ENST00000597995 TMEM213A2RRL7 107 aa9.35□□□□□ -0.91
TRIM28-212ENST00000597995 DPPA5A6NC42 116 aa9.35□□□□□ -0.91
TRIM28-212ENST00000597995 LY6G6CO95867 125 aa9.35□□□□□ -0.91
TRIM28-212ENST00000597995 DHFRP00374 187 aa9.35□□□□□ -0.91
TRIM28-212ENST00000597995 HIST1H1BP16401 226 aaKnown RBP9.35□□□□□ -0.91
TRIM28-212ENST00000597995 F2RP25116 425 aa9.35□□□□□ -0.91
TRIM28-212ENST00000597995 ARL3P36405 182 aa9.35□□□□□ -0.91
TRIM28-212ENST00000597995 LPAR6P43657 344 aa9.35□□□□□ -0.91
TRIM28-212ENST00000597995 CLEC19AQ6UXS0 136 aa9.35□□□□□ -0.91
TRIM28-212ENST00000597995 WFDC3Q8IUB2 231 aa9.35□□□□□ -0.91
TRIM28-212ENST00000597995 UXS1Q8NBZ7 420 aa9.35□□□□□ -0.91
TRIM28-212ENST00000597995 OR10W1Q8NGF6 305 aa9.35□□□□□ -0.91
TRIM28-212ENST00000597995 OR6F1Q8NGZ6 308 aa9.35□□□□□ -0.91
TRIM28-212ENST00000597995 CD300LFQ8TDQ1 290 aa9.35□□□□□ -0.91
TRIM28-212ENST00000597995 CACNG8Q8WXS5 425 aa9.35□□□□□ -0.91
TRIM28-212ENST00000597995 AIFM2Q9BRQ8 373 aa9.35□□□□□ -0.91
TRIM28-212ENST00000597995 COMMD9Q9P000 198 aa9.35□□□□□ -0.91
TRIM28-212ENST00000597995 MLXQ9UH92 298 aa9.35□□□□□ -0.91
TRIM28-212ENST00000597995 TEX50A0A1B0GTY4 177 aa9.34□□□□□ -0.91
TRIM28-212ENST00000597995 SMIM31A0A1B0GVY4 71 aa9.34□□□□□ -0.91
TRIM28-212ENST00000597995 ZNF320A2RRD8 509 aa9.34□□□□□ -0.91
TRIM28-212ENST00000597995 CXorf65A6NEN9 183 aa9.34□□□□□ -0.91
TRIM28-212ENST00000597995 NUPR2A6NF83 97 aa9.34□□□□□ -0.91
TRIM28-212ENST00000597995 MFSD2BA6NFX1 497 aa9.34□□□□□ -0.91
TRIM28-212ENST00000597995 GPR31O00270 319 aa9.34□□□□□ -0.91
TRIM28-212ENST00000597995 ZNF182P17025 639 aaPredicted RBP9.34□□□□□ -0.91
TRIM28-212ENST00000597995 RCVRNP35243 200 aa9.34□□□□□ -0.91
TRIM28-212ENST00000597995 PHLDA2Q53GA4 152 aa9.34□□□□□ -0.91
TRIM28-212ENST00000597995 RNASE12Q5GAN4 147 aaKnown RBP9.34□□□□□ -0.91
TRIM28-212ENST00000597995 DMBX1Q8NFW5 382 aa9.34□□□□□ -0.91
TRIM28-212ENST00000597995 BORCS5Q969J3 196 aa9.34□□□□□ -0.91
TRIM28-212ENST00000597995 MARC2Q969Z3 335 aa9.34□□□□□ -0.91
TRIM28-212ENST00000597995 EEF1AKMT3Q96AZ1 226 aa9.34□□□□□ -0.91
TRIM28-212ENST00000597995 DGCR14Q96DF8 476 aaKnown RBP9.34□□□□□ -0.91
TRIM28-212ENST00000597995 ABHD1Q96SE0 405 aa9.34□□□□□ -0.91
TRIM28-212ENST00000597995 MRPS26Q9BYN8 205 aaKnown RBP9.34□□□□□ -0.91
TRIM28-212ENST00000597995 MIXL1Q9H2W2 232 aa9.34□□□□□ -0.91
TRIM28-212ENST00000597995 KLK11Q9UBX7 282 aa9.34□□□□□ -0.91
TRIM28-212ENST00000597995 TP53TG1Q9Y2A0 90 aa9.34□□□□□ -0.91
TRIM28-212ENST00000597995 TRBV7-1A0A0A6YYK4 115 aa9.33□□□□□ -0.92
TRIM28-212ENST00000597995 MARCH11A6NNE9 402 aa9.33□□□□□ -0.92
TRIM28-212ENST00000597995 M0QYG6 137 aa9.33□□□□□ -0.92
TRIM28-212ENST00000597995 KRASP01116 189 aa9.33□□□□□ -0.92
TRIM28-212ENST00000597995 IGKV1-39P01597 117 aa9.33□□□□□ -0.92
TRIM28-212ENST00000597995 IGKV1D-39P04432 117 aa9.33□□□□□ -0.92
TRIM28-212ENST00000597995 FGF2P09038 288 aa9.33□□□□□ -0.92
TRIM28-212ENST00000597995 C8orf88P0DMB2 117 aa9.33□□□□□ -0.92
TRIM28-212ENST00000597995 ATF4P18848 351 aaPredicted RBP9.33□□□□□ -0.92
TRIM28-212ENST00000597995 G6PCP35575 357 aa9.33□□□□□ -0.92
TRIM28-212ENST00000597995 WT1-ASQ06250 92 aa9.33□□□□□ -0.92
TRIM28-212ENST00000597995 TNFRSF9Q07011 255 aa9.33□□□□□ -0.92
TRIM28-212ENST00000597995 SPCS2Q15005 226 aa9.33□□□□□ -0.92
TRIM28-212ENST00000597995 TM4SF20Q53R12 229 aa9.33□□□□□ -0.92
TRIM28-212ENST00000597995 Q6ZWC4 215 aa9.33□□□□□ -0.92
TRIM28-212ENST00000597995 CADM3Q8N126 398 aa9.33□□□□□ -0.92
TRIM28-212ENST00000597995 OR52I2Q8NH67 350 aa9.33□□□□□ -0.92
TRIM28-212ENST00000597995 CXorf58Q96LI9 332 aa9.33□□□□□ -0.92
TRIM28-212ENST00000597995 QTRT1Q9BXR0 403 aaKnown RBP9.33□□□□□ -0.92
TRIM28-212ENST00000597995 NSG2Q9Y328 171 aa9.33□□□□□ -0.92
TRIM28-212ENST00000597995 DBX1A6NMT0 343 aa9.32□□□□□ -0.92
TRIM28-212ENST00000597995 FAM25AB3EWG3 89 aa9.32□□□□□ -0.92
TRIM28-212ENST00000597995 FAM25CB3EWG5 89 aa9.32□□□□□ -0.92
TRIM28-212ENST00000597995 FAM25GB3EWG6 89 aa9.32□□□□□ -0.92
TRIM28-212ENST00000597995 SCAF4O95104 1147 aaKnown RBP9.32□□□□□ -0.92
TRIM28-212ENST00000597995 BMI1P35226 326 aa9.32□□□□□ -0.92
TRIM28-212ENST00000597995 MFAP2P55001 183 aa9.32□□□□□ -0.92
TRIM28-212ENST00000597995 ELLP55199 621 aaPredicted RBP9.32□□□□□ -0.92
TRIM28-212ENST00000597995 UCP3P55916 312 aa9.32□□□□□ -0.92
TRIM28-212ENST00000597995 TSPAN5P62079 268 aa9.32□□□□□ -0.92
TRIM28-212ENST00000597995 MZT2AQ6P582 158 aa9.32□□□□□ -0.92
TRIM28-212ENST00000597995 CEMP1Q6PRD7 247 aaPredicted RBP9.32□□□□□ -0.92
TRIM28-212ENST00000597995 TBC1D26Q86UD7 250 aa9.32□□□□□ -0.92
TRIM28-212ENST00000597995 CMTM1Q8IZ96 169 aa9.32□□□□□ -0.92
TRIM28-212ENST00000597995 SRSF8Q9BRL6 282 aaKnown RBP9.32□□□□□ -0.92
TRIM28-212ENST00000597995 COMMD5Q9GZQ3 224 aa9.32□□□□□ -0.92
TRIM28-212ENST00000597995 NDUFA4L2Q9NRX3 87 aa9.32□□□□□ -0.92
TRIM28-212ENST00000597995 MRPL27Q9P0M9 148 aaKnown RBP9.32□□□□□ -0.92
TRIM28-212ENST00000597995 EXTL2Q9UBQ6 330 aa9.32□□□□□ -0.92
TRIM28-212ENST00000597995 A0A0J9YWU9 116 aa9.31□□□□□ -0.92
TRIM28-212ENST00000597995 UBE2CO00762 179 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms