RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 PIGPP57054 158 aa12.4□□□□□ -0.42
TRIM28-206ENST00000595974 SYNJ2BPP57105 145 aa12.4□□□□□ -0.42
TRIM28-206ENST00000595974 SCGB2B2Q4G0G5 96 aa12.4□□□□□ -0.42
TRIM28-206ENST00000595974 OR5B3Q8NH48 314 aa12.4□□□□□ -0.42
TRIM28-206ENST00000595974 ZFAND1Q8TCF1 268 aa12.4□□□□□ -0.42
TRIM28-206ENST00000595974 SEC22AQ96IW7 307 aa12.4□□□□□ -0.42
TRIM28-206ENST00000595974 FKBP11Q9NYL4 201 aa12.4□□□□□ -0.42
TRIM28-206ENST00000595974 TEX50A0A1B0GTY4 177 aa12.39□□□□□ -0.43
TRIM28-206ENST00000595974 C15orf61A6NNL5 157 aa12.39□□□□□ -0.43
TRIM28-206ENST00000595974 CYB5BO43169 146 aa12.39□□□□□ -0.43
TRIM28-206ENST00000595974 GSTZ1O43708 216 aaPredicted RBP12.39□□□□□ -0.43
TRIM28-206ENST00000595974 SERPINE2P07093 398 aa12.39□□□□□ -0.43
TRIM28-206ENST00000595974 AKAIN1P0CW23 69 aa12.39□□□□□ -0.43
TRIM28-206ENST00000595974 PI3P19957 117 aa12.39□□□□□ -0.43
TRIM28-206ENST00000595974 GDPD1Q8N9F7 314 aa12.39□□□□□ -0.43
TRIM28-206ENST00000595974 CCDC71LQ8N9Z2 235 aa12.39□□□□□ -0.43
TRIM28-206ENST00000595974 LSM10Q969L4 123 aaKnown RBP12.39□□□□□ -0.43
TRIM28-206ENST00000595974 EEF1AKMT3Q96AZ1 226 aa12.39□□□□□ -0.43
TRIM28-206ENST00000595974 B9D2Q9BPU9 175 aa12.39□□□□□ -0.43
TRIM28-206ENST00000595974 RBM38Q9H0Z9 239 aaKnown RBP12.39□□□□□ -0.43
TRIM28-206ENST00000595974 NDUFA4L2Q9NRX3 87 aa12.39□□□□□ -0.43
TRIM28-206ENST00000595974 TMEM14BQ9NUH8 114 aa12.39□□□□□ -0.43
TRIM28-206ENST00000595974 COPZ2Q9P299 210 aa12.39□□□□□ -0.43
TRIM28-206ENST00000595974 NSG2Q9Y328 171 aa12.39□□□□□ -0.43
TRIM28-206ENST00000595974 LSM4Q9Y4Z0 139 aaKnown RBP12.39□□□□□ -0.43
TRIM28-206ENST00000595974 OR51B2Q9Y5P1 312 aa12.39□□□□□ -0.43
TRIM28-206ENST00000595974 DISC1C4P0D8 188 aa12.38□□□□□ -0.43
TRIM28-206ENST00000595974 NDUFB8O95169 186 aa12.38□□□□□ -0.43
TRIM28-206ENST00000595974 IGKV1-39P01597 117 aa12.38□□□□□ -0.43
TRIM28-206ENST00000595974 IGLV1-51P01701 117 aa12.38□□□□□ -0.43
TRIM28-206ENST00000595974 IGKV1D-39P04432 117 aa12.38□□□□□ -0.43
TRIM28-206ENST00000595974 SPNP16150 400 aa12.38□□□□□ -0.43
TRIM28-206ENST00000595974 TNFSF8P32971 234 aa12.38□□□□□ -0.43
TRIM28-206ENST00000595974 FAAP20Q6NZ36 180 aa12.38□□□□□ -0.43
TRIM28-206ENST00000595974 H2BFWTQ7Z2G1 175 aa12.38□□□□□ -0.43
TRIM28-206ENST00000595974 OR10W1Q8NGF6 305 aa12.38□□□□□ -0.43
TRIM28-206ENST00000595974 OR4C16Q8NGL9 310 aa12.38□□□□□ -0.43
TRIM28-206ENST00000595974 OR13C8Q8NGS7 320 aa12.38□□□□□ -0.43
TRIM28-206ENST00000595974 MRGPRFQ96AM1 343 aa12.38□□□□□ -0.43
TRIM28-206ENST00000595974 CXorf58Q96LI9 332 aa12.38□□□□□ -0.43
TRIM28-206ENST00000595974 CCDC140Q96MF4 163 aa12.38□□□□□ -0.43
TRIM28-206ENST00000595974 SOSTQ9BQB4 213 aa12.38□□□□□ -0.43
TRIM28-206ENST00000595974 SIGLEC8Q9NYZ4 499 aa12.38□□□□□ -0.43
TRIM28-206ENST00000595974 THYN1Q9P016 225 aa12.38□□□□□ -0.43
TRIM28-206ENST00000595974 PEMTQ9UBM1 199 aa12.38□□□□□ -0.43
TRIM28-206ENST00000595974 TRBV7-1A0A0A6YYK4 115 aa12.37□□□□□ -0.43
TRIM28-206ENST00000595974 FABP12A6NFH5 140 aa12.37□□□□□ -0.43
TRIM28-206ENST00000595974 ZNF701M0R085 212 aaPredicted RBP12.37□□□□□ -0.43
TRIM28-206ENST00000595974 B3GALNT1O75752 331 aa12.37□□□□□ -0.43
TRIM28-206ENST00000595974 CTSDP07339 412 aaPredicted RBP12.37□□□□□ -0.43
TRIM28-206ENST00000595974 OR13C7P0DN81 318 aa12.37□□□□□ -0.43
TRIM28-206ENST00000595974 WT1-ASQ06250 92 aa12.37□□□□□ -0.43
TRIM28-206ENST00000595974 CD69Q07108 199 aa12.37□□□□□ -0.43
TRIM28-206ENST00000595974 SURF2Q15527 256 aaPredicted RBP12.37□□□□□ -0.43
TRIM28-206ENST00000595974 IL34Q6ZMJ4 242 aa12.37□□□□□ -0.43
TRIM28-206ENST00000595974 MARCH1Q8TCQ1 289 aa12.37□□□□□ -0.43
TRIM28-206ENST00000595974 TMEM56Q96MV1 263 aa12.37□□□□□ -0.43
TRIM28-206ENST00000595974 TP53RKQ96S44 253 aa12.37□□□□□ -0.43
TRIM28-206ENST00000595974 PRRT1Q99946 306 aa12.37□□□□□ -0.43
TRIM28-206ENST00000595974 HINT2Q9BX68 163 aa12.37□□□□□ -0.43
TRIM28-206ENST00000595974 DMRT1Q9Y5R6 373 aa12.37□□□□□ -0.43
TRIM28-206ENST00000595974 DNAH9Q9NYC9 4486 aa12.37□□□□□ -0.43
TRIM28-206ENST00000595974 COL7A1Q02388 2944 aa12.36□□□□□ -0.43
TRIM28-206ENST00000595974 C3orf85A0A1B0GTC6 90 aa12.36□□□□□ -0.43
TRIM28-206ENST00000595974 ANKRD20A5PA0PJZ0 165 aa12.36□□□□□ -0.43
TRIM28-206ENST00000595974 PPP5D1E7EU14 171 aa12.36□□□□□ -0.43
TRIM28-206ENST00000595974 GGCTO75223 188 aaKnown RBP12.36□□□□□ -0.43
TRIM28-206ENST00000595974 ATG12O94817 140 aa12.36□□□□□ -0.43
TRIM28-206ENST00000595974 GP9P14770 177 aa12.36□□□□□ -0.43
TRIM28-206ENST00000595974 ARL3P36405 182 aa12.36□□□□□ -0.43
TRIM28-206ENST00000595974 OR4A16Q8NH70 328 aa12.36□□□□□ -0.43
TRIM28-206ENST00000595974 SLC2A8Q9NY64 477 aa12.36□□□□□ -0.43
TRIM28-206ENST00000595974 C14orf166Q9Y224 244 aaKnown RBP12.36□□□□□ -0.43
TRIM28-206ENST00000595974 F11RQ9Y624 299 aaKnown RBP12.36□□□□□ -0.43
TRIM28-206ENST00000595974 MFSD2BA6NFX1 497 aa12.35□□□□□ -0.43
TRIM28-206ENST00000595974 DBX1A6NMT0 343 aa12.35□□□□□ -0.43
TRIM28-206ENST00000595974 IGHV3-23P01764 117 aa12.35□□□□□ -0.43
TRIM28-206ENST00000595974 CSN3P07498 182 aa12.35□□□□□ -0.43
TRIM28-206ENST00000595974 UCP1P25874 307 aa12.35□□□□□ -0.43
TRIM28-206ENST00000595974 AKR1C2P52895 323 aa12.35□□□□□ -0.43
TRIM28-206ENST00000595974 CLEC19AQ6UXS0 136 aa12.35□□□□□ -0.43
TRIM28-206ENST00000595974 HAPLN4Q86UW8 402 aa12.35□□□□□ -0.43
TRIM28-206ENST00000595974 OR1L6Q8NGR2 347 aa12.35□□□□□ -0.43
TRIM28-206ENST00000595974 SMAD5-AS1Q9Y6J3 95 aa12.35□□□□□ -0.43
TRIM28-206ENST00000595974 S4R3C0 116 aa12.35□□□□□ -0.43
TRIM28-206ENST00000595974 S100A5P33763 92 aa12.34□□□□□ -0.43
TRIM28-206ENST00000595974 MECP2P51608 486 aaKnown RBP12.34□□□□□ -0.43
TRIM28-206ENST00000595974 TRIM16LQ309B1 348 aa12.34□□□□□ -0.43
TRIM28-206ENST00000595974 OR51S1Q8NGJ8 323 aa12.34□□□□□ -0.43
TRIM28-206ENST00000595974 ZNF502Q8TBZ5 544 aa12.34□□□□□ -0.43
TRIM28-206ENST00000595974 VN1R17PQ8TDU5 208 aa12.34□□□□□ -0.43
TRIM28-206ENST00000595974 LGALS9O00182 355 aa12.33□□□□□ -0.44
TRIM28-206ENST00000595974 IGKV1-5P01602 117 aa12.33□□□□□ -0.44
TRIM28-206ENST00000595974 HLA-AP01891 365 aaKnown RBP12.33□□□□□ -0.44
TRIM28-206ENST00000595974 P0C879 139 aa12.33□□□□□ -0.44
TRIM28-206ENST00000595974 PRCDQ00LT1 54 aa12.33□□□□□ -0.44
TRIM28-206ENST00000595974 LCN12Q6JVE5 192 aa12.33□□□□□ -0.44
TRIM28-206ENST00000595974 SLC25A24Q6NUK1 477 aa12.33□□□□□ -0.44
TRIM28-206ENST00000595974 GPHB5Q86YW7 130 aa12.33□□□□□ -0.44
TRIM28-206ENST00000595974 Q8N402 240 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 76.5 ms