RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 DNAJC9-AS1A6NH13 148 aa12.77□□□□□ -0.37
SS18-211ENST00000578954 TEX22C9J3V5 150 aa12.77□□□□□ -0.37
SS18-211ENST00000578954 WRBO00258 174 aa12.77□□□□□ -0.37
SS18-211ENST00000578954 TMEM50AO95807 157 aa12.77□□□□□ -0.37
SS18-211ENST00000578954 RLN2P04090 185 aa12.77□□□□□ -0.37
SS18-211ENST00000578954 CHRNA7P36544 502 aa12.77□□□□□ -0.37
SS18-211ENST00000578954 PAX9P55771 341 aa12.77□□□□□ -0.37
SS18-211ENST00000578954 HILS1P60008 231 aa12.77□□□□□ -0.37
SS18-211ENST00000578954 FXYD3Q14802 87 aa12.77□□□□□ -0.37
SS18-211ENST00000578954 THAP6Q8TBB0 222 aa12.77□□□□□ -0.37
SS18-211ENST00000578954 DTD1Q8TEA8 209 aa12.77□□□□□ -0.37
SS18-211ENST00000578954 ZNF418Q8TF45 676 aaPredicted RBP12.77□□□□□ -0.37
SS18-211ENST00000578954 ARPC1AQ92747 370 aa12.77□□□□□ -0.37
SS18-211ENST00000578954 PPP1R14BQ96C90 147 aa12.77□□□□□ -0.37
SS18-211ENST00000578954 SMIM8Q96KF7 97 aa12.77□□□□□ -0.37
SS18-211ENST00000578954 HSPB9Q9BQS6 159 aa12.77□□□□□ -0.37
SS18-211ENST00000578954 ESM1Q9NQ30 184 aa12.77□□□□□ -0.37
SS18-211ENST00000578954 WSB1Q9Y6I7 421 aa12.77□□□□□ -0.37
SS18-211ENST00000578954 IGLC7A0M8Q6 106 aa12.76□□□□□ -0.37
SS18-211ENST00000578954 CEBPZOSA8MTT3 80 aa12.76□□□□□ -0.37
SS18-211ENST00000578954 E5RGE8 158 aa12.76□□□□□ -0.37
SS18-211ENST00000578954 SSSCA1O60232 199 aa12.76□□□□□ -0.37
SS18-211ENST00000578954 IGHG2P01859 326 aa12.76□□□□□ -0.37
SS18-211ENST00000578954 CRIP2P52943 208 aaPredicted RBP12.76□□□□□ -0.37
SS18-211ENST00000578954 GNB1P62873 340 aa12.76□□□□□ -0.37
SS18-211ENST00000578954 TMEM65Q6PI78 240 aa12.76□□□□□ -0.37
SS18-211ENST00000578954 HSD17B13Q7Z5P4 300 aaPredicted RBP12.76□□□□□ -0.37
SS18-211ENST00000578954 OR11H4Q8NGC9 324 aa12.76□□□□□ -0.37
SS18-211ENST00000578954 PLEKHA3Q9HB20 300 aa12.76□□□□□ -0.37
SS18-211ENST00000578954 ZNF580Q9UK33 172 aa12.76□□□□□ -0.37
SS18-211ENST00000578954 HMSDA8MTL9 139 aa12.75□□□□□ -0.37
SS18-211ENST00000578954 GPR137BO60478 399 aa12.75□□□□□ -0.37
SS18-211ENST00000578954 TSC22D2O75157 780 aa12.75□□□□□ -0.37
SS18-211ENST00000578954 CNIH1O95406 144 aa12.75□□□□□ -0.37
SS18-211ENST00000578954 OPN1MWP04001 364 aa12.75□□□□□ -0.37
SS18-211ENST00000578954 OPN1MW2P0DN77 364 aa12.75□□□□□ -0.37
SS18-211ENST00000578954 OPN1MW3P0DN78 364 aa12.75□□□□□ -0.37
SS18-211ENST00000578954 EGR2P11161 476 aaPredicted RBP12.75□□□□□ -0.37
SS18-211ENST00000578954 PVALBP20472 110 aaPredicted RBP12.75□□□□□ -0.37
SS18-211ENST00000578954 P2RY1P47900 373 aa12.75□□□□□ -0.37
SS18-211ENST00000578954 HOXA1P49639 335 aaPredicted RBP12.75□□□□□ -0.37
SS18-211ENST00000578954 BSXQ3C1V8 233 aa12.75□□□□□ -0.37
SS18-211ENST00000578954 SPINK9Q5DT21 86 aa12.75□□□□□ -0.37
SS18-211ENST00000578954 SH2D7A6NKC9 451 aaPredicted RBP12.74□□□□□ -0.37
SS18-211ENST00000578954 KCNAB3O43448 404 aa12.74□□□□□ -0.37
SS18-211ENST00000578954 RNASE1P07998 156 aaKnown RBP12.74□□□□□ -0.37
SS18-211ENST00000578954 IAPPP10997 89 aa12.74□□□□□ -0.37
SS18-211ENST00000578954 RPL15P61313 204 aaKnown RBP12.74□□□□□ -0.37
SS18-211ENST00000578954 BLCAPP62952 87 aa12.74□□□□□ -0.37
SS18-211ENST00000578954 WT1-ASQ06250 92 aa12.74□□□□□ -0.37
SS18-211ENST00000578954 ZFP69Q49AA0 526 aa12.74□□□□□ -0.37
SS18-211ENST00000578954 MRPL41Q8IXM3 137 aaKnown RBP12.74□□□□□ -0.37
SS18-211ENST00000578954 OR2C3Q8N628 320 aa12.74□□□□□ -0.37
SS18-211ENST00000578954 ZNF114Q8NC26 417 aa12.74□□□□□ -0.37
SS18-211ENST00000578954 OR10W1Q8NGF6 305 aa12.74□□□□□ -0.37
SS18-211ENST00000578954 SGMS2Q8NHU3 365 aa12.74□□□□□ -0.37
SS18-211ENST00000578954 HYLS1Q96M11 299 aa12.74□□□□□ -0.37
SS18-211ENST00000578954 HINT2Q9BX68 163 aa12.74□□□□□ -0.37
SS18-211ENST00000578954 ENY2Q9NPA8 101 aa12.74□□□□□ -0.37
SS18-211ENST00000578954 TNFRSF19Q9NS68 423 aa12.74□□□□□ -0.37
SS18-211ENST00000578954 LYRM2Q9NU23 88 aaPredicted RBP12.74□□□□□ -0.37
SS18-211ENST00000578954 TNFSF18Q9UNG2 199 aa12.74□□□□□ -0.37
SS18-211ENST00000578954 FBXO7Q9Y3I1 522 aa12.74□□□□□ -0.37
SS18-211ENST00000578954 FXYD6-FXYD2A0A087WZ82 144 aa12.73□□□□□ -0.37
SS18-211ENST00000578954 MSGN1A6NI15 193 aa12.73□□□□□ -0.37
SS18-211ENST00000578954 L7N2F9 121 aa12.73□□□□□ -0.37
SS18-211ENST00000578954 ATP6V0E1O15342 81 aa12.73□□□□□ -0.37
SS18-211ENST00000578954 IGF1P05019 195 aa12.73□□□□□ -0.37
SS18-211ENST00000578954 ATP5IP56385 69 aaPredicted RBP12.73□□□□□ -0.37
SS18-211ENST00000578954 RPL23AP62750 156 aaKnown RBP12.73□□□□□ -0.37
SS18-211ENST00000578954 VAMP2P63027 116 aa12.73□□□□□ -0.37
SS18-211ENST00000578954 C19orf54Q5BKX5 351 aa12.73□□□□□ -0.37
SS18-211ENST00000578954 ASPHD1Q5U4P2 390 aa12.73□□□□□ -0.37
SS18-211ENST00000578954 NOXA1Q86UR1 476 aa12.73□□□□□ -0.37
SS18-211ENST00000578954 Q8N2B8 174 aa12.73□□□□□ -0.37
SS18-211ENST00000578954 GRPEL2Q8TAA5 225 aa12.73□□□□□ -0.37
SS18-211ENST00000578954 DCUN1D4Q92564 292 aa12.73□□□□□ -0.37
SS18-211ENST00000578954 TMEM68Q96MH6 324 aa12.73□□□□□ -0.37
SS18-211ENST00000578954 JMJD8Q96S16 334 aa12.73□□□□□ -0.37
SS18-211ENST00000578954 NPFFR1Q9GZQ6 430 aa12.73□□□□□ -0.37
SS18-211ENST00000578954 HIPK2Q9H2X6 1198 aa12.73□□□□□ -0.37
SS18-211ENST00000578954 PSENENQ9NZ42 101 aa12.73□□□□□ -0.37
SS18-211ENST00000578954 U3KQ87 197 aa12.73□□□□□ -0.37
SS18-211ENST00000578954 ZFHX3Q15911 3703 aa12.73□□□□□ -0.37
SS18-211ENST00000578954 CRYGCP07315 174 aa12.72□□□□□ -0.37
SS18-211ENST00000578954 HTR2BP41595 481 aa12.72□□□□□ -0.37
SS18-211ENST00000578954 UBA52P62987 128 aaKnown RBP12.72□□□□□ -0.37
SS18-211ENST00000578954 ERHP84090 104 aaKnown RBP12.72□□□□□ -0.37
SS18-211ENST00000578954 PVRIGQ6DKI7 326 aa12.72□□□□□ -0.37
SS18-211ENST00000578954 TMEM14EPQ6UXP3 125 aa12.72□□□□□ -0.37
SS18-211ENST00000578954 ZNF546Q86UE3 836 aa12.72□□□□□ -0.37
SS18-211ENST00000578954 SLC24A4Q8NFF2 622 aa12.72□□□□□ -0.37
SS18-211ENST00000578954 TMEM170AQ8WVE7 144 aa12.72□□□□□ -0.37
SS18-211ENST00000578954 AQP10Q96PS8 301 aa12.72□□□□□ -0.37
SS18-211ENST00000578954 DUX5Q96PT3 197 aa12.72□□□□□ -0.37
SS18-211ENST00000578954 OR4C12Q96R67 309 aa12.72□□□□□ -0.37
SS18-211ENST00000578954 FAM103A1Q9BTL3 118 aaKnown RBP12.72□□□□□ -0.37
SS18-211ENST00000578954 ZNF702PQ9H963 129 aa12.72□□□□□ -0.37
SS18-211ENST00000578954 HEYLQ9NQ87 328 aaPredicted RBP12.72□□□□□ -0.37
SS18-211ENST00000578954 RNF222A6NCQ9 220 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms