RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 RNF141Q8WVD5 230 aa11.11□□□□□ -0.63
VPS53-218ENST00000575207 PLEKHJ1Q9NW61 149 aa11.11□□□□□ -0.63
VPS53-218ENST00000575207 GHRLQ9UBU3 117 aa11.11□□□□□ -0.63
VPS53-218ENST00000575207 AK3Q9UIJ7 227 aa11.11□□□□□ -0.63
VPS53-218ENST00000575207 RBM7Q9Y580 266 aaKnown RBP11.11□□□□□ -0.63
VPS53-218ENST00000575207 CD3GP09693 182 aa11.1□□□□□ -0.63
VPS53-218ENST00000575207 MT1HL1P0DM35 61 aa11.1□□□□□ -0.63
VPS53-218ENST00000575207 HLA-GP17693 338 aa11.1□□□□□ -0.63
VPS53-218ENST00000575207 OR2B11Q5JQS5 317 aa11.1□□□□□ -0.63
VPS53-218ENST00000575207 ARHGAP24Q8N264 748 aa11.1□□□□□ -0.63
VPS53-218ENST00000575207 STXBP6Q8NFX7 210 aa11.1□□□□□ -0.63
VPS53-218ENST00000575207 RAB40CQ96S21 281 aa11.1□□□□□ -0.63
VPS53-218ENST00000575207 TM2D1Q9BX74 207 aa11.1□□□□□ -0.63
VPS53-218ENST00000575207 C12orf4Q9NQ89 552 aa11.1□□□□□ -0.63
VPS53-218ENST00000575207 HSF4Q9ULV5 492 aa11.1□□□□□ -0.63
VPS53-218ENST00000575207 MRPS7Q9Y2R9 242 aaKnown RBP11.1□□□□□ -0.63
VPS53-218ENST00000575207 IGHV3-66A0A0C4DH42 116 aa11.09□□□□□ -0.63
VPS53-218ENST00000575207 TRDCB7Z8K6 153 aa11.09□□□□□ -0.63
VPS53-218ENST00000575207 BET1O15155 118 aa11.09□□□□□ -0.63
VPS53-218ENST00000575207 APOHP02749 345 aaPredicted RBP11.09□□□□□ -0.63
VPS53-218ENST00000575207 HOXB6P17509 224 aaKnown RBP11.09□□□□□ -0.63
VPS53-218ENST00000575207 CELP19835 753 aa11.09□□□□□ -0.63
VPS53-218ENST00000575207 SLC25A24Q6NUK1 477 aa11.09□□□□□ -0.63
VPS53-218ENST00000575207 GINS3Q9BRX5 216 aa11.09□□□□□ -0.63
VPS53-218ENST00000575207 EXOGQ9Y2C4 368 aaKnown RBP11.09□□□□□ -0.63
VPS53-218ENST00000575207 PRELID3BQ9Y3B1 194 aa11.09□□□□□ -0.63
VPS53-218ENST00000575207 C1QBP02746 253 aa11.08□□□□□ -0.64
VPS53-218ENST00000575207 OR10K2Q6IF99 312 aa11.08□□□□□ -0.64
VPS53-218ENST00000575207 KCTD9Q7L273 389 aa11.08□□□□□ -0.64
VPS53-218ENST00000575207 GDPD1Q8N9F7 314 aa11.08□□□□□ -0.64
VPS53-218ENST00000575207 OR4A4PQ8NGN8 299 aa11.08□□□□□ -0.64
VPS53-218ENST00000575207 OR10J5Q8NHC4 309 aa11.08□□□□□ -0.64
VPS53-218ENST00000575207 LOC102723971A0A1B0GUV8 181 aa11.07□□□□□ -0.64
VPS53-218ENST00000575207 F5H768 121 aa11.07□□□□□ -0.64
VPS53-218ENST00000575207 IGSF11Q5DX21 431 aa11.07□□□□□ -0.64
VPS53-218ENST00000575207 GGHQ92820 318 aa11.07□□□□□ -0.64
VPS53-218ENST00000575207 LGALS12Q96DT0 336 aa11.07□□□□□ -0.64
VPS53-218ENST00000575207 TMEM59Q9BXS4 323 aa11.07□□□□□ -0.64
VPS53-218ENST00000575207 ERVK13-1Q9NX77 482 aa11.07□□□□□ -0.64
VPS53-218ENST00000575207 DCTN3O75935 186 aa11.06□□□□□ -0.64
VPS53-218ENST00000575207 POLR2IP36954 125 aaKnown RBP11.06□□□□□ -0.64
VPS53-218ENST00000575207 LELP1Q5T871 98 aa11.06□□□□□ -0.64
VPS53-218ENST00000575207 KDM4DQ6B0I6 523 aa11.06□□□□□ -0.64
VPS53-218ENST00000575207 XAF1Q6GPH4 301 aa11.06□□□□□ -0.64
VPS53-218ENST00000575207 RPL22L1Q6P5R6 122 aaKnown RBP11.06□□□□□ -0.64
VPS53-218ENST00000575207 OR4S2Q8NH73 311 aa11.06□□□□□ -0.64
VPS53-218ENST00000575207 UHRF2Q96PU4 802 aa11.06□□□□□ -0.64
VPS53-218ENST00000575207 UQCC2Q9BRT2 126 aa11.06□□□□□ -0.64
VPS53-218ENST00000575207 TMEM231Q9H6L2 316 aa11.06□□□□□ -0.64
VPS53-218ENST00000575207 MRPS16Q9Y3D3 137 aaKnown RBP11.06□□□□□ -0.64
VPS53-218ENST00000575207 IGLV5-52A0A0A0MRZ9 124 aa11.05□□□□□ -0.64
VPS53-218ENST00000575207 TRBV6-7A0A0A0MS04 114 aa11.05□□□□□ -0.64
VPS53-218ENST00000575207 K7EIM0 57 aa11.05□□□□□ -0.64
VPS53-218ENST00000575207 FABP7O15540 132 aa11.05□□□□□ -0.64
VPS53-218ENST00000575207 HBE1P02100 147 aa11.05□□□□□ -0.64
VPS53-218ENST00000575207 CCDC58Q4VC31 144 aa11.05□□□□□ -0.64
VPS53-218ENST00000575207 PSMG4Q5JS54 123 aa11.05□□□□□ -0.64
VPS53-218ENST00000575207 OGFRL1Q5TC84 451 aaPredicted RBP11.05□□□□□ -0.64
VPS53-218ENST00000575207 DCANP1Q8TF63 244 aa11.05□□□□□ -0.64
VPS53-218ENST00000575207 CABLES2Q9BTV7 478 aa11.05□□□□□ -0.64
VPS53-218ENST00000575207 TAGLN3Q9UI15 199 aa11.05□□□□□ -0.64
VPS53-218ENST00000575207 TRBV5-5A0A0J9YX44 114 aa11.04□□□□□ -0.64
VPS53-218ENST00000575207 H3BMM0 161 aa11.04□□□□□ -0.64
VPS53-218ENST00000575207 SERPINE2P07093 398 aa11.04□□□□□ -0.64
VPS53-218ENST00000575207 UBBP0CG47 229 aa11.04□□□□□ -0.64
VPS53-218ENST00000575207 RPL30P62888 115 aaKnown RBP11.04□□□□□ -0.64
VPS53-218ENST00000575207 Q499Y3 187 aa11.04□□□□□ -0.64
VPS53-218ENST00000575207 OR10W1Q8NGF6 305 aa11.04□□□□□ -0.64
VPS53-218ENST00000575207 NXF2Q9GZY0 626 aaKnown RBP11.04□□□□□ -0.64
VPS53-218ENST00000575207 FAM212BQ9NTI7 297 aaPredicted RBP11.04□□□□□ -0.64
VPS53-218ENST00000575207 FKBP6O75344 327 aa11.03□□□□□ -0.64
VPS53-218ENST00000575207 OR13C7P0DN81 318 aa11.03□□□□□ -0.64
VPS53-218ENST00000575207 TAS2R43P59537 309 aa11.03□□□□□ -0.64
VPS53-218ENST00000575207 SSX1Q16384 188 aa11.03□□□□□ -0.64
VPS53-218ENST00000575207 ESRGQ1W209 222 aa11.03□□□□□ -0.64
VPS53-218ENST00000575207 ZNF773Q6PK81 442 aa11.03□□□□□ -0.64
VPS53-218ENST00000575207 NFE4Q86UQ8 179 aa11.03□□□□□ -0.64
VPS53-218ENST00000575207 NKAIN3Q8N8D7 197 aa11.03□□□□□ -0.64
VPS53-218ENST00000575207 TRUB1Q8WWH5 349 aaKnown RBP11.03□□□□□ -0.64
VPS53-218ENST00000575207 CCDC124Q96CT7 223 aaKnown RBP11.03□□□□□ -0.64
VPS53-218ENST00000575207 CIB1Q99828 191 aa11.03□□□□□ -0.64
VPS53-218ENST00000575207 TNFRSF18Q9Y5U5 241 aa11.03□□□□□ -0.64
VPS53-218ENST00000575207 A0A1W2PPK0 400 aa11.02□□□□□ -0.65
VPS53-218ENST00000575207 AQP12BA6NM10 295 aa11.02□□□□□ -0.65
VPS53-218ENST00000575207 DIRAS3O95661 229 aa11.02□□□□□ -0.65
VPS53-218ENST00000575207 HRASP01112 189 aa11.02□□□□□ -0.65
VPS53-218ENST00000575207 MEDAGQ5VYS4 303 aa11.02□□□□□ -0.65
VPS53-218ENST00000575207 TOMM20LQ6UXN7 152 aa11.02□□□□□ -0.65
VPS53-218ENST00000575207 Q6ZSA8 131 aa11.02□□□□□ -0.65
VPS53-218ENST00000575207 AQP12AQ8IXF9 295 aa11.02□□□□□ -0.65
VPS53-218ENST00000575207 ZNF114Q8NC26 417 aa11.02□□□□□ -0.65
VPS53-218ENST00000575207 CMSS1Q9BQ75 279 aaKnown RBP11.02□□□□□ -0.65
VPS53-218ENST00000575207 QTRT1Q9BXR0 403 aaKnown RBP11.02□□□□□ -0.65
VPS53-218ENST00000575207 COMMD5Q9GZQ3 224 aa11.02□□□□□ -0.65
VPS53-218ENST00000575207 HRASLSQ9HDD0 168 aa11.02□□□□□ -0.65
VPS53-218ENST00000575207 BET1LQ9NYM9 111 aa11.02□□□□□ -0.65
VPS53-218ENST00000575207 A0A0A6YYD4 124 aa11.01□□□□□ -0.65
VPS53-218ENST00000575207 HELTA6NFD8 242 aa11.01□□□□□ -0.65
VPS53-218ENST00000575207 SNTNA6NMZ2 147 aa11.01□□□□□ -0.65
VPS53-218ENST00000575207 LYRM9A8MSI8 78 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 89.6 ms