RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 LHFPL1Q86WI0 220 aa14.27□□□□□ -0.13
CLN3-227ENST00000567495 LAX1Q8IWV1 398 aa14.27□□□□□ -0.13
CLN3-227ENST00000567495 DYNC2LI1Q8TCX1 351 aa14.27□□□□□ -0.13
CLN3-227ENST00000567495 NDUFA4L2Q9NRX3 87 aa14.27□□□□□ -0.13
CLN3-227ENST00000567495 REG1AP05451 166 aa14.26□□□□□ -0.13
CLN3-227ENST00000567495 OR13C7P0DN81 318 aa14.26□□□□□ -0.13
CLN3-227ENST00000567495 LCN12Q6JVE5 192 aa14.26□□□□□ -0.13
CLN3-227ENST00000567495 GPHB5Q86YW7 130 aa14.26□□□□□ -0.13
CLN3-227ENST00000567495 GDPD1Q8N9F7 314 aa14.26□□□□□ -0.13
CLN3-227ENST00000567495 OR2K2Q8NGT1 345 aa14.26□□□□□ -0.13
CLN3-227ENST00000567495 TERB2Q8NHR7 220 aa14.26□□□□□ -0.13
CLN3-227ENST00000567495 ZFAND1Q8TCF1 268 aa14.26□□□□□ -0.13
CLN3-227ENST00000567495 LSM10Q969L4 123 aaKnown RBP14.26□□□□□ -0.13
CLN3-227ENST00000567495 DIRAS2Q96HU8 199 aa14.26□□□□□ -0.13
CLN3-227ENST00000567495 OR51B2Q9Y5P1 312 aa14.26□□□□□ -0.13
CLN3-227ENST00000567495 LGALS9O00182 355 aa14.25□□□□□ -0.13
CLN3-227ENST00000567495 CTDSPLO15194 276 aa14.25□□□□□ -0.13
CLN3-227ENST00000567495 ATG12O94817 140 aa14.25□□□□□ -0.13
CLN3-227ENST00000567495 RAB3DO95716 219 aa14.25□□□□□ -0.13
CLN3-227ENST00000567495 MEF2DQ14814 521 aa14.25□□□□□ -0.13
CLN3-227ENST00000567495 STEAP1BQ6NZ63 245 aa14.25□□□□□ -0.13
CLN3-227ENST00000567495 CLEC19AQ6UXS0 136 aa14.25□□□□□ -0.13
CLN3-227ENST00000567495 C19orf35Q6ZS72 473 aa14.25□□□□□ -0.13
CLN3-227ENST00000567495 H2BFWTQ7Z2G1 175 aa14.25□□□□□ -0.13
CLN3-227ENST00000567495 Q8N402 240 aa14.25□□□□□ -0.13
CLN3-227ENST00000567495 OR1L6Q8NGR2 347 aa14.25□□□□□ -0.13
CLN3-227ENST00000567495 SMIM4Q8WVI0 70 aa14.25□□□□□ -0.13
CLN3-227ENST00000567495 CCDC140Q96MF4 163 aa14.25□□□□□ -0.13
CLN3-227ENST00000567495 TMEM56Q96MV1 263 aa14.25□□□□□ -0.13
CLN3-227ENST00000567495 TMEM14BQ9NUH8 114 aa14.25□□□□□ -0.13
CLN3-227ENST00000567495 DMRT1Q9Y5R6 373 aa14.25□□□□□ -0.13
CLN3-227ENST00000567495 B3GALNT1O75752 331 aa14.24□□□□□ -0.13
CLN3-227ENST00000567495 ARL3P36405 182 aa14.24□□□□□ -0.13
CLN3-227ENST00000567495 PIGPP57054 158 aa14.24□□□□□ -0.13
CLN3-227ENST00000567495 FAM106AQ4KMX7 169 aa14.24□□□□□ -0.13
CLN3-227ENST00000567495 C11orf87Q6NUJ2 197 aa14.24□□□□□ -0.13
CLN3-227ENST00000567495 CCDC71LQ8N9Z2 235 aa14.24□□□□□ -0.13
CLN3-227ENST00000567495 OR10W1Q8NGF6 305 aa14.24□□□□□ -0.13
CLN3-227ENST00000567495 VN1R17PQ8TDU5 208 aa14.24□□□□□ -0.13
CLN3-227ENST00000567495 SEC22AQ96IW7 307 aa14.24□□□□□ -0.13
CLN3-227ENST00000567495 ATP6V0BQ99437 205 aa14.24□□□□□ -0.13
CLN3-227ENST00000567495 HINT2Q9BX68 163 aa14.24□□□□□ -0.13
CLN3-227ENST00000567495 C15orf61A6NNL5 157 aa14.23□□□□□ -0.13
CLN3-227ENST00000567495 PPP5D1E7EU14 171 aa14.23□□□□□ -0.13
CLN3-227ENST00000567495 H3BMQ9 156 aa14.23□□□□□ -0.13
CLN3-227ENST00000567495 OR2C1O95371 312 aa14.23□□□□□ -0.13
CLN3-227ENST00000567495 MECP2P51608 486 aaKnown RBP14.23□□□□□ -0.13
CLN3-227ENST00000567495 WT1-ASQ06250 92 aa14.23□□□□□ -0.13
CLN3-227ENST00000567495 OR4A16Q8NH70 328 aa14.23□□□□□ -0.13
CLN3-227ENST00000567495 ISOC1Q96CN7 298 aa14.23□□□□□ -0.13
CLN3-227ENST00000567495 COPZ2Q9P299 210 aa14.23□□□□□ -0.13
CLN3-227ENST00000567495 RSL24D1Q9UHA3 163 aaKnown RBP14.23□□□□□ -0.13
CLN3-227ENST00000567495 NSG2Q9Y328 171 aa14.23□□□□□ -0.13
CLN3-227ENST00000567495 U3KQK5 164 aa14.23□□□□□ -0.13
CLN3-227ENST00000567495 CLEC3BP05452 202 aa14.22□□□□□ -0.13
CLN3-227ENST00000567495 IL18Q14116 193 aa14.22□□□□□ -0.13
CLN3-227ENST00000567495 SCGB2B2Q4G0G5 96 aa14.22□□□□□ -0.13
CLN3-227ENST00000567495 GTSCR1Q86UQ5 136 aa14.22□□□□□ -0.13
CLN3-227ENST00000567495 HAPLN4Q86UW8 402 aa14.22□□□□□ -0.13
CLN3-227ENST00000567495 ZNF502Q8TBZ5 544 aa14.22□□□□□ -0.13
CLN3-227ENST00000567495 C6orf62Q9GZU0 229 aaPredicted RBP14.22□□□□□ -0.13
CLN3-227ENST00000567495 TECRQ9NZ01 308 aaKnown RBP14.22□□□□□ -0.13
CLN3-227ENST00000567495 F11RQ9Y624 299 aaKnown RBP14.22□□□□□ -0.13
CLN3-227ENST00000567495 MFSD2BA6NFX1 497 aa14.21□□□□□ -0.13
CLN3-227ENST00000567495 A8MZ25 164 aa14.21□□□□□ -0.13
CLN3-227ENST00000567495 DISC1C4P0D8 188 aa14.21□□□□□ -0.13
CLN3-227ENST00000567495 IGHV3-23P01764 117 aa14.21□□□□□ -0.13
CLN3-227ENST00000567495 HLA-AP01891 365 aaKnown RBP14.21□□□□□ -0.13
CLN3-227ENST00000567495 PI3P19957 117 aa14.21□□□□□ -0.13
CLN3-227ENST00000567495 SURF2Q15527 256 aaPredicted RBP14.21□□□□□ -0.13
CLN3-227ENST00000567495 SLC25A24Q6NUK1 477 aa14.21□□□□□ -0.13
CLN3-227ENST00000567495 SGPP2Q8IWX5 399 aa14.21□□□□□ -0.13
CLN3-227ENST00000567495 OR4D10Q8NGI6 311 aa14.21□□□□□ -0.13
CLN3-227ENST00000567495 DYNLRB2Q8TF09 96 aa14.21□□□□□ -0.13
CLN3-227ENST00000567495 MRGPRFQ96AM1 343 aa14.21□□□□□ -0.13
CLN3-227ENST00000567495 SLIRPQ9GZT3 109 aaKnown RBP14.21□□□□□ -0.13
CLN3-227ENST00000567495 C3orf85A0A1B0GTC6 90 aa14.2□□□□□ -0.14
CLN3-227ENST00000567495 C2orf70A6NJV1 201 aa14.2□□□□□ -0.14
CLN3-227ENST00000567495 IGKV1-39P01597 117 aa14.2□□□□□ -0.14
CLN3-227ENST00000567495 IGKV1D-39P04432 117 aa14.2□□□□□ -0.14
CLN3-227ENST00000567495 CTSDP07339 412 aaPredicted RBP14.2□□□□□ -0.14
CLN3-227ENST00000567495 FOLR2P14207 255 aa14.2□□□□□ -0.14
CLN3-227ENST00000567495 PPP5CP53041 499 aa14.2□□□□□ -0.14
CLN3-227ENST00000567495 Q8N1Y9 231 aa14.2□□□□□ -0.14
CLN3-227ENST00000567495 OR13C8Q8NGS7 320 aa14.2□□□□□ -0.14
CLN3-227ENST00000567495 OR1P1Q8NH06 330 aa14.2□□□□□ -0.14
CLN3-227ENST00000567495 WWC2-AS2Q96NR7 200 aa14.2□□□□□ -0.14
CLN3-227ENST00000567495 S4R3C0 116 aa14.2□□□□□ -0.14
CLN3-227ENST00000567495 COL7A1Q02388 2944 aa14.2□□□□□ -0.14
CLN3-227ENST00000567495 ZNF320A2RRD8 509 aa14.19□□□□□ -0.14
CLN3-227ENST00000567495 A8MWP6 167 aa14.19□□□□□ -0.14
CLN3-227ENST00000567495 GSTZ1O43708 216 aaPredicted RBP14.19□□□□□ -0.14
CLN3-227ENST00000567495 FRMD6-AS1P0C7T7 363 aa14.19□□□□□ -0.14
CLN3-227ENST00000567495 AKAIN1P0CW23 69 aa14.19□□□□□ -0.14
CLN3-227ENST00000567495 HSPE1P61604 102 aaKnown RBP14.19□□□□□ -0.14
CLN3-227ENST00000567495 DEFB114Q30KQ6 69 aa14.19□□□□□ -0.14
CLN3-227ENST00000567495 SPSB3Q6PJ21 355 aa14.19□□□□□ -0.14
CLN3-227ENST00000567495 PLET1Q6UQ28 207 aa14.19□□□□□ -0.14
CLN3-227ENST00000567495 MCFD2Q8NI22 146 aa14.19□□□□□ -0.14
CLN3-227ENST00000567495 MARC2Q969Z3 335 aa14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms