RNA–Protein interactions for RNA: ENST00000570650.1

VPS53-208, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 729 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-208ENST00000570650 APOBP04114 4563 aaKnown RBP4.18□□□□□ -1.74
VPS53-208ENST00000570650 A0A0A6YYD4 124 aa4.17□□□□□ -1.74
VPS53-208ENST00000570650 A0A1B0GW64 132 aa4.17□□□□□ -1.74
VPS53-208ENST00000570650 C15orf62A8K5M9 175 aa4.17□□□□□ -1.74
VPS53-208ENST00000570650 SOCS1O15524 211 aa4.17□□□□□ -1.74
VPS53-208ENST00000570650 FABP7O15540 132 aa4.17□□□□□ -1.74
VPS53-208ENST00000570650 ZNF207O43670 478 aaKnown RBP4.17□□□□□ -1.74
VPS53-208ENST00000570650 TRIAP1O43715 76 aa4.17□□□□□ -1.74
VPS53-208ENST00000570650 FCGR3BO75015 233 aa4.17□□□□□ -1.74
VPS53-208ENST00000570650 KBTBD11O94819 623 aa4.17□□□□□ -1.74
VPS53-208ENST00000570650 REG1AP05451 166 aa4.17□□□□□ -1.74
VPS53-208ENST00000570650 CD3GP09693 182 aa4.17□□□□□ -1.74
VPS53-208ENST00000570650 FCGR1AP12314 374 aa4.17□□□□□ -1.74
VPS53-208ENST00000570650 GABRB1P18505 474 aa4.17□□□□□ -1.74
VPS53-208ENST00000570650 NPY1RP25929 384 aa4.17□□□□□ -1.74
VPS53-208ENST00000570650 PTBP1P26599 531 aaKnown RBP eCLIP4.17□□□□□ -1.74
VPS53-208ENST00000570650 ARFRP1Q13795 201 aa4.17□□□□□ -1.74
VPS53-208ENST00000570650 RNF212Q495C1 297 aa4.17□□□□□ -1.74
VPS53-208ENST00000570650 TTC23Q5W5X9 447 aa4.17□□□□□ -1.74
VPS53-208ENST00000570650 MORN3Q6PF18 240 aaPredicted RBP4.17□□□□□ -1.74
VPS53-208ENST00000570650 SPSB3Q6PJ21 355 aa4.17□□□□□ -1.74
VPS53-208ENST00000570650 STHQ8IWL8 128 aa4.17□□□□□ -1.74
VPS53-208ENST00000570650 ZBTB34Q8NCN2 500 aa4.17□□□□□ -1.74
VPS53-208ENST00000570650 OR6M1Q8NGM8 313 aa4.17□□□□□ -1.74
VPS53-208ENST00000570650 OR4A4PQ8NGN8 299 aa4.17□□□□□ -1.74
VPS53-208ENST00000570650 OR10J5Q8NHC4 309 aa4.17□□□□□ -1.74
VPS53-208ENST00000570650 TMEM167AQ8TBQ9 72 aa4.17□□□□□ -1.74
VPS53-208ENST00000570650 VN1R17PQ8TDU5 208 aa4.17□□□□□ -1.74
VPS53-208ENST00000570650 BSCL2Q96G97 398 aaPredicted RBP4.17□□□□□ -1.74
VPS53-208ENST00000570650 FAM210BQ96KR6 192 aa4.17□□□□□ -1.74
VPS53-208ENST00000570650 PGLYRP3Q96LB9 341 aa4.17□□□□□ -1.74
VPS53-208ENST00000570650 CMTM3Q96MX0 182 aa4.17□□□□□ -1.74
VPS53-208ENST00000570650 DERL3Q96Q80 235 aa4.17□□□□□ -1.74
VPS53-208ENST00000570650 OR2A7Q96R45 310 aa4.17□□□□□ -1.74
VPS53-208ENST00000570650 RNF2Q99496 336 aa4.17□□□□□ -1.74
VPS53-208ENST00000570650 CMSS1Q9BQ75 279 aaKnown RBP4.17□□□□□ -1.74
VPS53-208ENST00000570650 CABLES2Q9BTV7 478 aa4.17□□□□□ -1.74
VPS53-208ENST00000570650 BABAM2Q9NXR7 383 aa4.17□□□□□ -1.74
VPS53-208ENST00000570650 THYN1Q9P016 225 aa4.17□□□□□ -1.74
VPS53-208ENST00000570650 SMPXQ9UHP9 88 aa4.17□□□□□ -1.74
VPS53-208ENST00000570650 MRPS7Q9Y2R9 242 aaKnown RBP4.17□□□□□ -1.74
VPS53-208ENST00000570650 ORC6Q9Y5N6 252 aa4.17□□□□□ -1.74
VPS53-208ENST00000570650 IGKV3-7A0A075B6H7 116 aa4.16□□□□□ -1.74
VPS53-208ENST00000570650 IGHV3OR16-8A0A075B7F1 116 aa4.16□□□□□ -1.74
VPS53-208ENST00000570650 OR2T8A6NH00 312 aa4.16□□□□□ -1.74
VPS53-208ENST00000570650 SAC3D1A6NKF1 404 aa4.16□□□□□ -1.74
VPS53-208ENST00000570650 TMEM14DPA8MWL7 114 aa4.16□□□□□ -1.74
VPS53-208ENST00000570650 CHEK1O14757 476 aa4.16□□□□□ -1.74
VPS53-208ENST00000570650 BET1O15155 118 aa4.16□□□□□ -1.74
VPS53-208ENST00000570650 CYB5BO43169 146 aa4.16□□□□□ -1.74
VPS53-208ENST00000570650 DFFBO76075 338 aa4.16□□□□□ -1.74
VPS53-208ENST00000570650 LALBAP00709 142 aa4.16□□□□□ -1.74
VPS53-208ENST00000570650 GIG44P09565 113 aaPredicted RBP4.16□□□□□ -1.74
VPS53-208ENST00000570650 SPP1P10451 314 aa4.16□□□□□ -1.74
VPS53-208ENST00000570650 CELP19835 753 aa4.16□□□□□ -1.74
VPS53-208ENST00000570650 CRHBPP24387 322 aa4.16□□□□□ -1.74
VPS53-208ENST00000570650 DCKP27707 260 aa4.16□□□□□ -1.74
VPS53-208ENST00000570650 ETV1P50549 477 aa4.16□□□□□ -1.74
VPS53-208ENST00000570650 DEFB131AP59861 70 aa4.16□□□□□ -1.74
VPS53-208ENST00000570650 PAFAH1B2P68402 229 aa4.16□□□□□ -1.74
VPS53-208ENST00000570650 UNC119Q13432 240 aa4.16□□□□□ -1.74
VPS53-208ENST00000570650 DNAL1Q4LDG9 190 aa4.16□□□□□ -1.74
VPS53-208ENST00000570650 IGSF11Q5DX21 431 aa4.16□□□□□ -1.74
VPS53-208ENST00000570650 FAM90A2PQ658T7 463 aa4.16□□□□□ -1.74
VPS53-208ENST00000570650 LEMD1Q68G75 181 aa4.16□□□□□ -1.74
VPS53-208ENST00000570650 KCTD9Q7L273 389 aa4.16□□□□□ -1.74
VPS53-208ENST00000570650 SPATA12Q7Z6I5 190 aa4.16□□□□□ -1.74
VPS53-208ENST00000570650 VKORC1L1Q8N0U8 176 aa4.16□□□□□ -1.74
VPS53-208ENST00000570650 PUSL1Q8N0Z8 303 aaKnown RBP4.16□□□□□ -1.74
VPS53-208ENST00000570650 C6orf223Q8N319 242 aa4.16□□□□□ -1.74
VPS53-208ENST00000570650 GBGT1Q8N5D6 347 aa4.16□□□□□ -1.74
VPS53-208ENST00000570650 ZFP41Q8N8Y5 198 aa4.16□□□□□ -1.74
VPS53-208ENST00000570650 TMEM116Q8NCL8 245 aa4.16□□□□□ -1.74
VPS53-208ENST00000570650 C18orf15Q96N68 181 aa4.16□□□□□ -1.74
VPS53-208ENST00000570650 URM1Q9BTM9 101 aaKnown RBP4.16□□□□□ -1.74
VPS53-208ENST00000570650 RHPN1-AS1Q9BWJ2 59 aa4.16□□□□□ -1.74
VPS53-208ENST00000570650 LPAR5Q9H1C0 372 aa4.16□□□□□ -1.74
VPS53-208ENST00000570650 KCNK15Q9H427 330 aa4.16□□□□□ -1.74
VPS53-208ENST00000570650 RNF167Q9H6Y7 350 aa4.16□□□□□ -1.74
VPS53-208ENST00000570650 FGF20Q9NP95 211 aaPredicted RBP4.16□□□□□ -1.74
VPS53-208ENST00000570650 MED4Q9NPJ6 270 aa4.16□□□□□ -1.74
VPS53-208ENST00000570650 TBC1D24Q9ULP9 559 aa4.16□□□□□ -1.74
VPS53-208ENST00000570650 HSF4Q9ULV5 492 aa4.16□□□□□ -1.74
VPS53-208ENST00000570650 PRELID3BQ9Y3B1 194 aa4.16□□□□□ -1.74
VPS53-208ENST00000570650 AP4S1Q9Y587 144 aa4.16□□□□□ -1.74
VPS53-208ENST00000570650 NACAE9PAV3 2078 aa4.16□□□□□ -1.74
VPS53-208ENST00000570650 AGRNO00468 2067 aa4.16□□□□□ -1.74
VPS53-208ENST00000570650 TRBV6-7A0A0A0MS04 114 aa4.15□□□□□ -1.75
VPS53-208ENST00000570650 IGHV7-4-1A0A0J9YVY3 117 aa4.15□□□□□ -1.75
VPS53-208ENST00000570650 CGB1A6NKQ9 187 aa4.15□□□□□ -1.75
VPS53-208ENST00000570650 RAB27BO00194 218 aa4.15□□□□□ -1.75
VPS53-208ENST00000570650 GYG2O15488 501 aa4.15□□□□□ -1.75
VPS53-208ENST00000570650 DIRAS3O95661 229 aa4.15□□□□□ -1.75
VPS53-208ENST00000570650 SCGB1D2O95969 90 aa4.15□□□□□ -1.75
VPS53-208ENST00000570650 ALPLP05186 524 aa4.15□□□□□ -1.75
VPS53-208ENST00000570650 CD5P06127 495 aa4.15□□□□□ -1.75
VPS53-208ENST00000570650 HLA-GP17693 338 aa4.15□□□□□ -1.75
VPS53-208ENST00000570650 MYL12AP19105 171 aa4.15□□□□□ -1.75
VPS53-208ENST00000570650 C4BPBP20851 252 aa4.15□□□□□ -1.75
VPS53-208ENST00000570650 MAPK3P27361 379 aaPredicted RBP4.15□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms