RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 NEUROG1Q92886 237 aa5.5□□□□□ -1.53
VPS53-217ENST00000575100 SLC25A33Q9BSK2 321 aa5.5□□□□□ -1.53
VPS53-217ENST00000575100 AURKAIP1Q9NWT8 199 aaPredicted RBP5.5□□□□□ -1.53
VPS53-217ENST00000575100 RAI1Q7Z5J4 1906 aaPredicted RBP5.5□□□□□ -1.53
VPS53-217ENST00000575100 FN1P02751 2386 aaKnown RBP5.5□□□□□ -1.53
VPS53-217ENST00000575100 IGKV1-27A0A075B6S5 117 aa5.49□□□□□ -1.53
VPS53-217ENST00000575100 ATF1P18846 271 aa5.49□□□□□ -1.53
VPS53-217ENST00000575100 RAB3BP20337 219 aa5.49□□□□□ -1.53
VPS53-217ENST00000575100 HTR1DP28221 377 aa5.49□□□□□ -1.53
VPS53-217ENST00000575100 FABP6P51161 128 aa5.49□□□□□ -1.53
VPS53-217ENST00000575100 RSBN1Q5VWQ0 802 aaPredicted RBP5.49□□□□□ -1.53
VPS53-217ENST00000575100 SFXN4Q6P4A7 337 aa5.49□□□□□ -1.53
VPS53-217ENST00000575100 LINC00476Q8WZB0 136 aa5.49□□□□□ -1.53
VPS53-217ENST00000575100 CMBLQ96DG6 245 aa5.49□□□□□ -1.53
VPS53-217ENST00000575100 CHST5Q9GZS9 411 aa5.49□□□□□ -1.53
VPS53-217ENST00000575100 PLEKHA3Q9HB20 300 aa5.49□□□□□ -1.53
VPS53-217ENST00000575100 SELENOKQ9Y6D0 94 aa5.49□□□□□ -1.53
VPS53-217ENST00000575100 SVEP1Q4LDE5 3571 aa5.49□□□□□ -1.53
VPS53-217ENST00000575100 CD300LBA8K4G0 201 aa5.49□□□□□ -1.53
VPS53-217ENST00000575100 DEFB108AA8MXU0 73 aa5.49□□□□□ -1.53
VPS53-217ENST00000575100 CRYAAP02489 173 aa5.49□□□□□ -1.53
VPS53-217ENST00000575100 CD2P06729 351 aa5.49□□□□□ -1.53
VPS53-217ENST00000575100 SELEP16581 610 aa5.49□□□□□ -1.53
VPS53-217ENST00000575100 ZNF20P17024 532 aa5.49□□□□□ -1.53
VPS53-217ENST00000575100 MYL9P24844 172 aa5.49□□□□□ -1.53
VPS53-217ENST00000575100 EVX1P49640 407 aa5.49□□□□□ -1.53
VPS53-217ENST00000575100 RAB7AP51149 207 aa5.49□□□□□ -1.53
VPS53-217ENST00000575100 RPS27AP62979 156 aaKnown RBP5.49□□□□□ -1.53
VPS53-217ENST00000575100 MLANAQ16655 118 aa5.49□□□□□ -1.53
VPS53-217ENST00000575100 FBXW12Q6X9E4 464 aa5.49□□□□□ -1.53
VPS53-217ENST00000575100 TCF24Q7RTU0 167 aa5.49□□□□□ -1.53
VPS53-217ENST00000575100 OR4M2Q8NGB6 313 aa5.49□□□□□ -1.53
VPS53-217ENST00000575100 PIFOQ8TCI5 191 aa5.49□□□□□ -1.53
VPS53-217ENST00000575100 CYYR1Q96J86 154 aa5.49□□□□□ -1.53
VPS53-217ENST00000575100 SMR3AQ99954 134 aa5.49□□□□□ -1.53
VPS53-217ENST00000575100 RASL11BQ9BPW5 248 aa5.49□□□□□ -1.53
VPS53-217ENST00000575100 IGHV3-64DA0A0J9YX35 117 aa5.48□□□□□ -1.53
VPS53-217ENST00000575100 A0A1W2PPR1 153 aa5.48□□□□□ -1.53
VPS53-217ENST00000575100 IFITM5A6NNB3 132 aa5.48□□□□□ -1.53
VPS53-217ENST00000575100 ZNF850A8MQ14 1090 aa5.48□□□□□ -1.53
VPS53-217ENST00000575100 SHISA9B4DS77 424 aa5.48□□□□□ -1.53
VPS53-217ENST00000575100 SMKR1H3BMG3 65 aa5.48□□□□□ -1.53
VPS53-217ENST00000575100 GGCTO75223 188 aaKnown RBP5.48□□□□□ -1.53
VPS53-217ENST00000575100 ZNF780AO75290 641 aaPredicted RBP5.48□□□□□ -1.53
VPS53-217ENST00000575100 ARG1P05089 322 aa5.48□□□□□ -1.53
VPS53-217ENST00000575100 HKR1P10072 659 aa5.48□□□□□ -1.53
VPS53-217ENST00000575100 CD37P11049 281 aa5.48□□□□□ -1.53
VPS53-217ENST00000575100 S100GP29377 79 aa5.48□□□□□ -1.53
VPS53-217ENST00000575100 HRH1P35367 487 aa5.48□□□□□ -1.53
VPS53-217ENST00000575100 AMTP48728 403 aa5.48□□□□□ -1.53
VPS53-217ENST00000575100 UBE2E1P51965 193 aa5.48□□□□□ -1.53
VPS53-217ENST00000575100 ZNF726P1Q15940 193 aa5.48□□□□□ -1.53
VPS53-217ENST00000575100 NCMAPQ5T1S8 102 aa5.48□□□□□ -1.53
VPS53-217ENST00000575100 SAMD13Q5VXD3 122 aa5.48□□□□□ -1.53
VPS53-217ENST00000575100 Q6ZR03 302 aa5.48□□□□□ -1.53
VPS53-217ENST00000575100 Q6ZTK2 550 aa5.48□□□□□ -1.53
VPS53-217ENST00000575100 C1QL2Q7Z5L3 287 aa5.48□□□□□ -1.53
VPS53-217ENST00000575100 PRIMA1Q86XR5 153 aa5.48□□□□□ -1.53
VPS53-217ENST00000575100 OR5D14Q8NGL3 314 aa5.48□□□□□ -1.53
VPS53-217ENST00000575100 UBE2E2Q96LR5 201 aa5.48□□□□□ -1.53
VPS53-217ENST00000575100 RBM7Q9Y580 266 aaKnown RBP5.48□□□□□ -1.53
VPS53-217ENST00000575100 ROS1P08922 2347 aa5.48□□□□□ -1.53
VPS53-217ENST00000575100 ZNF816-ZNF321PA0A0X1KG74 233 aa5.47□□□□□ -1.53
VPS53-217ENST00000575100 GGT3PA6NGU5 568 aa5.47□□□□□ -1.53
VPS53-217ENST00000575100 SMIM9A6NGZ8 99 aa5.47□□□□□ -1.53
VPS53-217ENST00000575100 DHRS7CA6NNS2 312 aa5.47□□□□□ -1.53
VPS53-217ENST00000575100 MGST3O14880 152 aa5.47□□□□□ -1.53
VPS53-217ENST00000575100 CA11O75493 328 aa5.47□□□□□ -1.53
VPS53-217ENST00000575100 MT-CO2P00403 227 aa5.47□□□□□ -1.53
VPS53-217ENST00000575100 NRASP01111 189 aa5.47□□□□□ -1.53
VPS53-217ENST00000575100 GLRXP35754 106 aa5.47□□□□□ -1.53
VPS53-217ENST00000575100 OR3A4PP47883 348 aa5.47□□□□□ -1.53
VPS53-217ENST00000575100 LGALS7P47929 136 aa5.47□□□□□ -1.53
VPS53-217ENST00000575100 RORCP51449 518 aa5.47□□□□□ -1.53
VPS53-217ENST00000575100 DLX6P56179 175 aa5.47□□□□□ -1.53
VPS53-217ENST00000575100 RRAS2P62070 204 aaPredicted RBP5.47□□□□□ -1.53
VPS53-217ENST00000575100 SELENOTP62341 195 aa5.47□□□□□ -1.53
VPS53-217ENST00000575100 PRDX4Q13162 271 aa5.47□□□□□ -1.53
VPS53-217ENST00000575100 ZNF404Q494X3 552 aa5.47□□□□□ -1.53
VPS53-217ENST00000575100 ZFP69Q49AA0 526 aa5.47□□□□□ -1.53
VPS53-217ENST00000575100 SPRNQ5BIV9 151 aa5.47□□□□□ -1.53
VPS53-217ENST00000575100 ATAD3CQ5T2N8 411 aa5.47□□□□□ -1.53
VPS53-217ENST00000575100 WDR86Q86TI4 376 aa5.47□□□□□ -1.53
VPS53-217ENST00000575100 SPICQ8N5J4 248 aa5.47□□□□□ -1.53
VPS53-217ENST00000575100 OR10AD1Q8NGE0 317 aa5.47□□□□□ -1.53
VPS53-217ENST00000575100 OR8U1Q8NH10 309 aa5.47□□□□□ -1.53
VPS53-217ENST00000575100 MCFD2Q8NI22 146 aa5.47□□□□□ -1.53
VPS53-217ENST00000575100 PP6455Q8WZ26 134 aa5.47□□□□□ -1.53
VPS53-217ENST00000575100 FAM218AQ96MZ4 157 aa5.47□□□□□ -1.53
VPS53-217ENST00000575100 TMPRSS5Q9H3S3 457 aa5.47□□□□□ -1.53
VPS53-217ENST00000575100 ELL3Q9HB65 397 aaPredicted RBP5.47□□□□□ -1.53
VPS53-217ENST00000575100 CA10Q9NS85 328 aa5.47□□□□□ -1.53
VPS53-217ENST00000575100 COMMD3Q9UBI1 195 aa5.47□□□□□ -1.53
VPS53-217ENST00000575100 CKLFQ9UBR5 152 aa5.47□□□□□ -1.53
VPS53-217ENST00000575100 TP53TG1Q9Y2A0 90 aa5.47□□□□□ -1.53
VPS53-217ENST00000575100 V9GY05 133 aa5.47□□□□□ -1.53
VPS53-217ENST00000575100 PLCE1Q9P212 2302 aa5.47□□□□□ -1.53
VPS53-217ENST00000575100 IQCF6A8MYZ5 107 aa5.47□□□□□ -1.53
VPS53-217ENST00000575100 KRBOX1C9JBD0 128 aa5.47□□□□□ -1.53
VPS53-217ENST00000575100 E7EQL1 145 aa5.47□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms