RNA–Protein interactions for RNA: ENST00000574087.1

NUP88-208, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-208ENST00000574087 OR1L1Q8NH94 360 aa2.74□□□□□ -1.97
NUP88-208ENST00000574087 MALSU1Q96EH3 234 aa2.74□□□□□ -1.97
NUP88-208ENST00000574087 GALNT14Q96FL9 552 aa2.74□□□□□ -1.97
NUP88-208ENST00000574087 TEX37Q96LM6 180 aa2.74□□□□□ -1.97
NUP88-208ENST00000574087 IP6K3Q96PC2 410 aa2.74□□□□□ -1.97
NUP88-208ENST00000574087 ERMAPQ96PL5 475 aaPredicted RBP2.74□□□□□ -1.97
NUP88-208ENST00000574087 OR52B2Q96RD2 323 aa2.74□□□□□ -1.97
NUP88-208ENST00000574087 TRIB3Q96RU7 358 aa2.74□□□□□ -1.97
NUP88-208ENST00000574087 SMIM3Q9BZL3 60 aa2.74□□□□□ -1.97
NUP88-208ENST00000574087 SLIRPQ9GZT3 109 aaKnown RBP2.74□□□□□ -1.97
NUP88-208ENST00000574087 COA1Q9GZY4 146 aa2.74□□□□□ -1.97
NUP88-208ENST00000574087 TMEM222Q9H0R3 208 aa2.74□□□□□ -1.97
NUP88-208ENST00000574087 OR52D1Q9H346 318 aa2.74□□□□□ -1.97
NUP88-208ENST00000574087 UBQLN4Q9NRR5 601 aa2.74□□□□□ -1.97
NUP88-208ENST00000574087 BTRCQ9Y297 605 aa2.74□□□□□ -1.97
NUP88-208ENST00000574087 F11RQ9Y624 299 aaKnown RBP2.74□□□□□ -1.97
NUP88-208ENST00000574087 ATAD5Q96QE3 1844 aa2.74□□□□□ -1.97
NUP88-208ENST00000574087 KIF13BQ9NQT8 1826 aa2.74□□□□□ -1.97
NUP88-208ENST00000574087 PHRF1Q9P1Y6 1649 aaKnown RBP2.74□□□□□ -1.97
NUP88-208ENST00000574087 OTOFQ9HC10 1997 aa2.74□□□□□ -1.97
NUP88-208ENST00000574087 DLG5Q8TDM6 1919 aa2.74□□□□□ -1.97
NUP88-208ENST00000574087 MARF1Q9Y4F3 1742 aaKnown RBP2.73□□□□□ -1.97
NUP88-208ENST00000574087 IGLV4-60A0A075B6I1 120 aa2.73□□□□□ -1.97
NUP88-208ENST00000574087 A0A1B0GV50 99 aa2.73□□□□□ -1.97
NUP88-208ENST00000574087 TMEM269A0A1B0GVZ9 245 aa2.73□□□□□ -1.97
NUP88-208ENST00000574087 hADV38S2A0JD32 116 aa2.73□□□□□ -1.97
NUP88-208ENST00000574087 MYBPHLA2RUH7 354 aa2.73□□□□□ -1.97
NUP88-208ENST00000574087 C9JAW5 83 aa2.73□□□□□ -1.97
NUP88-208ENST00000574087 D6RAR5 112 aa2.73□□□□□ -1.97
NUP88-208ENST00000574087 H7C1C5 153 aa2.73□□□□□ -1.97
NUP88-208ENST00000574087 M0R2Z0 102 aa2.73□□□□□ -1.97
NUP88-208ENST00000574087 AIPO00170 330 aa2.73□□□□□ -1.97
NUP88-208ENST00000574087 DHRS3O75911 302 aa2.73□□□□□ -1.97
NUP88-208ENST00000574087 HLA-DQB2P05538 268 aa2.73□□□□□ -1.97
NUP88-208ENST00000574087 CSN2P05814 226 aa2.73□□□□□ -1.97
NUP88-208ENST00000574087 LGALS1P09382 135 aaKnown RBP2.73□□□□□ -1.97
NUP88-208ENST00000574087 ATP6V0CP27449 155 aa2.73□□□□□ -1.97
NUP88-208ENST00000574087 TGFBR1P36897 503 aa2.73□□□□□ -1.97
NUP88-208ENST00000574087 GNG4P50150 75 aa2.73□□□□□ -1.97
NUP88-208ENST00000574087 SNRPD2P62316 118 aaKnown RBP2.73□□□□□ -1.97
NUP88-208ENST00000574087 LCN6P62502 163 aa2.73□□□□□ -1.97
NUP88-208ENST00000574087 SLC35A2P78381 396 aa2.73□□□□□ -1.97
NUP88-208ENST00000574087 CLINT1Q14677 625 aa2.73□□□□□ -1.97
NUP88-208ENST00000574087 JOSD1Q15040 202 aaPredicted RBP2.73□□□□□ -1.97
NUP88-208ENST00000574087 ZNF684Q5T5D7 378 aa2.73□□□□□ -1.97
NUP88-208ENST00000574087 TMEM236Q5W0B7 351 aa2.73□□□□□ -1.97
NUP88-208ENST00000574087 RPL22L1Q6P5R6 122 aaKnown RBP2.73□□□□□ -1.97
NUP88-208ENST00000574087 FAM183BPQ6ZVS7 135 aa2.73□□□□□ -1.97
NUP88-208ENST00000574087 ZNF550Q7Z398 422 aa2.73□□□□□ -1.97
NUP88-208ENST00000574087 KRTCAP2Q8N6L1 136 aa2.73□□□□□ -1.97
NUP88-208ENST00000574087 PLPP5Q8NEB5 264 aa2.73□□□□□ -1.97
NUP88-208ENST00000574087 OR4K5Q8NGD3 323 aa2.73□□□□□ -1.97
NUP88-208ENST00000574087 OR10D3Q8NH80 312 aa2.73□□□□□ -1.97
NUP88-208ENST00000574087 POP5Q969H6 163 aaKnown RBP2.73□□□□□ -1.97
NUP88-208ENST00000574087 ACY3Q96HD9 319 aa2.73□□□□□ -1.97
NUP88-208ENST00000574087 TSPAN32Q96QS1 320 aa2.73□□□□□ -1.97
NUP88-208ENST00000574087 LYSMD1Q96S90 227 aa2.73□□□□□ -1.97
NUP88-208ENST00000574087 RARRES2Q99969 163 aa2.73□□□□□ -1.97
NUP88-208ENST00000574087 OR2J1Q9GZK6 312 aa2.73□□□□□ -1.97
NUP88-208ENST00000574087 OR8D2Q9GZM6 311 aa2.73□□□□□ -1.97
NUP88-208ENST00000574087 CHST6Q9GZX3 395 aa2.73□□□□□ -1.97
NUP88-208ENST00000574087 OR51I2Q9H344 312 aa2.73□□□□□ -1.97
NUP88-208ENST00000574087 PRO1933Q9H354 126 aa2.73□□□□□ -1.97
NUP88-208ENST00000574087 PRTFDC1Q9NRG1 225 aa2.73□□□□□ -1.97
NUP88-208ENST00000574087 HIGD1AQ9Y241 93 aa2.73□□□□□ -1.97
NUP88-208ENST00000574087 PKIGQ9Y2B9 76 aa2.73□□□□□ -1.97
NUP88-208ENST00000574087 DCCP43146 1447 aa2.73□□□□□ -1.97
NUP88-208ENST00000574087 CRB1P82279 1406 aa2.73□□□□□ -1.97
NUP88-208ENST00000574087 MED1Q15648 1581 aaPredicted RBP2.73□□□□□ -1.97
NUP88-208ENST00000574087 TRPM3Q9HCF6 1732 aaPredicted RBP2.73□□□□□ -1.97
NUP88-208ENST00000574087 TRPM2O94759 1503 aa2.73□□□□□ -1.97
NUP88-208ENST00000574087 KIAA0556O60303 1618 aa2.72□□□□□ -1.97
NUP88-208ENST00000574087 TEX50A0A1B0GTY4 177 aa2.72□□□□□ -1.97
NUP88-208ENST00000574087 LOC102725191A0A1B0GVB3 256 aa2.72□□□□□ -1.97
NUP88-208ENST00000574087 SPAARA0A1B0GVQ0 90 aa2.72□□□□□ -1.97
NUP88-208ENST00000574087 A0A1B0GW64 132 aa2.72□□□□□ -1.97
NUP88-208ENST00000574087 DUXBA0A1W2PPF3 345 aa2.72□□□□□ -1.97
NUP88-208ENST00000574087 NCBP2LA6PVI3 153 aaKnown RBP2.72□□□□□ -1.97
NUP88-208ENST00000574087 PDCD5O14737 125 aa2.72□□□□□ -1.97
NUP88-208ENST00000574087 ANGPTL7O43827 346 aa2.72□□□□□ -1.97
NUP88-208ENST00000574087 ATRNO75882 1429 aa2.72□□□□□ -1.97
NUP88-208ENST00000574087 OR2H2O95918 312 aa2.72□□□□□ -1.97
NUP88-208ENST00000574087 APOC3P02656 99 aa2.72□□□□□ -1.97
NUP88-208ENST00000574087 OR4A8P0C604 315 aa2.72□□□□□ -1.97
NUP88-208ENST00000574087 POLR2IP36954 125 aaKnown RBP2.72□□□□□ -1.97
NUP88-208ENST00000574087 MARCKSL1P49006 195 aa2.72□□□□□ -1.97
NUP88-208ENST00000574087 ARPP19P56211 112 aa2.72□□□□□ -1.97
NUP88-208ENST00000574087 CTBP2P56545 445 aa2.72□□□□□ -1.97
NUP88-208ENST00000574087 NDUFA6P56556 154 aa2.72□□□□□ -1.97
NUP88-208ENST00000574087 C1QTNF8P60827 252 aa2.72□□□□□ -1.97
NUP88-208ENST00000574087 HOXC5Q00444 222 aa2.72□□□□□ -1.97
NUP88-208ENST00000574087 DEFA5Q01523 94 aa2.72□□□□□ -1.97
NUP88-208ENST00000574087 HSD52Q0P140 79 aa2.72□□□□□ -1.97
NUP88-208ENST00000574087 COA6Q5JTJ3 125 aaKnown RBP2.72□□□□□ -1.97
NUP88-208ENST00000574087 NXNL2Q5VZ03 156 aa2.72□□□□□ -1.97
NUP88-208ENST00000574087 OR2T5Q6IEZ7 315 aa2.72□□□□□ -1.97
NUP88-208ENST00000574087 TET2Q6N021 2002 aaPredicted RBP2.72□□□□□ -1.97
NUP88-208ENST00000574087 GLIPR1L1Q6UWM5 242 aa2.72□□□□□ -1.97
NUP88-208ENST00000574087 TMEM150AQ86TG1 271 aa2.72□□□□□ -1.97
NUP88-208ENST00000574087 TMEM86AQ8N2M4 240 aa2.72□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms