RNA–Protein interactions for RNA: ENST00000568139.5

CLK3-221, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 918 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-221ENST00000568139 QTRT1Q9BXR0 403 aaKnown RBP12.95□□□□□ -0.34
CLK3-221ENST00000568139 SMIM30A4D0T7 59 aa12.94□□□□□ -0.34
CLK3-221ENST00000568139 NOTOA8MTQ0 251 aa12.94□□□□□ -0.34
CLK3-221ENST00000568139 SULT1C2O00338 296 aa12.94□□□□□ -0.34
CLK3-221ENST00000568139 SERPINE2P07093 398 aa12.94□□□□□ -0.34
CLK3-221ENST00000568139 FCGR2CP31995 323 aa12.94□□□□□ -0.34
CLK3-221ENST00000568139 SLC25A24Q6NUK1 477 aa12.94□□□□□ -0.34
CLK3-221ENST00000568139 HSD17B13Q7Z5P4 300 aaPredicted RBP12.94□□□□□ -0.34
CLK3-221ENST00000568139 APRG1Q8IVJ8 170 aa12.94□□□□□ -0.34
CLK3-221ENST00000568139 CHRDL1Q9BU40 450 aa12.94□□□□□ -0.34
CLK3-221ENST00000568139 C6orf62Q9GZU0 229 aaPredicted RBP12.94□□□□□ -0.34
CLK3-221ENST00000568139 CSTL1Q9H114 145 aa12.94□□□□□ -0.34
CLK3-221ENST00000568139 TMEM140Q9NV12 185 aa12.94□□□□□ -0.34
CLK3-221ENST00000568139 F8W735 103 aaPredicted RBP12.93□□□□□ -0.34
CLK3-221ENST00000568139 PPYP01298 95 aa12.93□□□□□ -0.34
CLK3-221ENST00000568139 TRAPPC2P0DI81 140 aa12.93□□□□□ -0.34
CLK3-221ENST00000568139 TRAPPC2BP0DI82 140 aa12.93□□□□□ -0.34
CLK3-221ENST00000568139 OR13C7P0DN81 318 aa12.93□□□□□ -0.34
CLK3-221ENST00000568139 PTHLHP12272 177 aa12.93□□□□□ -0.34
CLK3-221ENST00000568139 ADMP35318 185 aa12.93□□□□□ -0.34
CLK3-221ENST00000568139 NANOS2P60321 138 aaKnown RBP12.93□□□□□ -0.34
CLK3-221ENST00000568139 PRR20EP86478 221 aa12.93□□□□□ -0.34
CLK3-221ENST00000568139 PRR20CP86479 221 aa12.93□□□□□ -0.34
CLK3-221ENST00000568139 PRR20DP86480 221 aa12.93□□□□□ -0.34
CLK3-221ENST00000568139 PRR20BP86481 221 aa12.93□□□□□ -0.34
CLK3-221ENST00000568139 PRR20AP86496 221 aa12.93□□□□□ -0.34
CLK3-221ENST00000568139 WT1-ASQ06250 92 aa12.93□□□□□ -0.34
CLK3-221ENST00000568139 CATR1Q13166 79 aa12.93□□□□□ -0.34
CLK3-221ENST00000568139 BEST4Q8NFU0 473 aa12.93□□□□□ -0.34
CLK3-221ENST00000568139 CD300LFQ8TDQ1 290 aa12.93□□□□□ -0.34
CLK3-221ENST00000568139 RARRES2Q99969 163 aa12.93□□□□□ -0.34
CLK3-221ENST00000568139 C20orf24Q9BUV8 137 aa12.93□□□□□ -0.34
CLK3-221ENST00000568139 MFFQ9GZY8 342 aa12.93□□□□□ -0.34
CLK3-221ENST00000568139 C11orf68Q9H3H3 251 aaKnown RBP12.93□□□□□ -0.34
CLK3-221ENST00000568139 PLEKHA2Q9HB19 425 aa12.93□□□□□ -0.34
CLK3-221ENST00000568139 C21orf62Q9NYP8 219 aa12.93□□□□□ -0.34
CLK3-221ENST00000568139 TEX50A0A1B0GTY4 177 aa12.92□□□□□ -0.34
CLK3-221ENST00000568139 C15orf62A8K5M9 175 aa12.92□□□□□ -0.34
CLK3-221ENST00000568139 MPTX1A8MV57 137 aa12.92□□□□□ -0.34
CLK3-221ENST00000568139 ZNF207O43670 478 aaKnown RBP12.92□□□□□ -0.34
CLK3-221ENST00000568139 MFAP2P55001 183 aa12.92□□□□□ -0.34
CLK3-221ENST00000568139 CMC4P56277 68 aaPredicted RBP12.92□□□□□ -0.34
CLK3-221ENST00000568139 ARPC4P59998 168 aa12.92□□□□□ -0.34
CLK3-221ENST00000568139 DMBX1Q8NFW5 382 aa12.92□□□□□ -0.34
CLK3-221ENST00000568139 C11orf45Q8TAV5 145 aa12.92□□□□□ -0.34
CLK3-221ENST00000568139 SCARB1Q8WTV0 552 aa12.92□□□□□ -0.34
CLK3-221ENST00000568139 NRG4Q8WWG1 115 aa12.92□□□□□ -0.34
CLK3-221ENST00000568139 ZNF414Q96IQ9 312 aa12.92□□□□□ -0.34
CLK3-221ENST00000568139 SLC5A7Q9GZV3 580 aa12.92□□□□□ -0.34
CLK3-221ENST00000568139 SMPXQ9UHP9 88 aa12.92□□□□□ -0.34
CLK3-221ENST00000568139 ETV7Q9Y603 341 aa12.92□□□□□ -0.34
CLK3-221ENST00000568139 F11RQ9Y624 299 aaKnown RBP12.92□□□□□ -0.34
CLK3-221ENST00000568139 IGHV3OR16-8A0A075B7F1 116 aa12.91□□□□□ -0.34
CLK3-221ENST00000568139 IFNA4P05014 189 aa12.91□□□□□ -0.34
CLK3-221ENST00000568139 RBMS2Q15434 407 aaKnown RBP12.91□□□□□ -0.34
CLK3-221ENST00000568139 ZNF124Q15973 351 aa12.91□□□□□ -0.34
CLK3-221ENST00000568139 ZNF818PQ6ZRF7 136 aa12.91□□□□□ -0.34
CLK3-221ENST00000568139 HOGA1Q86XE5 327 aa12.91□□□□□ -0.34
CLK3-221ENST00000568139 GVQW1Q8N7I0 195 aa12.91□□□□□ -0.34
CLK3-221ENST00000568139 OR1L8Q8NGR8 309 aa12.91□□□□□ -0.34
CLK3-221ENST00000568139 RNF2Q99496 336 aa12.91□□□□□ -0.34
CLK3-221ENST00000568139 NDUFA4L2Q9NRX3 87 aa12.91□□□□□ -0.34
CLK3-221ENST00000568139 COMMD9Q9P000 198 aa12.91□□□□□ -0.34
CLK3-221ENST00000568139 IGHV3-21A0A0B4J1V1 117 aa12.9□□□□□ -0.34
CLK3-221ENST00000568139 K7EIM0 57 aa12.9□□□□□ -0.34
CLK3-221ENST00000568139 CHEK1O14757 476 aa12.9□□□□□ -0.34
CLK3-221ENST00000568139 FGF9P31371 208 aaPredicted RBP12.9□□□□□ -0.34
CLK3-221ENST00000568139 TCTAP57738 103 aa12.9□□□□□ -0.34
CLK3-221ENST00000568139 TPRA1Q86W33 373 aa12.9□□□□□ -0.34
CLK3-221ENST00000568139 OR11H2Q8NH07 326 aa12.9□□□□□ -0.34
CLK3-221ENST00000568139 OR51H1Q8NH63 302 aa12.9□□□□□ -0.34
CLK3-221ENST00000568139 FBXL17Q9UF56 701 aa12.9□□□□□ -0.34
CLK3-221ENST00000568139 DAPK2Q9UIK4 370 aa12.9□□□□□ -0.34
CLK3-221ENST00000568139 HECTD4Q9Y4D8 3996 aa12.9□□□□□ -0.34
CLK3-221ENST00000568139 PCLOQ9Y6V0 5065 aa12.89□□□□□ -0.35
CLK3-221ENST00000568139 IGHV7-4-1A0A0J9YVY3 117 aa12.89□□□□□ -0.35
CLK3-221ENST00000568139 CTSGP08311 255 aa12.89□□□□□ -0.35
CLK3-221ENST00000568139 FXYD4P59646 89 aa12.89□□□□□ -0.35
CLK3-221ENST00000568139 LGALS14Q8TCE9 139 aa12.89□□□□□ -0.35
CLK3-221ENST00000568139 C2CD4CQ8TF44 421 aa12.89□□□□□ -0.35
CLK3-221ENST00000568139 GIMAP1Q8WWP7 306 aa12.89□□□□□ -0.35
CLK3-221ENST00000568139 LSM10Q969L4 123 aaKnown RBP12.89□□□□□ -0.35
CLK3-221ENST00000568139 RHPN1-AS1Q9BWJ2 59 aa12.89□□□□□ -0.35
CLK3-221ENST00000568139 TXNL4BQ9NX01 149 aaKnown RBP12.89□□□□□ -0.35
CLK3-221ENST00000568139 RHBDL2Q9NX52 303 aa12.89□□□□□ -0.35
CLK3-221ENST00000568139 Q56UQ5 140 aa12.88□□□□□ -0.35
CLK3-221ENST00000568139 AADACL3Q5VUY0 350 aa12.88□□□□□ -0.35
CLK3-221ENST00000568139 FAM90A2PQ658T7 463 aa12.88□□□□□ -0.35
CLK3-221ENST00000568139 SFXN4Q6P4A7 337 aa12.88□□□□□ -0.35
CLK3-221ENST00000568139 CADM3Q8N126 398 aa12.88□□□□□ -0.35
CLK3-221ENST00000568139 UBAC2Q8NBM4 344 aa12.88□□□□□ -0.35
CLK3-221ENST00000568139 TMEM116Q8NCL8 245 aa12.88□□□□□ -0.35
CLK3-221ENST00000568139 OR10C1Q96KK4 312 aa12.88□□□□□ -0.35
CLK3-221ENST00000568139 RRP15Q9Y3B9 282 aaKnown RBP12.88□□□□□ -0.35
CLK3-221ENST00000568139 VPS13DQ5THJ4 4388 aa12.87□□□□□ -0.35
CLK3-221ENST00000568139 TRAV18A0A075B6X5 111 aa12.87□□□□□ -0.35
CLK3-221ENST00000568139 MARCH11A6NNE9 402 aa12.87□□□□□ -0.35
CLK3-221ENST00000568139 GNRHRP30968 328 aa12.87□□□□□ -0.35
CLK3-221ENST00000568139 ERVK-16P61578 105 aa12.87□□□□□ -0.35
CLK3-221ENST00000568139 RELQ04864 619 aaPredicted RBP12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 76.3 ms