RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, human

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-231	ENST00000568422	ERVK-16	P61578	105 aa		12.59	□□□□□ -0.39
CLN3-231	ENST00000568422	AADACL3	Q5VUY0	350 aa		12.59	□□□□□ -0.39
CLN3-231	ENST00000568422	CROCCP3	Q8IVE0	287 aa		12.59	□□□□□ -0.39
CLN3-231	ENST00000568422	CADM3	Q8N126	398 aa		12.59	□□□□□ -0.39
CLN3-231	ENST00000568422	OR2C3	Q8N628	320 aa		12.59	□□□□□ -0.39
CLN3-231	ENST00000568422	GDPD1	Q8N9F7	314 aa		12.59	□□□□□ -0.39
CLN3-231	ENST00000568422	SPAG8	Q99932	426 aa	Predicted RBP	12.59	□□□□□ -0.39
CLN3-231	ENST00000568422	OVOL2	Q9BRP0	275 aa		12.59	□□□□□ -0.39
CLN3-231	ENST00000568422	SELENOK	Q9Y6D0	94 aa		12.59	□□□□□ -0.39
CLN3-231	ENST00000568422	BIRC6	Q9NR09	4857 aa		12.59	□□□□□ -0.39
CLN3-231	ENST00000568422	TRAV3	A0A0B4J244	114 aa		12.58	□□□□□ -0.4
CLN3-231	ENST00000568422	TGOLN2	O43493	480 aa		12.58	□□□□□ -0.4
CLN3-231	ENST00000568422	XRCC3	O43542	346 aa		12.58	□□□□□ -0.4
CLN3-231	ENST00000568422	S1PR2	O95136	353 aa		12.58	□□□□□ -0.4
CLN3-231	ENST00000568422	TRAPPC2	P0DI81	140 aa		12.58	□□□□□ -0.4
CLN3-231	ENST00000568422	TRAPPC2B	P0DI82	140 aa		12.58	□□□□□ -0.4
CLN3-231	ENST00000568422	SPSB3	Q6PJ21	355 aa		12.58	□□□□□ -0.4
CLN3-231	ENST00000568422	DHRS11	Q6UWP2	260 aa		12.58	□□□□□ -0.4
CLN3-231	ENST00000568422	TMEM17	Q86X19	198 aa		12.58	□□□□□ -0.4
CLN3-231	ENST00000568422	OR1L8	Q8NGR8	309 aa		12.58	□□□□□ -0.4
CLN3-231	ENST00000568422	S100A16	Q96FQ6	103 aa	Known RBP	12.58	□□□□□ -0.4
CLN3-231	ENST00000568422	BSCL2	Q96G97	398 aa	Predicted RBP	12.58	□□□□□ -0.4
CLN3-231	ENST00000568422	RNF167	Q9H6Y7	350 aa		12.58	□□□□□ -0.4
CLN3-231	ENST00000568422	IFT46	Q9NQC8	304 aa		12.58	□□□□□ -0.4
CLN3-231	ENST00000568422	TP53TG1	Q9Y2A0	90 aa		12.58	□□□□□ -0.4
CLN3-231	ENST00000568422	OR13C7	P0DN81	318 aa		12.57	□□□□□ -0.4
CLN3-231	ENST00000568422	F2R	P25116	425 aa		12.57	□□□□□ -0.4
CLN3-231	ENST00000568422	GNRHR	P30968	328 aa		12.57	□□□□□ -0.4
CLN3-231	ENST00000568422	APOC4	P55056	127 aa		12.57	□□□□□ -0.4
CLN3-231	ENST00000568422		Q6ZWC4	215 aa		12.57	□□□□□ -0.4
CLN3-231	ENST00000568422	WFDC3	Q8IUB2	231 aa		12.57	□□□□□ -0.4
CLN3-231	ENST00000568422	OR10W1	Q8NGF6	305 aa		12.57	□□□□□ -0.4
CLN3-231	ENST00000568422	TMEM190	Q8WZ59	177 aa		12.57	□□□□□ -0.4
CLN3-231	ENST00000568422	DAZ1	Q9NQZ3	744 aa	Known RBP	12.57	□□□□□ -0.4
CLN3-231	ENST00000568422	EHF	Q9NZC4	300 aa		12.57	□□□□□ -0.4
CLN3-231	ENST00000568422	TEX50	A0A1B0GTY4	177 aa		12.56	□□□□□ -0.4
CLN3-231	ENST00000568422	MARCH11	A6NNE9	402 aa		12.56	□□□□□ -0.4
CLN3-231	ENST00000568422	UBE2C	O00762	179 aa		12.56	□□□□□ -0.4
CLN3-231	ENST00000568422	TSPAN4	O14817	238 aa		12.56	□□□□□ -0.4
CLN3-231	ENST00000568422	FCER2	P06734	321 aa		12.56	□□□□□ -0.4
CLN3-231	ENST00000568422	WT1-AS	Q06250	92 aa		12.56	□□□□□ -0.4
CLN3-231	ENST00000568422	LAMTOR1	Q6IAA8	161 aa		12.56	□□□□□ -0.4
CLN3-231	ENST00000568422	SLC25A24	Q6NUK1	477 aa		12.56	□□□□□ -0.4
CLN3-231	ENST00000568422	CMTM1	Q8IZ96	169 aa		12.56	□□□□□ -0.4
CLN3-231	ENST00000568422	LSM10	Q969L4	123 aa	Known RBP	12.56	□□□□□ -0.4
CLN3-231	ENST00000568422	MOB3A	Q96BX8	217 aa		12.56	□□□□□ -0.4
CLN3-231	ENST00000568422	NDUFA4L2	Q9NRX3	87 aa		12.56	□□□□□ -0.4
CLN3-231	ENST00000568422	IGHV3-35	A0A0C4DH35	117 aa		12.55	□□□□□ -0.4
CLN3-231	ENST00000568422	OR2T8	A6NH00	312 aa		12.55	□□□□□ -0.4
CLN3-231	ENST00000568422	NDUFA4	O00483	81 aa		12.55	□□□□□ -0.4
CLN3-231	ENST00000568422	PGLYRP1	O75594	196 aa	Predicted RBP	12.55	□□□□□ -0.4
CLN3-231	ENST00000568422	SNAPC5	O75971	98 aa		12.55	□□□□□ -0.4
CLN3-231	ENST00000568422	TAS2R46	P59540	309 aa		12.55	□□□□□ -0.4
CLN3-231	ENST00000568422	DGCR14	Q96DF8	476 aa	Known RBP	12.55	□□□□□ -0.4
CLN3-231	ENST00000568422	FKBP11	Q9NYL4	201 aa		12.55	□□□□□ -0.4
CLN3-231	ENST00000568422	F11R	Q9Y624	299 aa	Known RBP	12.55	□□□□□ -0.4
CLN3-231	ENST00000568422	MEIS3P1	A6NDR6	274 aa		12.54	□□□□□ -0.4
CLN3-231	ENST00000568422		K7EMT4	169 aa		12.54	□□□□□ -0.4
CLN3-231	ENST00000568422	RLN1	P04808	185 aa		12.54	□□□□□ -0.4
CLN3-231	ENST00000568422	BMI1	P35226	326 aa		12.54	□□□□□ -0.4
CLN3-231	ENST00000568422	RFX2	P48378	723 aa		12.54	□□□□□ -0.4
CLN3-231	ENST00000568422	PLEC	Q15149	4684 aa	Known RBP	12.54	□□□□□ -0.4
CLN3-231	ENST00000568422	UBE2NL	Q5JXB2	153 aa		12.54	□□□□□ -0.4
CLN3-231	ENST00000568422	TSPAN14	Q8NG11	270 aa		12.54	□□□□□ -0.4
CLN3-231	ENST00000568422	TMEM56	Q96MV1	263 aa		12.54	□□□□□ -0.4
CLN3-231	ENST00000568422	ZNF2	Q9BSG1	426 aa	Predicted RBP	12.54	□□□□□ -0.4
CLN3-231	ENST00000568422	C21orf62	Q9NYP8	219 aa		12.54	□□□□□ -0.4
CLN3-231	ENST00000568422	PRND	Q9UKY0	176 aa		12.54	□□□□□ -0.4
CLN3-231	ENST00000568422	ANAPC10	Q9UM13	185 aa		12.54	□□□□□ -0.4
CLN3-231	ENST00000568422	OR51B2	Q9Y5P1	312 aa		12.54	□□□□□ -0.4
CLN3-231	ENST00000568422	KIR2DL5B	A0A0G2JN68	375 aa		12.53	□□□□□ -0.4
CLN3-231	ENST00000568422	KIR2DL5B	A0A0G2JPC4	375 aa		12.53	□□□□□ -0.4
CLN3-231	ENST00000568422	NUPR2	A6NF83	97 aa		12.53	□□□□□ -0.4
CLN3-231	ENST00000568422	SPRY2	O43597	315 aa		12.53	□□□□□ -0.4
CLN3-231	ENST00000568422	KRAS	P01116	189 aa		12.53	□□□□□ -0.4
CLN3-231	ENST00000568422	RPA2	P15927	270 aa		12.53	□□□□□ -0.4
CLN3-231	ENST00000568422	NAT1	P18440	290 aa		12.53	□□□□□ -0.4
CLN3-231	ENST00000568422	ATF4	P18848	351 aa	Predicted RBP	12.53	□□□□□ -0.4
CLN3-231	ENST00000568422	LPAR6	P43657	344 aa		12.53	□□□□□ -0.4
CLN3-231	ENST00000568422	TNFRSF9	Q07011	255 aa		12.53	□□□□□ -0.4
CLN3-231	ENST00000568422	NEDD8	Q15843	81 aa		12.53	□□□□□ -0.4
CLN3-231	ENST00000568422	KCTD21	Q4G0X4	260 aa		12.53	□□□□□ -0.4
CLN3-231	ENST00000568422	TMEM69	Q5SWH9	247 aa		12.53	□□□□□ -0.4
CLN3-231	ENST00000568422	KIR2DL5A	Q8N109	375 aa		12.53	□□□□□ -0.4
CLN3-231	ENST00000568422	OR5H2	Q8NGV7	314 aa		12.53	□□□□□ -0.4
CLN3-231	ENST00000568422	OR6F1	Q8NGZ6	308 aa		12.53	□□□□□ -0.4
CLN3-231	ENST00000568422	OR5B3	Q8NH48	314 aa		12.53	□□□□□ -0.4
CLN3-231	ENST00000568422	KIR2DL5B	Q8NHK3	375 aa		12.53	□□□□□ -0.4
CLN3-231	ENST00000568422	SCARB1	Q8WTV0	552 aa		12.53	□□□□□ -0.4
CLN3-231	ENST00000568422	FCAMR	Q8WWV6	532 aa		12.53	□□□□□ -0.4
CLN3-231	ENST00000568422	TSC22D3	Q99576	134 aa		12.53	□□□□□ -0.4
CLN3-231	ENST00000568422	OR4C46	A6NHA9	309 aa		12.52	□□□□□ -0.41
CLN3-231	ENST00000568422	C15orf62	A8K5M9	175 aa		12.52	□□□□□ -0.41
CLN3-231	ENST00000568422	GPR31	O00270	319 aa		12.52	□□□□□ -0.41
CLN3-231	ENST00000568422	MFAP2	P55001	183 aa		12.52	□□□□□ -0.41
CLN3-231	ENST00000568422	HINT2	Q9BX68	163 aa		12.52	□□□□□ -0.41
CLN3-231	ENST00000568422	FAM212B	Q9NTI7	297 aa	Predicted RBP	12.52	□□□□□ -0.41
CLN3-231	ENST00000568422	CXorf65	A6NEN9	183 aa		12.51	□□□□□ -0.41
CLN3-231	ENST00000568422	PMP2	P02689	132 aa		12.51	□□□□□ -0.41
CLN3-231	ENST00000568422	S100G	P29377	79 aa		12.51	□□□□□ -0.41

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