RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 HRASLSQ9HDD0 168 aa11.15□□□□□ -0.62
CLN3-236ENST00000568558 TRAV3A0A0B4J244 114 aa11.14□□□□□ -0.63
CLN3-236ENST00000568558 SULT1C2O00338 296 aa11.14□□□□□ -0.63
CLN3-236ENST00000568558 ELK1P19419 428 aa11.14□□□□□ -0.63
CLN3-236ENST00000568558 GPR183P32249 361 aa11.14□□□□□ -0.63
CLN3-236ENST00000568558 ELLP55199 621 aaPredicted RBP11.14□□□□□ -0.63
CLN3-236ENST00000568558 CATR1Q13166 79 aa11.14□□□□□ -0.63
CLN3-236ENST00000568558 SRSF8Q9BRL6 282 aaKnown RBP11.14□□□□□ -0.63
CLN3-236ENST00000568558 MRPL27Q9P0M9 148 aaKnown RBP11.14□□□□□ -0.63
CLN3-236ENST00000568558 FRAS1Q86XX4 4008 aa11.13□□□□□ -0.63
CLN3-236ENST00000568558 UPK2O00526 184 aa11.13□□□□□ -0.63
CLN3-236ENST00000568558 HPRT1P00492 218 aa11.13□□□□□ -0.63
CLN3-236ENST00000568558 APOA1P02647 267 aa11.13□□□□□ -0.63
CLN3-236ENST00000568558 NQO2P16083 231 aa11.13□□□□□ -0.63
CLN3-236ENST00000568558 ZNF585BQ52M93 769 aa11.13□□□□□ -0.63
CLN3-236ENST00000568558 RBPMS2Q6ZRY4 209 aaKnown RBP11.13□□□□□ -0.63
CLN3-236ENST00000568558 OR1L6Q8NGR2 347 aa11.13□□□□□ -0.63
CLN3-236ENST00000568558 ZNF436Q9C0F3 470 aaPredicted RBP11.13□□□□□ -0.63
CLN3-236ENST00000568558 COMMD5Q9GZQ3 224 aa11.13□□□□□ -0.63
CLN3-236ENST00000568558 SLC5A7Q9GZV3 580 aa11.13□□□□□ -0.63
CLN3-236ENST00000568558 THYN1Q9P016 225 aa11.13□□□□□ -0.63
CLN3-236ENST00000568558 UFC1Q9Y3C8 167 aa11.13□□□□□ -0.63
CLN3-236ENST00000568558 IGHV3-35A0A0C4DH35 117 aa11.12□□□□□ -0.63
CLN3-236ENST00000568558 FGF2P09038 288 aa11.12□□□□□ -0.63
CLN3-236ENST00000568558 ZNF182P17025 639 aaPredicted RBP11.12□□□□□ -0.63
CLN3-236ENST00000568558 PTBP1P26599 531 aaKnown RBP eCLIP11.12□□□□□ -0.63
CLN3-236ENST00000568558 RPL5P46777 297 aaKnown RBP11.12□□□□□ -0.63
CLN3-236ENST00000568558 FXYD4P59646 89 aa11.12□□□□□ -0.63
CLN3-236ENST00000568558 PLET1Q6UQ28 207 aa11.12□□□□□ -0.63
CLN3-236ENST00000568558 ZNF818PQ6ZRF7 136 aa11.12□□□□□ -0.63
CLN3-236ENST00000568558 OR10W1Q8NGF6 305 aa11.12□□□□□ -0.63
CLN3-236ENST00000568558 TMEM190Q8WZ59 177 aa11.12□□□□□ -0.63
CLN3-236ENST00000568558 LINC00476Q8WZB0 136 aa11.12□□□□□ -0.63
CLN3-236ENST00000568558 QTRT1Q9BXR0 403 aaKnown RBP11.12□□□□□ -0.63
CLN3-236ENST00000568558 TMEM140Q9NV12 185 aa11.12□□□□□ -0.63
CLN3-236ENST00000568558 ANAPC10Q9UM13 185 aa11.12□□□□□ -0.63
CLN3-236ENST00000568558 KMT2AQ03164 3969 aa11.11□□□□□ -0.63
CLN3-236ENST00000568558 TGOLN2O43493 480 aa11.11□□□□□ -0.63
CLN3-236ENST00000568558 S1PR2O95136 353 aa11.11□□□□□ -0.63
CLN3-236ENST00000568558 CBX5P45973 191 aa11.11□□□□□ -0.63
CLN3-236ENST00000568558 THOC7Q6I9Y2 204 aaKnown RBP11.11□□□□□ -0.63
CLN3-236ENST00000568558 SNX29P2Q8IUI4 249 aa11.11□□□□□ -0.63
CLN3-236ENST00000568558 OR2C3Q8N628 320 aa11.11□□□□□ -0.63
CLN3-236ENST00000568558 GDPD1Q8N9F7 314 aa11.11□□□□□ -0.63
CLN3-236ENST00000568558 DMBX1Q8NFW5 382 aa11.11□□□□□ -0.63
CLN3-236ENST00000568558 OR51H1Q8NH63 302 aa11.11□□□□□ -0.63
CLN3-236ENST00000568558 VN1R17PQ8TDU5 208 aa11.11□□□□□ -0.63
CLN3-236ENST00000568558 RAB2BQ8WUD1 216 aa11.11□□□□□ -0.63
CLN3-236ENST00000568558 GIMAP1Q8WWP7 306 aa11.11□□□□□ -0.63
CLN3-236ENST00000568558 CMTM3Q96MX0 182 aa11.11□□□□□ -0.63
CLN3-236ENST00000568558 SPAG8Q99932 426 aaPredicted RBP11.11□□□□□ -0.63
CLN3-236ENST00000568558 MIXL1Q9H2W2 232 aa11.11□□□□□ -0.63
CLN3-236ENST00000568558 C5orf66Q9H5L9 145 aa11.11□□□□□ -0.63
CLN3-236ENST00000568558 PLEKHA2Q9HB19 425 aa11.11□□□□□ -0.63
CLN3-236ENST00000568558 IFT46Q9NQC8 304 aa11.11□□□□□ -0.63
CLN3-236ENST00000568558 COMMD9Q9P000 198 aa11.11□□□□□ -0.63
CLN3-236ENST00000568558 DNAH10Q8IVF4 4471 aa11.1□□□□□ -0.63
CLN3-236ENST00000568558 TMBIM6P55061 237 aa11.1□□□□□ -0.63
CLN3-236ENST00000568558 TMEM17Q86X19 198 aa11.1□□□□□ -0.63
CLN3-236ENST00000568558 WFDC3Q8IUB2 231 aa11.1□□□□□ -0.63
CLN3-236ENST00000568558 OR5AP2Q8NGF4 316 aa11.1□□□□□ -0.63
CLN3-236ENST00000568558 CD300LFQ8TDQ1 290 aa11.1□□□□□ -0.63
CLN3-236ENST00000568558 GPX8Q8TED1 209 aa11.1□□□□□ -0.63
CLN3-236ENST00000568558 TP53TG1Q9Y2A0 90 aa11.1□□□□□ -0.63
CLN3-236ENST00000568558 A0A0J9YWU9 116 aa11.09□□□□□ -0.63
CLN3-236ENST00000568558 FAM25AB3EWG3 89 aa11.09□□□□□ -0.63
CLN3-236ENST00000568558 FAM25CB3EWG5 89 aa11.09□□□□□ -0.63
CLN3-236ENST00000568558 FAM25GB3EWG6 89 aa11.09□□□□□ -0.63
CLN3-236ENST00000568558 H3BMQ9 156 aa11.09□□□□□ -0.63
CLN3-236ENST00000568558 TSPAN4O14817 238 aa11.09□□□□□ -0.63
CLN3-236ENST00000568558 CYB5BO43169 146 aa11.09□□□□□ -0.63
CLN3-236ENST00000568558 SERPINE2P07093 398 aa11.09□□□□□ -0.63
CLN3-236ENST00000568558 TRAPPC2P0DI81 140 aa11.09□□□□□ -0.63
CLN3-236ENST00000568558 TRAPPC2BP0DI82 140 aa11.09□□□□□ -0.63
CLN3-236ENST00000568558 RPA2P15927 270 aa11.09□□□□□ -0.63
CLN3-236ENST00000568558 NAT1P18440 290 aa11.09□□□□□ -0.63
CLN3-236ENST00000568558 PRSS3P35030 304 aa11.09□□□□□ -0.63
CLN3-236ENST00000568558 RFX2P48378 723 aa11.09□□□□□ -0.63
CLN3-236ENST00000568558 APOC4P55056 127 aa11.09□□□□□ -0.63
CLN3-236ENST00000568558 EWSR1Q01844 656 aaKnown RBP eCLIP11.09□□□□□ -0.63
CLN3-236ENST00000568558 WT1-ASQ06250 92 aa11.09□□□□□ -0.63
CLN3-236ENST00000568558 PMS2P11Q13670 270 aa11.09□□□□□ -0.63
CLN3-236ENST00000568558 AADACL3Q5VUY0 350 aa11.09□□□□□ -0.63
CLN3-236ENST00000568558 MZT2AQ6P582 158 aa11.09□□□□□ -0.63
CLN3-236ENST00000568558 Q6ZWC4 215 aa11.09□□□□□ -0.63
CLN3-236ENST00000568558 HSD17B13Q7Z5P4 300 aaPredicted RBP11.09□□□□□ -0.63
CLN3-236ENST00000568558 SLC38A6Q8IZM9 456 aa11.09□□□□□ -0.63
CLN3-236ENST00000568558 DYNC2LI1Q8TCX1 351 aa11.09□□□□□ -0.63
CLN3-236ENST00000568558 AP3S1Q92572 193 aa11.09□□□□□ -0.63
CLN3-236ENST00000568558 DAZ1Q9NQZ3 744 aaKnown RBP11.09□□□□□ -0.63
CLN3-236ENST00000568558 UBQLN2Q9UHD9 624 aa11.09□□□□□ -0.63
CLN3-236ENST00000568558 TEX50A0A1B0GTY4 177 aa11.08□□□□□ -0.64
CLN3-236ENST00000568558 SMIM31A0A1B0GVY4 71 aa11.08□□□□□ -0.64
CLN3-236ENST00000568558 CXorf65A6NEN9 183 aa11.08□□□□□ -0.64
CLN3-236ENST00000568558 OR2T8A6NH00 312 aa11.08□□□□□ -0.64
CLN3-236ENST00000568558 CTDSP2O14595 271 aa11.08□□□□□ -0.64
CLN3-236ENST00000568558 SPRY2O43597 315 aa11.08□□□□□ -0.64
CLN3-236ENST00000568558 PMP2P02689 132 aa11.08□□□□□ -0.64
CLN3-236ENST00000568558 OR13C7P0DN81 318 aa11.08□□□□□ -0.64
CLN3-236ENST00000568558 GNRHRP30968 328 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms