RNA–Protein interactions for RNA: ENST00000574933.1

CCDC40-213, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 326 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-213ENST00000574933 C12orf54Q6X4T0 127 aa14.24□□□□□ -0.13
CCDC40-213ENST00000574933 HSD17B13Q7Z5P4 300 aaPredicted RBP14.24□□□□□ -0.13
CCDC40-213ENST00000574933 C12orf45Q8N5I9 185 aaPredicted RBP14.24□□□□□ -0.13
CCDC40-213ENST00000574933 OR5AU1Q8NGC0 362 aa14.24□□□□□ -0.13
CCDC40-213ENST00000574933 OR5M8Q8NGP6 311 aa14.24□□□□□ -0.13
CCDC40-213ENST00000574933 GPN1Q9HCN4 374 aaPredicted RBP14.24□□□□□ -0.13
CCDC40-213ENST00000574933 CACNG5Q9UF02 275 aa14.24□□□□□ -0.13
CCDC40-213ENST00000574933 CACFD1Q9UGQ2 172 aa14.24□□□□□ -0.13
CCDC40-213ENST00000574933 IGLC7A0M8Q6 106 aa14.23□□□□□ -0.13
CCDC40-213ENST00000574933 INS-IGF2F8WCM5 200 aa14.23□□□□□ -0.13
CCDC40-213ENST00000574933 ST8SIA3O43173 380 aa14.23□□□□□ -0.13
CCDC40-213ENST00000574933 SOX15O60248 233 aa14.23□□□□□ -0.13
CCDC40-213ENST00000574933 PITX3O75364 302 aa14.23□□□□□ -0.13
CCDC40-213ENST00000574933 ELANEP08246 267 aa14.23□□□□□ -0.13
CCDC40-213ENST00000574933 TRAPPC2P0DI81 140 aa14.23□□□□□ -0.13
CCDC40-213ENST00000574933 TRAPPC2BP0DI82 140 aa14.23□□□□□ -0.13
CCDC40-213ENST00000574933 PRCDQ00LT1 54 aa14.23□□□□□ -0.13
CCDC40-213ENST00000574933 FOXE3Q13461 319 aa14.23□□□□□ -0.13
CCDC40-213ENST00000574933 SMCO1Q147U7 214 aa14.23□□□□□ -0.13
CCDC40-213ENST00000574933 KLK9Q2XQG4 91 aa14.23□□□□□ -0.13
CCDC40-213ENST00000574933 GGNBP1Q5YKI7 109 aa14.23□□□□□ -0.13
CCDC40-213ENST00000574933 TEX38Q6PEX7 206 aa14.23□□□□□ -0.13
CCDC40-213ENST00000574933 C10orf99Q6UWK7 81 aa14.23□□□□□ -0.13
CCDC40-213ENST00000574933 ZNF329Q86UD4 541 aa14.23□□□□□ -0.13
CCDC40-213ENST00000574933 TTC9CQ8N5M4 171 aa14.23□□□□□ -0.13
CCDC40-213ENST00000574933 FAM110DQ8TAY7 271 aaPredicted RBP14.23□□□□□ -0.13
CCDC40-213ENST00000574933 CITED1Q99966 193 aa14.23□□□□□ -0.13
CCDC40-213ENST00000574933 KLK9Q9UKQ9 250 aa14.23□□□□□ -0.13
CCDC40-213ENST00000574933 C7orf66A4D0T2 115 aa14.22□□□□□ -0.13
CCDC40-213ENST00000574933 HMX3A6NHT5 357 aa14.22□□□□□ -0.13
CCDC40-213ENST00000574933 NPIPB5A8MRT5 1133 aa14.22□□□□□ -0.13
CCDC40-213ENST00000574933 H3BUA1 57 aa14.22□□□□□ -0.13
CCDC40-213ENST00000574933 OPN1MWP04001 364 aa14.22□□□□□ -0.13
CCDC40-213ENST00000574933 CRYGCP07315 174 aa14.22□□□□□ -0.13
CCDC40-213ENST00000574933 HOXB5P09067 269 aa14.22□□□□□ -0.13
CCDC40-213ENST00000574933 OPN1MW2P0DN77 364 aa14.22□□□□□ -0.13
CCDC40-213ENST00000574933 OPN1MW3P0DN78 364 aa14.22□□□□□ -0.13
CCDC40-213ENST00000574933 PSMB8P28062 276 aa14.22□□□□□ -0.13
CCDC40-213ENST00000574933 CD83Q01151 205 aa14.22□□□□□ -0.13
CCDC40-213ENST00000574933 FYTTD1Q96QD9 318 aaKnown RBP14.22□□□□□ -0.13
CCDC40-213ENST00000574933 WNK1Q9H4A3 2382 aa14.21□□□□□ -0.13
CCDC40-213ENST00000574933 A0A1W2PN81 502 aa14.21□□□□□ -0.13
CCDC40-213ENST00000574933 RBMXL2O75526 392 aaKnown RBP14.21□□□□□ -0.13
CCDC40-213ENST00000574933 ADAP1O75689 374 aa14.21□□□□□ -0.13
CCDC40-213ENST00000574933 IFNA21P01568 189 aa14.21□□□□□ -0.13
CCDC40-213ENST00000574933 CTRB1P17538 263 aa14.21□□□□□ -0.13
CCDC40-213ENST00000574933 CHRNA7P36544 502 aa14.21□□□□□ -0.13
CCDC40-213ENST00000574933 SPCS3P61009 180 aa14.21□□□□□ -0.13
CCDC40-213ENST00000574933 TCTEX1D4Q5JR98 221 aa14.21□□□□□ -0.13
CCDC40-213ENST00000574933 CTRB2Q6GPI1 263 aa14.21□□□□□ -0.13
CCDC40-213ENST00000574933 OR4X2Q8NGF9 303 aa14.21□□□□□ -0.13
CCDC40-213ENST00000574933 MYOZ3Q8TDC0 251 aa14.21□□□□□ -0.13
CCDC40-213ENST00000574933 FBXO24O75426 580 aa14.2□□□□□ -0.14
CCDC40-213ENST00000574933 AREGP15514 252 aa14.2□□□□□ -0.14
CCDC40-213ENST00000574933 PSMB6P28072 239 aa14.2□□□□□ -0.14
CCDC40-213ENST00000574933 WT1-ASQ06250 92 aa14.2□□□□□ -0.14
CCDC40-213ENST00000574933 OR10W1Q8NGF6 305 aa14.2□□□□□ -0.14
CCDC40-213ENST00000574933 HSPB7Q9UBY9 170 aa14.2□□□□□ -0.14
CCDC40-213ENST00000574933 FAM90A26D6RGX4 464 aa14.19□□□□□ -0.14
CCDC40-213ENST00000574933 CD28P10747 220 aa14.19□□□□□ -0.14
CCDC40-213ENST00000574933 TATDN3Q17R31 274 aa14.19□□□□□ -0.14
CCDC40-213ENST00000574933 MRPL41Q8IXM3 137 aaKnown RBP14.19□□□□□ -0.14
CCDC40-213ENST00000574933 C3orf56Q8N813 242 aa14.19□□□□□ -0.14
CCDC40-213ENST00000574933 OR5T1Q8NG75 326 aa14.19□□□□□ -0.14
CCDC40-213ENST00000574933 SPATA3Q8NHX4 192 aa14.19□□□□□ -0.14
CCDC40-213ENST00000574933 PDCD10Q9BUL8 212 aa14.19□□□□□ -0.14
CCDC40-213ENST00000574933 SLA2Q9H6Q3 261 aa14.19□□□□□ -0.14
CCDC40-213ENST00000574933 IFNA17P01571 189 aa14.18□□□□□ -0.14
CCDC40-213ENST00000574933 APELAP0DMC3 54 aa14.18□□□□□ -0.14
CCDC40-213ENST00000574933 TNFRSF9Q07011 255 aa14.18□□□□□ -0.14
CCDC40-213ENST00000574933 KIAA0141Q14154 515 aaPredicted RBP14.18□□□□□ -0.14
CCDC40-213ENST00000574933 CXorf66Q5JRM2 361 aaPredicted RBP14.18□□□□□ -0.14
CCDC40-213ENST00000574933 SHISA2Q6UWI4 295 aa14.18□□□□□ -0.14
CCDC40-213ENST00000574933 OR2C3Q8N628 320 aa14.18□□□□□ -0.14
CCDC40-213ENST00000574933 OR1S1Q8NH92 325 aa14.18□□□□□ -0.14
CCDC40-213ENST00000574933 HINT2Q9BX68 163 aa14.18□□□□□ -0.14
CCDC40-213ENST00000574933 ZFP57Q9NU63 452 aa14.18□□□□□ -0.14
CCDC40-213ENST00000574933 TRBV9A0A0B4J1U6 114 aa14.17□□□□□ -0.14
CCDC40-213ENST00000574933 MPTX1A8MV57 137 aa14.17□□□□□ -0.14
CCDC40-213ENST00000574933 OR13C7P0DN81 318 aa14.17□□□□□ -0.14
CCDC40-213ENST00000574933 RAB9AP51151 201 aa14.17□□□□□ -0.14
CCDC40-213ENST00000574933 SRSF4Q08170 494 aaKnown RBP14.17□□□□□ -0.14
CCDC40-213ENST00000574933 ZNF114Q8NC26 417 aa14.17□□□□□ -0.14
CCDC40-213ENST00000574933 OR4D5Q8NGN0 318 aa14.17□□□□□ -0.14
CCDC40-213ENST00000574933 OR10C1Q96KK4 312 aa14.17□□□□□ -0.14
CCDC40-213ENST00000574933 KLK15Q9H2R5 256 aa14.17□□□□□ -0.14
CCDC40-213ENST00000574933 PLEKHA3Q9HB20 300 aa14.17□□□□□ -0.14
CCDC40-213ENST00000574933 RPLP1P05386 114 aaKnown RBP14.16□□□□□ -0.14
CCDC40-213ENST00000574933 PF4V1P10720 104 aa14.16□□□□□ -0.14
CCDC40-213ENST00000574933 ID3Q02535 119 aa14.16□□□□□ -0.14
CCDC40-213ENST00000574933 FANCD2OSQ96PS1 177 aa14.16□□□□□ -0.14
CCDC40-213ENST00000574933 CITED2Q99967 270 aaPredicted RBP14.16□□□□□ -0.14
CCDC40-213ENST00000574933 TSSC4Q9Y5U2 329 aaPredicted RBP14.16□□□□□ -0.14
CCDC40-213ENST00000574933 ALG5Q9Y673 324 aa14.16□□□□□ -0.14
CCDC40-213ENST00000574933 ADARB2-AS1A8MUL3 147 aa14.15□□□□□ -0.14
CCDC40-213ENST00000574933 HIST1H1BP16401 226 aaKnown RBP14.15□□□□□ -0.14
CCDC40-213ENST00000574933 CDX1P47902 265 aaPredicted RBP14.15□□□□□ -0.14
CCDC40-213ENST00000574933 RPL23AP62750 156 aaKnown RBP14.15□□□□□ -0.14
CCDC40-213ENST00000574933 ERHP84090 104 aaKnown RBP14.15□□□□□ -0.14
CCDC40-213ENST00000574933 C2orf68Q2NKX9 166 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms