RNA–Protein interactions for RNA: ENST00000577001.1

PRPF8-216, Transcript of pre-mRNA processing factor 8, human

TSL 5

Gene PRPF8, Length 3,274 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRPF8-216	ENST00000577001	SRRM4	A7MD48	611 aa	Known RBP	12.2	□□□□□ -0.46
PRPF8-216	ENST00000577001	C17orf112	F2Z3M2	114 aa		12.2	□□□□□ -0.46
PRPF8-216	ENST00000577001	ENSA	O43768	121 aa	Known RBP	12.2	□□□□□ -0.46
PRPF8-216	ENST00000577001	IL6R	P08887	468 aa	Predicted RBP	12.2	□□□□□ -0.46
PRPF8-216	ENST00000577001	CHRNB4	P30926	498 aa		12.2	□□□□□ -0.46
PRPF8-216	ENST00000577001	RND2	P52198	227 aa		12.2	□□□□□ -0.46
PRPF8-216	ENST00000577001	PQLC2	Q6ZP29	291 aa		12.2	□□□□□ -0.46
PRPF8-216	ENST00000577001	BAGE3	Q86Y29	109 aa		12.2	□□□□□ -0.46
PRPF8-216	ENST00000577001	BAGE2	Q86Y30	109 aa		12.2	□□□□□ -0.46
PRPF8-216	ENST00000577001	FAM19A2	Q8N3H0	131 aa		12.2	□□□□□ -0.46
PRPF8-216	ENST00000577001	CALY	Q9NYX4	217 aa		12.2	□□□□□ -0.46
PRPF8-216	ENST00000577001	TRBV6-6	A0A0A6YYG2	114 aa		12.19	□□□□□ -0.46
PRPF8-216	ENST00000577001	CDKN1A	P38936	164 aa		12.19	□□□□□ -0.46
PRPF8-216	ENST00000577001	MRPS11	P82912	194 aa	Known RBP	12.19	□□□□□ -0.46
PRPF8-216	ENST00000577001	PAX5	Q02548	391 aa		12.19	□□□□□ -0.46
PRPF8-216	ENST00000577001	OR4A47	Q6IF82	309 aa		12.19	□□□□□ -0.46
PRPF8-216	ENST00000577001	BHLHA15	Q7RTS1	189 aa	Predicted RBP	12.19	□□□□□ -0.46
PRPF8-216	ENST00000577001	LINC00596	Q86U02	117 aa		12.19	□□□□□ -0.46
PRPF8-216	ENST00000577001	MS4A10	Q96PG2	267 aa		12.19	□□□□□ -0.46
PRPF8-216	ENST00000577001	GGTLC1	Q9BX51	225 aa		12.19	□□□□□ -0.46
PRPF8-216	ENST00000577001	GSX1	Q9H4S2	264 aa	Predicted RBP	12.19	□□□□□ -0.46
PRPF8-216	ENST00000577001	RAB29	O14966	203 aa		12.19	□□□□□ -0.46
PRPF8-216	ENST00000577001	CNN1	P51911	297 aa	Known RBP	12.19	□□□□□ -0.46
PRPF8-216	ENST00000577001	KRTDAP	P60985	99 aa		12.19	□□□□□ -0.46
PRPF8-216	ENST00000577001	DPPA3	Q6W0C5	159 aa		12.19	□□□□□ -0.46
PRPF8-216	ENST00000577001	STARD4	Q96DR4	205 aa		12.19	□□□□□ -0.46
PRPF8-216	ENST00000577001	KMT2E	Q8IZD2	1858 aa		12.19	□□□□□ -0.46
PRPF8-216	ENST00000577001	TRBV24-1	A0A075B6N3	115 aa		12.19	□□□□□ -0.46
PRPF8-216	ENST00000577001		B4DEV8	164 aa		12.19	□□□□□ -0.46
PRPF8-216	ENST00000577001	LYNX1	G3V0Z9	82 aa		12.19	□□□□□ -0.46
PRPF8-216	ENST00000577001	C15orf65	H3BRN8	121 aa		12.19	□□□□□ -0.46
PRPF8-216	ENST00000577001	FCN1	O00602	326 aa		12.19	□□□□□ -0.46
PRPF8-216	ENST00000577001	LYNX1	P0DP58	116 aa		12.19	□□□□□ -0.46
PRPF8-216	ENST00000577001	BLNK	Q8WV28	456 aa		12.19	□□□□□ -0.46
PRPF8-216	ENST00000577001	TBX15	Q96SF7	602 aa		12.19	□□□□□ -0.46
PRPF8-216	ENST00000577001	SAMD10	Q9BYL1	202 aa		12.19	□□□□□ -0.46
PRPF8-216	ENST00000577001		S4R3C0	116 aa		12.19	□□□□□ -0.46
PRPF8-216	ENST00000577001		E7EUB6	86 aa		12.18	□□□□□ -0.46
PRPF8-216	ENST00000577001		K7EN84	100 aa		12.18	□□□□□ -0.46
PRPF8-216	ENST00000577001	GFRA3	O60609	400 aa		12.18	□□□□□ -0.46
PRPF8-216	ENST00000577001	OR10J1	P30954	320 aa		12.18	□□□□□ -0.46
PRPF8-216	ENST00000577001	KRTCAP3	Q53RY4	240 aa		12.18	□□□□□ -0.46
PRPF8-216	ENST00000577001	LEMD1	Q68G75	181 aa		12.18	□□□□□ -0.46
PRPF8-216	ENST00000577001	INO80C	Q6PI98	192 aa	Predicted RBP	12.18	□□□□□ -0.46
PRPF8-216	ENST00000577001	FAM90A1	Q86YD7	464 aa		12.18	□□□□□ -0.46
PRPF8-216	ENST00000577001	KDF1	Q8NAX2	398 aa	Predicted RBP	12.18	□□□□□ -0.46
PRPF8-216	ENST00000577001	CLCF1	Q9UBD9	225 aa		12.18	□□□□□ -0.46
PRPF8-216	ENST00000577001	TNRC6B	Q9UPQ9	1833 aa	Known RBP	12.18	□□□□□ -0.46
PRPF8-216	ENST00000577001	CELSR1	Q9NYQ6	3014 aa		12.18	□□□□□ -0.46
PRPF8-216	ENST00000577001	PYY	P10082	97 aa		12.18	□□□□□ -0.46
PRPF8-216	ENST00000577001	HCP5	Q6MZN7	132 aa		12.18	□□□□□ -0.46
PRPF8-216	ENST00000577001	ZNF474	Q6S9Z5	364 aa	Predicted RBP	12.18	□□□□□ -0.46
PRPF8-216	ENST00000577001	ERAS	Q7Z444	233 aa		12.18	□□□□□ -0.46
PRPF8-216	ENST00000577001		Q8N7P7	452 aa		12.18	□□□□□ -0.46
PRPF8-216	ENST00000577001	SNIP1	Q8TAD8	396 aa	Known RBP	12.18	□□□□□ -0.46
PRPF8-216	ENST00000577001	SFRP2	Q96HF1	295 aa		12.18	□□□□□ -0.46
PRPF8-216	ENST00000577001	MRPL37	Q9BZE1	423 aa	Known RBP	12.18	□□□□□ -0.46
PRPF8-216	ENST00000577001	PLEKHA3	Q9HB20	300 aa		12.18	□□□□□ -0.46
PRPF8-216	ENST00000577001	SNURFL	B1AK76	121 aa		12.17	□□□□□ -0.46
PRPF8-216	ENST00000577001	NPY1R	P25929	384 aa		12.17	□□□□□ -0.46
PRPF8-216	ENST00000577001	TFPI2	P48307	235 aa		12.17	□□□□□ -0.46
PRPF8-216	ENST00000577001	HOXB1	P14653	301 aa	Predicted RBP	12.17	□□□□□ -0.46
PRPF8-216	ENST00000577001	GPR6	P46095	362 aa	Predicted RBP	12.17	□□□□□ -0.46
PRPF8-216	ENST00000577001	PKIA	P61925	76 aa		12.17	□□□□□ -0.46
PRPF8-216	ENST00000577001	RELB	Q01201	579 aa		12.17	□□□□□ -0.46
PRPF8-216	ENST00000577001	SEM1	Q6ZVN7	128 aa		12.17	□□□□□ -0.46
PRPF8-216	ENST00000577001	OR10G8	Q8NGN5	311 aa		12.17	□□□□□ -0.46
PRPF8-216	ENST00000577001	P2RX4	Q99571	388 aa		12.17	□□□□□ -0.46
PRPF8-216	ENST00000577001	HSPB9	Q9BQS6	159 aa		12.17	□□□□□ -0.46
PRPF8-216	ENST00000577001	IFI27L2	Q9H2X8	130 aa		12.17	□□□□□ -0.46
PRPF8-216	ENST00000577001	FKBP11	Q9NYL4	201 aa		12.17	□□□□□ -0.46
PRPF8-216	ENST00000577001	TP73-AS1	Q9UF72	201 aa		12.17	□□□□□ -0.46
PRPF8-216	ENST00000577001	WDR83OS	Q9Y284	106 aa		12.17	□□□□□ -0.46
PRPF8-216	ENST00000577001		H0Y8G0	127 aa		12.17	□□□□□ -0.46
PRPF8-216	ENST00000577001	FTH1P19	P0C7X4	201 aa		12.17	□□□□□ -0.46
PRPF8-216	ENST00000577001	MAS1L	P35410	378 aa		12.17	□□□□□ -0.46
PRPF8-216	ENST00000577001	TCTA	P57738	103 aa		12.17	□□□□□ -0.46
PRPF8-216	ENST00000577001	EFNB3	Q15768	340 aa		12.17	□□□□□ -0.46
PRPF8-216	ENST00000577001	ACSF3	Q4G176	576 aa	Predicted RBP	12.17	□□□□□ -0.46
PRPF8-216	ENST00000577001	KCNIP4	Q6PIL6	250 aa		12.17	□□□□□ -0.46
PRPF8-216	ENST00000577001	RNF114	Q9Y508	228 aa		12.17	□□□□□ -0.46
PRPF8-216	ENST00000577001	ANKHD1	Q8IWZ3	2542 aa	Known RBP	12.16	□□□□□ -0.46
PRPF8-216	ENST00000577001	SRSF7	Q16629	238 aa	Known RBP eCLIP	12.16	□□□□□ -0.46
PRPF8-216	ENST00000577001	IQCJ	Q1A5X6	159 aa		12.16	□□□□□ -0.46
PRPF8-216	ENST00000577001	C1orf159	Q96HA4	380 aa		12.16	□□□□□ -0.46
PRPF8-216	ENST00000577001	ELOA3C	A0A087WX78	387 aa	Predicted RBP	12.16	□□□□□ -0.46
PRPF8-216	ENST00000577001		J3QR06	171 aa		12.16	□□□□□ -0.46
PRPF8-216	ENST00000577001	SERF1A	O75920	110 aa		12.16	□□□□□ -0.46
PRPF8-216	ENST00000577001	OR1L6	Q8NGR2	347 aa		12.16	□□□□□ -0.46
PRPF8-216	ENST00000577001	NEUROG1	Q92886	237 aa		12.16	□□□□□ -0.46
PRPF8-216	ENST00000577001	RYDEN	Q9NUL5	291 aa	Known RBP	12.16	□□□□□ -0.46
PRPF8-216	ENST00000577001	DKK4	Q9UBT3	224 aa		12.16	□□□□□ -0.46
PRPF8-216	ENST00000577001	SELENOK	Q9Y6D0	94 aa		12.16	□□□□□ -0.46
PRPF8-216	ENST00000577001	TNFSF13	O75888	250 aa		12.15	□□□□□ -0.46
PRPF8-216	ENST00000577001	GCHFR	P30047	84 aa		12.15	□□□□□ -0.46
PRPF8-216	ENST00000577001	TNFAIP6	P98066	277 aa	Predicted RBP	12.15	□□□□□ -0.46
PRPF8-216	ENST00000577001		Q6ZVH6	145 aa		12.15	□□□□□ -0.46
PRPF8-216	ENST00000577001	SLC24A4	Q8NFF2	622 aa		12.15	□□□□□ -0.46
PRPF8-216	ENST00000577001	OR51B2	Q9Y5P1	312 aa		12.15	□□□□□ -0.46
PRPF8-216	ENST00000577001	PTPRQ	Q9UMZ3	2332 aa		12.15	□□□□□ -0.46

Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms