RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 BPNT1O95861 308 aa12.81□□□□□ -0.36
CLK3-227ENST00000570296 OR2B8PP59922 312 aa12.81□□□□□ -0.36
CLK3-227ENST00000570296 FAM89BQ8N5H3 189 aa12.81□□□□□ -0.36
CLK3-227ENST00000570296 DGCR14Q96DF8 476 aaKnown RBP12.81□□□□□ -0.36
CLK3-227ENST00000570296 SRSF8Q9BRL6 282 aaKnown RBP12.81□□□□□ -0.36
CLK3-227ENST00000570296 URM1Q9BTM9 101 aaKnown RBP12.81□□□□□ -0.36
CLK3-227ENST00000570296 KCNK15Q9H427 330 aa12.81□□□□□ -0.36
CLK3-227ENST00000570296 C21orf62Q9NYP8 219 aa12.81□□□□□ -0.36
CLK3-227ENST00000570296 FOXI3A8MTJ6 420 aaPredicted RBP12.8□□□□□ -0.36
CLK3-227ENST00000570296 OR2B11Q5JQS5 317 aa12.8□□□□□ -0.36
CLK3-227ENST00000570296 RHOXF1Q8NHV9 184 aa12.8□□□□□ -0.36
CLK3-227ENST00000570296 ZNF414Q96IQ9 312 aa12.8□□□□□ -0.36
CLK3-227ENST00000570296 GINS4Q9BRT9 223 aa12.8□□□□□ -0.36
CLK3-227ENST00000570296 TRAV14DV4A0A0A6YYC5 116 aa12.79□□□□□ -0.36
CLK3-227ENST00000570296 MAPK3P27361 379 aaPredicted RBP12.79□□□□□ -0.36
CLK3-227ENST00000570296 DCKP27707 260 aa12.79□□□□□ -0.36
CLK3-227ENST00000570296 RELQ04864 619 aaPredicted RBP12.79□□□□□ -0.36
CLK3-227ENST00000570296 DHRSXQ8N5I4 330 aa12.79□□□□□ -0.36
CLK3-227ENST00000570296 FAM24BQ8N5W8 94 aa12.79□□□□□ -0.36
CLK3-227ENST00000570296 GDPD1Q8N9F7 314 aa12.79□□□□□ -0.36
CLK3-227ENST00000570296 ZNRF2Q8NHG8 242 aa12.79□□□□□ -0.36
CLK3-227ENST00000570296 CYGBQ8WWM9 190 aa12.79□□□□□ -0.36
CLK3-227ENST00000570296 ARHGAP5-AS1Q96IT6 56 aa12.79□□□□□ -0.36
CLK3-227ENST00000570296 ATG101Q9BSB4 218 aa12.79□□□□□ -0.36
CLK3-227ENST00000570296 TEX48A0A1B0GUV7 120 aa12.78□□□□□ -0.36
CLK3-227ENST00000570296 LOC100130705A0A1B0GUX0 176 aa12.78□□□□□ -0.36
CLK3-227ENST00000570296 TMEM189A5PLL7 270 aa12.78□□□□□ -0.36
CLK3-227ENST00000570296 NUPL2O15504 423 aaKnown RBP12.78□□□□□ -0.36
CLK3-227ENST00000570296 CDK1P06493 297 aa12.78□□□□□ -0.36
CLK3-227ENST00000570296 BTF3P20290 206 aaKnown RBP12.78□□□□□ -0.36
CLK3-227ENST00000570296 XGP55808 180 aa12.78□□□□□ -0.36
CLK3-227ENST00000570296 TMEM50BP56557 158 aa12.78□□□□□ -0.36
CLK3-227ENST00000570296 H1FOOQ8IZA3 346 aaPredicted RBP12.78□□□□□ -0.36
CLK3-227ENST00000570296 ZFP41Q8N8Y5 198 aa12.78□□□□□ -0.36
CLK3-227ENST00000570296 C15orf53Q8NAA6 179 aa12.78□□□□□ -0.36
CLK3-227ENST00000570296 DUSP18Q8NEJ0 188 aa12.78□□□□□ -0.36
CLK3-227ENST00000570296 PECRQ9BY49 303 aa12.78□□□□□ -0.36
CLK3-227ENST00000570296 IGHV3OR16-13A0A075B7E8 117 aa12.77□□□□□ -0.37
CLK3-227ENST00000570296 IGHV3-74A0A0B4J1X5 117 aa12.77□□□□□ -0.37
CLK3-227ENST00000570296 RAB27BO00194 218 aa12.77□□□□□ -0.37
CLK3-227ENST00000570296 YIF1AO95070 293 aa12.77□□□□□ -0.37
CLK3-227ENST00000570296 HRASP01112 189 aa12.77□□□□□ -0.37
CLK3-227ENST00000570296 CTSGP08311 255 aa12.77□□□□□ -0.37
CLK3-227ENST00000570296 CD36P16671 472 aa12.77□□□□□ -0.37
CLK3-227ENST00000570296 TAS2R43P59537 309 aa12.77□□□□□ -0.37
CLK3-227ENST00000570296 RPL30P62888 115 aaKnown RBP12.77□□□□□ -0.37
CLK3-227ENST00000570296 TMEM88Q6PEY1 159 aa12.77□□□□□ -0.37
CLK3-227ENST00000570296 UBAC2Q8NBM4 344 aa12.77□□□□□ -0.37
CLK3-227ENST00000570296 SCARB1Q8WTV0 552 aa12.77□□□□□ -0.37
CLK3-227ENST00000570296 BET1LQ9NYM9 111 aa12.77□□□□□ -0.37
CLK3-227ENST00000570296 EIF4EP06730 217 aaKnown RBP12.76□□□□□ -0.37
CLK3-227ENST00000570296 MRPS15P82914 257 aaKnown RBP12.76□□□□□ -0.37
CLK3-227ENST00000570296 Q56UQ5 140 aa12.76□□□□□ -0.37
CLK3-227ENST00000570296 SERTAD4-AS1Q5TG53 156 aa12.76□□□□□ -0.37
CLK3-227ENST00000570296 UBE2UQ5VVX9 321 aa12.76□□□□□ -0.37
CLK3-227ENST00000570296 NRG4Q8WWG1 115 aa12.76□□□□□ -0.37
CLK3-227ENST00000570296 GRAMD2BQ96HH9 432 aa12.76□□□□□ -0.37
CLK3-227ENST00000570296 C1QTNF4Q9BXJ3 329 aa12.76□□□□□ -0.37
CLK3-227ENST00000570296 VSIRQ9H7M9 311 aa12.76□□□□□ -0.37
CLK3-227ENST00000570296 RBMX2Q9Y388 322 aaKnown RBP12.76□□□□□ -0.37
CLK3-227ENST00000570296 ST8SIA3O43173 380 aa12.75□□□□□ -0.37
CLK3-227ENST00000570296 FCGR3AP08637 254 aa12.75□□□□□ -0.37
CLK3-227ENST00000570296 MYL12AP19105 171 aa12.75□□□□□ -0.37
CLK3-227ENST00000570296 HSPA13P48723 471 aa12.75□□□□□ -0.37
CLK3-227ENST00000570296 OXA1LQ15070 435 aa12.75□□□□□ -0.37
CLK3-227ENST00000570296 THOC7Q6I9Y2 204 aaKnown RBP12.75□□□□□ -0.37
CLK3-227ENST00000570296 SLC25A24Q6NUK1 477 aa12.75□□□□□ -0.37
CLK3-227ENST00000570296 NEU1Q99519 415 aa12.75□□□□□ -0.37
CLK3-227ENST00000570296 HSD17B10Q99714 261 aaKnown RBP12.75□□□□□ -0.37
CLK3-227ENST00000570296 NIPSNAP3BQ9BS92 247 aa12.75□□□□□ -0.37
CLK3-227ENST00000570296 CENPOQ9BU64 300 aa12.75□□□□□ -0.37
CLK3-227ENST00000570296 IGHV3-21A0A0B4J1V1 117 aa12.74□□□□□ -0.37
CLK3-227ENST00000570296 KNCNA6PVL3 124 aa12.74□□□□□ -0.37
CLK3-227ENST00000570296 SLC22A5O76082 557 aa12.74□□□□□ -0.37
CLK3-227ENST00000570296 HTN3P15516 51 aa12.74□□□□□ -0.37
CLK3-227ENST00000570296 RPL11P62913 178 aaKnown RBP12.74□□□□□ -0.37
CLK3-227ENST00000570296 TIMM50Q3ZCQ8 353 aa12.74□□□□□ -0.37
CLK3-227ENST00000570296 PLAC9Q5JTB6 97 aa12.74□□□□□ -0.37
CLK3-227ENST00000570296 LRRTM1Q86UE6 522 aa12.74□□□□□ -0.37
CLK3-227ENST00000570296 TCTEX1D2Q8WW35 142 aa12.74□□□□□ -0.37
CLK3-227ENST00000570296 ST8SIA2Q92186 375 aa12.74□□□□□ -0.37
CLK3-227ENST00000570296 AIFM2Q9BRQ8 373 aa12.74□□□□□ -0.37
CLK3-227ENST00000570296 QTRT1Q9BXR0 403 aaKnown RBP12.74□□□□□ -0.37
CLK3-227ENST00000570296 COMMD5Q9GZQ3 224 aa12.74□□□□□ -0.37
CLK3-227ENST00000570296 PTTG2Q9NZH5 202 aa12.74□□□□□ -0.37
CLK3-227ENST00000570296 DKK2Q9UBU2 259 aa12.74□□□□□ -0.37
CLK3-227ENST00000570296 RABAC1Q9UI14 185 aa12.74□□□□□ -0.37
CLK3-227ENST00000570296 CD1AP06126 327 aa12.73□□□□□ -0.37
CLK3-227ENST00000570296 SERPINE2P07093 398 aa12.73□□□□□ -0.37
CLK3-227ENST00000570296 EMP1P54849 157 aa12.73□□□□□ -0.37
CLK3-227ENST00000570296 AQP4P55087 323 aa12.73□□□□□ -0.37
CLK3-227ENST00000570296 BRWD1-AS2P59051 145 aa12.73□□□□□ -0.37
CLK3-227ENST00000570296 ACTL10Q5JWF8 245 aa12.73□□□□□ -0.37
CLK3-227ENST00000570296 IZUMO2Q6UXV1 221 aa12.73□□□□□ -0.37
CLK3-227ENST00000570296 HSD17B13Q7Z5P4 300 aaPredicted RBP12.73□□□□□ -0.37
CLK3-227ENST00000570296 C8orf59Q8N0T1 100 aaPredicted RBP12.73□□□□□ -0.37
CLK3-227ENST00000570296 SYT8Q8NBV8 401 aa12.73□□□□□ -0.37
CLK3-227ENST00000570296 ZNF485Q8NCK3 441 aa12.73□□□□□ -0.37
CLK3-227ENST00000570296 PHYHIPQ92561 330 aa12.73□□□□□ -0.37
CLK3-227ENST00000570296 GINS3Q9BRX5 216 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms