RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	COL12A1	Q99715	3063 aa		12.65	□□□□□ -0.38
DDX39A-209	ENST00000589318	MAP1LC3B2	A6NCE7	125 aa		12.64	□□□□□ -0.39
DDX39A-209	ENST00000589318		H7BYZ3	331 aa		12.64	□□□□□ -0.39
DDX39A-209	ENST00000589318	SOX15	O60248	233 aa		12.64	□□□□□ -0.39
DDX39A-209	ENST00000589318	IGKV1-39	P01597	117 aa		12.64	□□□□□ -0.39
DDX39A-209	ENST00000589318	IGKV1D-39	P04432	117 aa		12.64	□□□□□ -0.39
DDX39A-209	ENST00000589318	IL6R	P08887	468 aa	Predicted RBP	12.64	□□□□□ -0.39
DDX39A-209	ENST00000589318	GALR1	P47211	349 aa		12.64	□□□□□ -0.39
DDX39A-209	ENST00000589318	CNN1	P51911	297 aa	Known RBP	12.64	□□□□□ -0.39
DDX39A-209	ENST00000589318	ZNF134	P52741	427 aa		12.64	□□□□□ -0.39
DDX39A-209	ENST00000589318	ZNF585B	Q52M93	769 aa		12.64	□□□□□ -0.39
DDX39A-209	ENST00000589318	NMS	Q5H8A3	153 aa		12.64	□□□□□ -0.39
DDX39A-209	ENST00000589318	DMRTA1	Q5VZB9	504 aa		12.64	□□□□□ -0.39
DDX39A-209	ENST00000589318	ZNF695	Q8IW36	515 aa		12.64	□□□□□ -0.39
DDX39A-209	ENST00000589318	MAP1LC3B	Q9GZQ8	125 aa		12.64	□□□□□ -0.39
DDX39A-209	ENST00000589318	RALY	Q9UKM9	306 aa	Known RBP	12.64	□□□□□ -0.39
DDX39A-209	ENST00000589318	PSG11	Q9UQ72	335 aa		12.64	□□□□□ -0.39
DDX39A-209	ENST00000589318	LINC00312	Q9Y6C7	94 aa		12.64	□□□□□ -0.39
DDX39A-209	ENST00000589318	ZNF462	Q96JM2	2506 aa		12.64	□□□□□ -0.39
DDX39A-209	ENST00000589318	CLEC18A	A5D8T8	446 aa		12.64	□□□□□ -0.39
DDX39A-209	ENST00000589318	PROP1	O75360	226 aa		12.64	□□□□□ -0.39
DDX39A-209	ENST00000589318	MMP23A	O75900	390 aa		12.64	□□□□□ -0.39
DDX39A-209	ENST00000589318	LY6H	O94772	140 aa		12.64	□□□□□ -0.39
DDX39A-209	ENST00000589318	IFNA5	P01569	189 aa		12.64	□□□□□ -0.39
DDX39A-209	ENST00000589318	RPL30	P62888	115 aa	Known RBP	12.64	□□□□□ -0.39
DDX39A-209	ENST00000589318	MEF2C	Q06413	473 aa	Predicted RBP	12.64	□□□□□ -0.39
DDX39A-209	ENST00000589318	ZNF787	Q6DD87	383 aa		12.64	□□□□□ -0.39
DDX39A-209	ENST00000589318	KCNIP4	Q6PIL6	250 aa		12.64	□□□□□ -0.39
DDX39A-209	ENST00000589318	C16orf82	Q7Z2V1	217 aa		12.64	□□□□□ -0.39
DDX39A-209	ENST00000589318	CLEC18C	Q8NCF0	446 aa		12.64	□□□□□ -0.39
DDX39A-209	ENST00000589318	PSMG3	Q9BT73	122 aa	Predicted RBP	12.64	□□□□□ -0.39
DDX39A-209	ENST00000589318	DOCK11	Q5JSL3	2073 aa		12.64	□□□□□ -0.39
DDX39A-209	ENST00000589318	hADV38S2	A0JD32	116 aa		12.63	□□□□□ -0.39
DDX39A-209	ENST00000589318	TMEM183B	Q1AE95	376 aa		12.63	□□□□□ -0.39
DDX39A-209	ENST00000589318	WDR25	Q64LD2	544 aa	Predicted RBP	12.63	□□□□□ -0.39
DDX39A-209	ENST00000589318	FAM216A	Q8WUB2	273 aa		12.63	□□□□□ -0.39
DDX39A-209	ENST00000589318	C22orf15	Q8WYQ4	148 aa		12.63	□□□□□ -0.39
DDX39A-209	ENST00000589318	RAB1B	Q9H0U4	201 aa		12.63	□□□□□ -0.39
DDX39A-209	ENST00000589318	LIN7C	Q9NUP9	197 aa	Known RBP	12.63	□□□□□ -0.39
DDX39A-209	ENST00000589318		A6NNC1	897 aa		12.62	□□□□□ -0.39
DDX39A-209	ENST00000589318	TMEM250	H0YL14	139 aa		12.62	□□□□□ -0.39
DDX39A-209	ENST00000589318	NDUFB3	O43676	98 aa		12.62	□□□□□ -0.39
DDX39A-209	ENST00000589318	IGHV3-7	P01780	117 aa		12.62	□□□□□ -0.39
DDX39A-209	ENST00000589318	VDAC1	P21796	283 aa		12.62	□□□□□ -0.39
DDX39A-209	ENST00000589318	DYNLT3	P51808	116 aa		12.62	□□□□□ -0.39
DDX39A-209	ENST00000589318	BRWD1-AS2	P59051	145 aa		12.62	□□□□□ -0.39
DDX39A-209	ENST00000589318	RPL31	P62899	125 aa	Known RBP	12.62	□□□□□ -0.39
DDX39A-209	ENST00000589318	PAFAH1B2	P68402	229 aa		12.62	□□□□□ -0.39
DDX39A-209	ENST00000589318	BSX	Q3C1V8	233 aa		12.62	□□□□□ -0.39
DDX39A-209	ENST00000589318	OR2T10	Q8NGZ9	312 aa		12.62	□□□□□ -0.39
DDX39A-209	ENST00000589318	IFI27L2	Q9H2X8	130 aa		12.62	□□□□□ -0.39
DDX39A-209	ENST00000589318	RAB9B	Q9NP90	201 aa		12.62	□□□□□ -0.39
DDX39A-209	ENST00000589318	IDI2-AS1	Q9NZ38	188 aa		12.62	□□□□□ -0.39
DDX39A-209	ENST00000589318		A0A0G2JRQ6	117 aa		12.62	□□□□□ -0.39
DDX39A-209	ENST00000589318	KBTBD11	O94819	623 aa		12.62	□□□□□ -0.39
DDX39A-209	ENST00000589318	SERPINE2	P07093	398 aa		12.62	□□□□□ -0.39
DDX39A-209	ENST00000589318	ELL	P55199	621 aa	Predicted RBP	12.62	□□□□□ -0.39
DDX39A-209	ENST00000589318	LRRC10	Q5BKY1	277 aa		12.62	□□□□□ -0.39
DDX39A-209	ENST00000589318	TMEM200B	Q69YZ2	307 aa		12.62	□□□□□ -0.39
DDX39A-209	ENST00000589318	TEX43	Q6ZNM6	134 aa		12.62	□□□□□ -0.39
DDX39A-209	ENST00000589318	SSX7	Q7RTT5	188 aa		12.62	□□□□□ -0.39
DDX39A-209	ENST00000589318	ZNF439	Q8NDP4	499 aa		12.62	□□□□□ -0.39
DDX39A-209	ENST00000589318	LEAP2	Q969E1	77 aa		12.62	□□□□□ -0.39
DDX39A-209	ENST00000589318	MS4A10	Q96PG2	267 aa		12.62	□□□□□ -0.39
DDX39A-209	ENST00000589318	MYO18B	Q8IUG5	2567 aa		12.61	□□□□□ -0.39
DDX39A-209	ENST00000589318	LINC00473	A8K010	186 aa		12.61	□□□□□ -0.39
DDX39A-209	ENST00000589318	CDKN1B	P46527	198 aa		12.61	□□□□□ -0.39
DDX39A-209	ENST00000589318	LINC00205	P59089	165 aa		12.61	□□□□□ -0.39
DDX39A-209	ENST00000589318	SERF2	P84101	59 aa		12.61	□□□□□ -0.39
DDX39A-209	ENST00000589318	PINX1	Q96BK5	328 aa	Known RBP	12.61	□□□□□ -0.39
DDX39A-209	ENST00000589318	RPUSD1	Q9UJJ7	312 aa	Known RBP	12.61	□□□□□ -0.39
DDX39A-209	ENST00000589318	RNF212B	A8MTL3	300 aa		12.6	□□□□□ -0.39
DDX39A-209	ENST00000589318	ZNF705F	A8MVS1	300 aa	Predicted RBP	12.6	□□□□□ -0.39
DDX39A-209	ENST00000589318	VENTX	O95231	258 aa		12.6	□□□□□ -0.39
DDX39A-209	ENST00000589318	ZNF705D	P0CH99	300 aa	Predicted RBP	12.6	□□□□□ -0.39
DDX39A-209	ENST00000589318	ZNF705B	P0CI00	300 aa	Predicted RBP	12.6	□□□□□ -0.39
DDX39A-209	ENST00000589318	CCL3L1	P16619	93 aa		12.6	□□□□□ -0.39
DDX39A-209	ENST00000589318	ZNF16	P17020	682 aa	Predicted RBP	12.6	□□□□□ -0.39
DDX39A-209	ENST00000589318	ADIRF	Q15847	76 aa		12.6	□□□□□ -0.39
DDX39A-209	ENST00000589318	CT45A1	Q5HYN5	189 aa		12.6	□□□□□ -0.39
DDX39A-209	ENST00000589318	PRAMEF5	Q5TYX0	476 aa		12.6	□□□□□ -0.39
DDX39A-209	ENST00000589318	ZNF841	Q6ZN19	808 aa		12.6	□□□□□ -0.39
DDX39A-209	ENST00000589318	C1orf229	Q6ZS94	237 aa	Predicted RBP	12.6	□□□□□ -0.39
DDX39A-209	ENST00000589318	CT45A3	Q8NHU0	189 aa		12.6	□□□□□ -0.39
DDX39A-209	ENST00000589318	NEU4	Q8WWR8	484 aa	Predicted RBP	12.6	□□□□□ -0.39
DDX39A-209	ENST00000589318	SMIM7	Q9BQ49	75 aa		12.6	□□□□□ -0.39
DDX39A-209	ENST00000589318	UBTD1	Q9HAC8	227 aa		12.6	□□□□□ -0.39
DDX39A-209	ENST00000589318	SPTAN1	Q13813	2472 aa	Known RBP	12.6	□□□□□ -0.39
DDX39A-209	ENST00000589318	UBR5	O95071	2799 aa	Predicted RBP	12.6	□□□□□ -0.39
DDX39A-209	ENST00000589318	ZFP92	A6NM28	416 aa		12.6	□□□□□ -0.39
DDX39A-209	ENST00000589318	RAMP3	O60896	148 aa		12.6	□□□□□ -0.39
DDX39A-209	ENST00000589318	IGKV1-5	P01602	117 aa		12.6	□□□□□ -0.39
DDX39A-209	ENST00000589318	ID3	Q02535	119 aa		12.6	□□□□□ -0.39
DDX39A-209	ENST00000589318	TMEM30B	Q3MIR4	351 aa		12.6	□□□□□ -0.39
DDX39A-209	ENST00000589318	SCGB1C1	Q8TD33	95 aa		12.6	□□□□□ -0.39
DDX39A-209	ENST00000589318	ORAOV1	Q8WV07	137 aa		12.6	□□□□□ -0.39
DDX39A-209	ENST00000589318	H1FX	Q92522	213 aa	Known RBP	12.6	□□□□□ -0.39
DDX39A-209	ENST00000589318	TBX15	Q96SF7	602 aa		12.6	□□□□□ -0.39
DDX39A-209	ENST00000589318	RBKS	Q9H477	322 aa		12.6	□□□□□ -0.39
DDX39A-209	ENST00000589318	GSX1	Q9H4S2	264 aa	Predicted RBP	12.6	□□□□□ -0.39

Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms